Gchil6692.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6692.t1
Unique NameGchil6692.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length358
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:356224..357297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38727.Pavir.J10049.1.p
PFAMsTrehalose_PPase
Max annot lvl35493|Streptophyta
KEGG rclassRC00017
KEGG koko:K01087
KEGG ReactionR02778
KEGG Pathwayko00500,ko01100,map00500,map01100
GOsGO:0003674,GO:0003824,GO:0004805,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009507,GO:0009536,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0030312,GO:0031974,GO:0031981,GO:0034637,GO:0042221,GO:0042578,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046351,GO:0046686,GO:0050896,GO:0070013,GO:0071704,GO:0071944,GO:1901576
Evalue2.11e-61
EggNOG OGsCOG1877@1|root,KOG1050@2759|Eukaryota,37JPC@33090|Viridiplantae,3GB9D@35493|Streptophyta,3M37E@4447|Liliopsida,3I8AM@38820|Poales
EC3.1.3.12
DescriptionRemoves the phosphate from trehalose 6-phosphate to produce free trehalose
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6692Gchil6692Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 356224..357297 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6692.t1.start1Gchil6692.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 356224..356226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6692.t1.CDS1Gchil6692.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 356224..357297 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6692.t1.exon1Gchil6692.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 356224..357297 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6692.t1.stop1Gchil6692.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 357295..357297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6692.t1Gchil6692.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 356224..357297 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6692.t1 ID=Gchil6692.t1|Name=Gchil6692.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=358bp
MSAATAGAAGATGAASPPADAECATTAAVVAAAAAGAQECAAALLQQNQQ
QCATRGARAASSLPRALDAVDKLVAQLARQRRRVVFFLDYDGTLSPIVED
PERAVLPEETRHALRMISSRFTTAIVSGRSKDKVRALVDVRGLIYAGSHG
FDIEAPHGDVSHRVAAEFVPKLRAARGELTRAARSLQGATVEDNLLAVSF
HYRRCAAQCAGEVRELAERVARQHGLRLTHGKKVYELRPQIDWHKGKAVE
YLLRVLQLEGAHVLPIYIGDDTTDEDAFSVLRARGLSIVVDDGAAPRSTM
ADLRLHDPDEVCRFLLRFADDALAEAQLQHVAPTRRDRSPHSLPLPHPLL
HHRHSPQ*
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spliced messenger RNA

>Gchil6692.t1 ID=Gchil6692.t1|Name=Gchil6692.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00004416_pilon:356224..357297+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCgcagcgactgcgggtgcggcgggcgcgacgggcgcggcgtcgcc
gccagcagacgccgagtgtgcgaccaccgcagccgtggtggcggcagcgg
cggcCGGAGCGCAAGAATGCGCCGCCGCTTTGTTGCAGCAAAACCAGCAA
CAGTGCGCAACAAGAGGCGCGCGGGCGGCATCGTCGCTGCCGCGCGCACT
GGACGCAGTGGACAAGCTGGTGGCGCAACTGGCGCGCCAGCGTCGCCGCG
TGGTGTTCTTCCTGGACTATGACGGCACGCTGTCGCCCATCGTGGAGGAC
CCGGAGCGTGCAGTGCTGCCTGAAGAAACGCGACACGCGTTGCGCATGAT
CTCGTCGCGCTTCACAACGGCCATTGTGTCGGGTCGTTCCAAGGACAAAG
TACGCGCGCTGGTGGACGTGCGCGGGCTTATCTACGCCGGGTCGCACGGC
TTCGACATCGAGGCGCCACACGGAGACGTGTCACATCGCGTGGCAGCGGA
GTTTGTGCCCAAGCTACGCGCGGCACGCGGCGAACTCACACGCGCGGCGC
GCTCGCTGCAGGGCGCCACGGTGGAGGACAACCTGTTGGCTGTGTCTTTC
CATTATCGACGGTGCGCGGCGCAGTGCGCGGGCGAGGTACGCGAGTTGGC
GGAGCGCGTGGCCAGACAGCACGGGCTGCGACTGACGCACGGCAAGAAGG
TGTACGAGCTGCGGCCGCAAATCGACTGGCATAAGGGCAAGGCCGTCGAG
TATTTGCTGCGCGTGTTGCAGCTGGAGGGCGCGCACGTGCTGCCCATCTA
CATCGGCGACGATACCACGGACGAGGATGCCTTCAGCGTGTTGCGCGCGC
GCGGACTGTCCATTGTGGTGGACGACGGAGCCGCGCCGCGCTCCACCATG
GCCGACCTTCGTCTGCACGATCCGGACGAGGTGTGCCGCTTCCTGTTGCG
CTTTGCCGACGACGCGCTGGCCGAAGCGCAGCTGCAGCACGTGGCGCCGA
CGCGTCGCGACCGCTCCCCACATTCTCTCCCTCTCCCTCATCCTCTTCTT
CATCATCGTCATTCTCCTCAGTAA
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protein sequence of Gchil6692.t1

>Gchil6692.t1 ID=Gchil6692.t1|Name=Gchil6692.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=358bp
MSAATAGAAGATGAASPPADAECATTAAVVAAAAAGAQECAAALLQQNQQ
QCATRGARAASSLPRALDAVDKLVAQLARQRRRVVFFLDYDGTLSPIVED
PERAVLPEETRHALRMISSRFTTAIVSGRSKDKVRALVDVRGLIYAGSHG
FDIEAPHGDVSHRVAAEFVPKLRAARGELTRAARSLQGATVEDNLLAVSF
HYRRCAAQCAGEVRELAERVARQHGLRLTHGKKVYELRPQIDWHKGKAVE
YLLRVLQLEGAHVLPIYIGDDTTDEDAFSVLRARGLSIVVDDGAAPRSTM
ADLRLHDPDEVCRFLLRFADDALAEAQLQHVAPTRRDRSPHSLPLPHPLL
HHRHSPQ*
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mRNA from alignment at tig00004416_pilon:356224..357297+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6692.t1 ID=Gchil6692.t1|Name=Gchil6692.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00004416_pilon:356224..357297+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCgcagcgactgcgggtgcggcgggcgcgacgggcgcggcgtcgcc
gccagcagacgccgagtgtgcgaccaccgcagccgtggtggcggcagcgg
cggcCGGAGCGCAAGAATGCGCCGCCGCTTTGTTGCAGCAAAACCAGCAA
CAGTGCGCAACAAGAGGCGCGCGGGCGGCATCGTCGCTGCCGCGCGCACT
GGACGCAGTGGACAAGCTGGTGGCGCAACTGGCGCGCCAGCGTCGCCGCG
TGGTGTTCTTCCTGGACTATGACGGCACGCTGTCGCCCATCGTGGAGGAC
CCGGAGCGTGCAGTGCTGCCTGAAGAAACGCGACACGCGTTGCGCATGAT
CTCGTCGCGCTTCACAACGGCCATTGTGTCGGGTCGTTCCAAGGACAAAG
TACGCGCGCTGGTGGACGTGCGCGGGCTTATCTACGCCGGGTCGCACGGC
TTCGACATCGAGGCGCCACACGGAGACGTGTCACATCGCGTGGCAGCGGA
GTTTGTGCCCAAGCTACGCGCGGCACGCGGCGAACTCACACGCGCGGCGC
GCTCGCTGCAGGGCGCCACGGTGGAGGACAACCTGTTGGCTGTGTCTTTC
CATTATCGACGGTGCGCGGCGCAGTGCGCGGGCGAGGTACGCGAGTTGGC
GGAGCGCGTGGCCAGACAGCACGGGCTGCGACTGACGCACGGCAAGAAGG
TGTACGAGCTGCGGCCGCAAATCGACTGGCATAAGGGCAAGGCCGTCGAG
TATTTGCTGCGCGTGTTGCAGCTGGAGGGCGCGCACGTGCTGCCCATCTA
CATCGGCGACGATACCACGGACGAGGATGCCTTCAGCGTGTTGCGCGCGC
GCGGACTGTCCATTGTGGTGGACGACGGAGCCGCGCCGCGCTCCACCATG
GCCGACCTTCGTCTGCACGATCCGGACGAGGTGTGCCGCTTCCTGTTGCG
CTTTGCCGACGACGCGCTGGCCGAAGCGCAGCTGCAGCACGTGGCGCCGA
CGCGTCGCGACCGCTCCCCACATTCTCTCCCTCTCCCTCATCCTCTTCTT
CATCATCGTCATTCTCCTCAGTAA
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Coding sequence (CDS) from alignment at tig00004416_pilon:356224..357297+

>Gchil6692.t1 ID=Gchil6692.t1|Name=Gchil6692.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1074bp|location=Sequence derived from alignment at tig00004416_pilon:356224..357297+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCgcagcgactgcgggtgcggcgggcgcgacgggcgcggcgtcgcc
gccagcagacgccgagtgtgcgaccaccgcagccgtggtggcggcagcgg
cggcCGGAGCGCAAGAATGCGCCGCCGCTTTGTTGCAGCAAAACCAGCAA
CAGTGCGCAACAAGAGGCGCGCGGGCGGCATCGTCGCTGCCGCGCGCACT
GGACGCAGTGGACAAGCTGGTGGCGCAACTGGCGCGCCAGCGTCGCCGCG
TGGTGTTCTTCCTGGACTATGACGGCACGCTGTCGCCCATCGTGGAGGAC
CCGGAGCGTGCAGTGCTGCCTGAAGAAACGCGACACGCGTTGCGCATGAT
CTCGTCGCGCTTCACAACGGCCATTGTGTCGGGTCGTTCCAAGGACAAAG
TACGCGCGCTGGTGGACGTGCGCGGGCTTATCTACGCCGGGTCGCACGGC
TTCGACATCGAGGCGCCACACGGAGACGTGTCACATCGCGTGGCAGCGGA
GTTTGTGCCCAAGCTACGCGCGGCACGCGGCGAACTCACACGCGCGGCGC
GCTCGCTGCAGGGCGCCACGGTGGAGGACAACCTGTTGGCTGTGTCTTTC
CATTATCGACGGTGCGCGGCGCAGTGCGCGGGCGAGGTACGCGAGTTGGC
GGAGCGCGTGGCCAGACAGCACGGGCTGCGACTGACGCACGGCAAGAAGG
TGTACGAGCTGCGGCCGCAAATCGACTGGCATAAGGGCAAGGCCGTCGAG
TATTTGCTGCGCGTGTTGCAGCTGGAGGGCGCGCACGTGCTGCCCATCTA
CATCGGCGACGATACCACGGACGAGGATGCCTTCAGCGTGTTGCGCGCGC
GCGGACTGTCCATTGTGGTGGACGACGGAGCCGCGCCGCGCTCCACCATG
GCCGACCTTCGTCTGCACGATCCGGACGAGGTGTGCCGCTTCCTGTTGCG
CTTTGCCGACGACGCGCTGGCCGAAGCGCAGCTGCAGCACGTGGCGCCGA
CGCGTCGCGACCGCTCCCCACATTCTCTCCCTCTCCCTCATCCTCTTCTT
CATCATCGTCATTCTCCTCAGTAA
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