Gchil6759.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6759.t1
Unique NameGchil6759.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length551
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:926042..928592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_012422-tr
PFAMsRVT_1,Retrotrans_gag,gag-asp_proteas,rve,zf-CCHC,zf-H2C2
Max annot lvl33208|Metazoa
Evalue4.74e-89
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria
DescriptionK02A2.6-like
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6759Gchil6759Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 926042..928592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6759.t1Gchil6759.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 926042..928592 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6759.t1.start1Gchil6759.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 926042..926044 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6759.t1.CDS1Gchil6759.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 926042..926245 +
Gchil6759.t1.CDS2Gchil6759.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 927036..927399 +
Gchil6759.t1.CDS3Gchil6759.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 927508..928592 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6759.t1.exon1Gchil6759.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 926042..926245 +
Gchil6759.t1.exon2Gchil6759.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 927036..927399 +
Gchil6759.t1.exon3Gchil6759.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 927508..928592 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6759.t1.intron1Gchil6759.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 926246..927035 +
Gchil6759.t1.intron2Gchil6759.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 927400..927507 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6759.t1.stop1Gchil6759.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 928590..928592 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6759.t1 ID=Gchil6759.t1|Name=Gchil6759.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=551bp
MVRLLTVLDTGAGPNFVVEEVLPPALQSRIRHDHVPEVADANNKPLDTVE
FIELVVRVGSRVVKLDFVHPYRAGPAARAEERTQEDKMIRAGVIEPAQSP
WASPVVLAPKQDGSWRFCFDYRRLNAVTVKDVYLISRMDEYIDSLGTATV
FTTLDANWGYWQVPVRKQDQDKTSFACHFGLYRFKRMPFDNLDKHLTHVR
DIMATLRDACVTLKMKNCDFFTDTVKYLGHVIRPGRVTIEETRVKSLKEA
KEPRTQTELRSFLGLANVYRRFIPHFADKAAPLNALLRKGQPPKLDPFTP
VQTESFNSLKDSVVSAPILSLPKPERPFIKDTDASDYQVGCALFQTAPNG
ERSPVGYWSRSLNVHEKNHSVSEKECLAVVWALQTFRPYLMGDHSTVFTD
HASLRWLLSILEPSGGLMRWRLRLAEFGFDVQYGKGSCNTQADALSRLVT
TGEALPVKDDEIPCYAVNGDDATIEGEERDTDSSYSGSELDDILLSEDSE
KPLPGNFVPSTPEEMTREQFADPSCAKVRAQLNGVEQRPVRGYLKMQLIE
*
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spliced messenger RNA

>Gchil6759.t1 ID=Gchil6759.t1|Name=Gchil6759.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1653bp|location=Sequence derived from alignment at tig00004416_pilon:926042..928592+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atggtgcgacttcttaccgtcttagacaccggtgccggtccgaactttgt
cgtggaggaagtgttaccgcctgctttgcagtctaggatccgccacgacc
acgtcccggaggtcgctgacgcgaacaacaaaccgttggatacggtggag
ttcatagaactggtagtccgcgttggctctcgcgtggtgaaactcgactt
cgtccacccataccgtgccggacccgccgcacgcgcggaggaaaggacac
aagaggataaaatgattcgagcaggagtcattgaaccggctcagtcgccg
tgggcttctccagtagtactggctccaaagcaggatggttcctggaggtt
ttgcttcgactaccgtcggttgaatgccgtcactgtcaaggacgtgtatc
taatctcaagaatggacgagtacattgactcgctgggcacggccaccgtc
tttacaacccttgacgccaattggggatactggcaagttccggtaaggaa
gcaagaccaggataaaacctctttcgcgtgtcactttggtctctaccgtt
tcaaacggatgccttttgacaacctggacaaacatctcactcatgtgagg
gatatcatggccacgctacgagatgcgtgtgtcactcttaagatgaagaa
ttgtgacttcttcacggacaccgtgaagtatctcggccatgttatccgtc
caggacgtgttacaatcgaggagactcgtgttaagtcactcaaagaggct
aaagaaccgcggacgcaaaccgagcttcgttcctttctgggactcgcgaa
cgtctaccgacgattcatcccgcactttgcggacaaggctgcaccgttaa
acgcgcttttgcggaaaggccaaccaccaaaactggaccccttcaccccc
gttcaaacggaatctttcaactctcttaaggattccgtcgtctccgcccc
gatcctctcgttgcccaagcctgaaaggcccttcatcaaggatacggacg
ccagcgactaccaagtaggttgtgcactgtttcaaactgcacccaatggg
gaaagaagccccgtcgggtactggtcccgatcgctcaacgtccacgagaa
gaatcactccgtctcggagaaggaatgccttgcagtagtgtgggccttac
aaacgttccgcccctacctcatgggtgatcattccaccgtttttacggac
cacgcatcacttcgatggctactctccatcttggagccttcaggcggctt
gatgcgttggcgtctccgtctagcggaatttggctttgacgtgcagtacg
gaaaaggatcgtgcaacacccaagccgatgctctctcccgcctggtcact
actggcgaagcactacccgtcaaagacgatgaaataccctgctatgcagt
gaatggcgacgacgctaccatcgagggcgaggaacgagacacggactctt
catattccggttccgaattagacgacattcttctctcggaagattccgag
aaacccttaccaggcaacttcgtgcctagtactccagaagagatgacacg
ggagcaattcgctgacccatcctgcgcgaaggtccgcgctcaactcaatg
gtgtagagcaacgcccagttaggggatacttgaagatgcaactcatagaa
tga
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protein sequence of Gchil6759.t1

>Gchil6759.t1 ID=Gchil6759.t1|Name=Gchil6759.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=551bp
MVRLLTVLDTGAGPNFVVEEVLPPALQSRIRHDHVPEVADANNKPLDTVE
FIELVVRVGSRVVKLDFVHPYRAGPAARAEERTQEDKMIRAGVIEPAQSP
WASPVVLAPKQDGSWRFCFDYRRLNAVTVKDVYLISRMDEYIDSLGTATV
FTTLDANWGYWQVPVRKQDQDKTSFACHFGLYRFKRMPFDNLDKHLTHVR
DIMATLRDACVTLKMKNCDFFTDTVKYLGHVIRPGRVTIEETRVKSLKEA
KEPRTQTELRSFLGLANVYRRFIPHFADKAAPLNALLRKGQPPKLDPFTP
VQTESFNSLKDSVVSAPILSLPKPERPFIKDTDASDYQVGCALFQTAPNG
ERSPVGYWSRSLNVHEKNHSVSEKECLAVVWALQTFRPYLMGDHSTVFTD
HASLRWLLSILEPSGGLMRWRLRLAEFGFDVQYGKGSCNTQADALSRLVT
TGEALPVKDDEIPCYAVNGDDATIEGEERDTDSSYSGSELDDILLSEDSE
KPLPGNFVPSTPEEMTREQFADPSCAKVRAQLNGVEQRPVRGYLKMQLIE
*
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mRNA from alignment at tig00004416_pilon:926042..928592+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6759.t1 ID=Gchil6759.t1|Name=Gchil6759.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2551bp|location=Sequence derived from alignment at tig00004416_pilon:926042..928592+ (Gracilaria chilensis NLEC103_M9 male)
atggtgcgacttcttaccgtcttagacaccggtgccggtccgaactttgt
cgtggaggaagtgttaccgcctgctttgcagtctaggatccgccacgacc
acgtcccggaggtcgctgacgcgaacaacaaaccgttggatacggtggag
ttcatagaactggtagtccgcgttggctctcgcgtggtgaaactcgactt
cgtcgtatgtcggaaattagccgccccagtcatcttgggtttcgactttt
gcgaccgcttcgtcgaagcgatcttcccccgccaacggcgtgtcgagatg
gaggatggatcgtccactctgatcgttcgtcgtccgctcaggcgtaccac
gaagaagcatgtccccgctaccggcagcacaggaacctggaccggataac
catgaatctaataagctccgcgtggcagcgtcgttgtgcgtcccgcctga
gtcccaaatgatggtgaaagtaacctcccgtcaacacggaccccgggtct
tgcaaccattgttgtcagtgtatgacaggcacagcctctcaattgcgaat
ggaatcgtccatgtggagccaaaccaaccgtttcacgtgctgatcgccaa
tctagggactgtaacccagtatctggtgaagaaccaagtgatagggtccg
tcatgccgcaccccatcgctatggtgcctacaaagctgaccgcagctgac
gttctcggactcgttcactctaaggagggggacagcccggaacccgtttg
atcaccggtacccggggttcaacctgtaacatcagggacgcagcccgttt
caacgagtggtgaccgccccgatccagtcaaagaactcgaggacctggat
ctcagccacgtcccggagtcataccgccatcgattgcgagaacttttaag
ggacttcaccactatttgggacggctcccttggtgagattgccactacgg
aacaccggattgatttgctaccggacacttgacccatctctcagcaccca
taccgtgccggacccgccgcacgcgcggaggaaaggacacaagaggataa
aatgattcgagcaggagtcattgaaccggctcagtcgccgtgggcttctc
cagtagtactggctccaaagcaggatggttcctggaggttttgcttcgac
taccgtcggttgaatgccgtcactgtcaaggacgtgtatctaatctcaag
aatggacgagtacattgactcgctgggcacggccaccgtctttacaaccc
ttgacgccaattggggatactggcaagttccggtaaggaagcaagaccag
gataaaacctctttcgcgtgtcactttggtctctaccgtttcaaacggat
gccttttggtcttaccaacgcccccgctacttcctaacgagccatcgaca
tcctattggcccgcttcaaatgtcgtacctgcctggtctacctggatgac
ataatcgtcttctcagacaacctggacaaacatctcactcatgtgaggga
tatcatggccacgctacgagatgcgtgtgtcactcttaagatgaagaatt
gtgacttcttcacggacaccgtgaagtatctcggccatgttatccgtcca
ggacgtgttacaatcgaggagactcgtgttaagtcactcaaagaggctaa
agaaccgcggacgcaaaccgagcttcgttcctttctgggactcgcgaacg
tctaccgacgattcatcccgcactttgcggacaaggctgcaccgttaaac
gcgcttttgcggaaaggccaaccaccaaaactggaccccttcacccccgt
tcaaacggaatctttcaactctcttaaggattccgtcgtctccgccccga
tcctctcgttgcccaagcctgaaaggcccttcatcaaggatacggacgcc
agcgactaccaagtaggttgtgcactgtttcaaactgcacccaatgggga
aagaagccccgtcgggtactggtcccgatcgctcaacgtccacgagaaga
atcactccgtctcggagaaggaatgccttgcagtagtgtgggccttacaa
acgttccgcccctacctcatgggtgatcattccaccgtttttacggacca
cgcatcacttcgatggctactctccatcttggagccttcaggcggcttga
tgcgttggcgtctccgtctagcggaatttggctttgacgtgcagtacgga
aaaggatcgtgcaacacccaagccgatgctctctcccgcctggtcactac
tggcgaagcactacccgtcaaagacgatgaaataccctgctatgcagtga
atggcgacgacgctaccatcgagggcgaggaacgagacacggactcttca
tattccggttccgaattagacgacattcttctctcggaagattccgagaa
acccttaccaggcaacttcgtgcctagtactccagaagagatgacacggg
agcaattcgctgacccatcctgcgcgaaggtccgcgctcaactcaatggt
gtagagcaacgcccagttaggggatacttgaagatgcaactcatagaatg
a
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Coding sequence (CDS) from alignment at tig00004416_pilon:926042..928592+

>Gchil6759.t1 ID=Gchil6759.t1|Name=Gchil6759.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1653bp|location=Sequence derived from alignment at tig00004416_pilon:926042..928592+ (Gracilaria chilensis NLEC103_M9 male)
atggtgcgacttcttaccgtcttagacaccggtgccggtccgaactttgt
cgtggaggaagtgttaccgcctgctttgcagtctaggatccgccacgacc
acgtcccggaggtcgctgacgcgaacaacaaaccgttggatacggtggag
ttcatagaactggtagtccgcgttggctctcgcgtggtgaaactcgactt
cgtccacccataccgtgccggacccgccgcacgcgcggaggaaaggacac
aagaggataaaatgattcgagcaggagtcattgaaccggctcagtcgccg
tgggcttctccagtagtactggctccaaagcaggatggttcctggaggtt
ttgcttcgactaccgtcggttgaatgccgtcactgtcaaggacgtgtatc
taatctcaagaatggacgagtacattgactcgctgggcacggccaccgtc
tttacaacccttgacgccaattggggatactggcaagttccggtaaggaa
gcaagaccaggataaaacctctttcgcgtgtcactttggtctctaccgtt
tcaaacggatgccttttgacaacctggacaaacatctcactcatgtgagg
gatatcatggccacgctacgagatgcgtgtgtcactcttaagatgaagaa
ttgtgacttcttcacggacaccgtgaagtatctcggccatgttatccgtc
caggacgtgttacaatcgaggagactcgtgttaagtcactcaaagaggct
aaagaaccgcggacgcaaaccgagcttcgttcctttctgggactcgcgaa
cgtctaccgacgattcatcccgcactttgcggacaaggctgcaccgttaa
acgcgcttttgcggaaaggccaaccaccaaaactggaccccttcaccccc
gttcaaacggaatctttcaactctcttaaggattccgtcgtctccgcccc
gatcctctcgttgcccaagcctgaaaggcccttcatcaaggatacggacg
ccagcgactaccaagtaggttgtgcactgtttcaaactgcacccaatggg
gaaagaagccccgtcgggtactggtcccgatcgctcaacgtccacgagaa
gaatcactccgtctcggagaaggaatgccttgcagtagtgtgggccttac
aaacgttccgcccctacctcatgggtgatcattccaccgtttttacggac
cacgcatcacttcgatggctactctccatcttggagccttcaggcggctt
gatgcgttggcgtctccgtctagcggaatttggctttgacgtgcagtacg
gaaaaggatcgtgcaacacccaagccgatgctctctcccgcctggtcact
actggcgaagcactacccgtcaaagacgatgaaataccctgctatgcagt
gaatggcgacgacgctaccatcgagggcgaggaacgagacacggactctt
catattccggttccgaattagacgacattcttctctcggaagattccgag
aaacccttaccaggcaacttcgtgcctagtactccagaagagatgacacg
ggagcaattcgctgacccatcctgcgcgaaggtccgcgctcaactcaatg
gtgtagagcaacgcccagttaggggatacttgaagatgcaactcatagaa
tga
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