Gchil6730.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6730.t1
Unique NameGchil6730.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length274
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:661684..662505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G8U0
PFAMsMem_trans
Max annot lvl2759|Eukaryota
KEGG koko:K07088
Evalue5.29e-19
EggNOG OGsCOG0679@1|root,KOG2722@2759|Eukaryota
Descriptionauxin efflux carrier
COG categoryB
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6730Gchil6730Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 661684..662505 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6730.t1.start1Gchil6730.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 661684..661686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6730.t1.CDS1Gchil6730.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 661684..662505 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6730.t1.exon1Gchil6730.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 661684..662505 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6730.t1.stop1Gchil6730.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 662503..662505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6730.t1Gchil6730.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 661684..662505 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6730.t1 ID=Gchil6730.t1|Name=Gchil6730.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=274bp
MALLPLAAVLHVVAGALLAVLLARVLALNAPERRLFLVCGAFGNAAAMPL
LLCAALFSDVARAKSVAAVSLYLLGWSPLFWSVGYVALAAMSSSQRSSPS
SSMSPSRFASKLFTPPLVAALSALLISLIPPLRALLFRTPIPAALQTLGS
GYSAAAVLVLAGSLARPQPKFQSGASSLRIGRMAFGLSLCRFLFLPVLAY
LVVSRISIGDAFVKFALLLQSVMPCAQNVTVMLTLQGEHEAAAVAARLLL
AVYIIGVVPITLALTVFLSASGL*
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spliced messenger RNA

>Gchil6730.t1 ID=Gchil6730.t1|Name=Gchil6730.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=822bp|location=Sequence derived from alignment at tig00004416_pilon:661684..662505+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTGTTGCCGCTCGCGGCTGTCTTGCACGTCGTCGCTGGCGCTTT
GCTTGCCGTGCTGCTGGCGCGCGTCCTGGCGCTCAATGCACCTGAGCGGC
GCTTGTTCTTGGTGTGTGGCGCGTTTGGTAACGCCGCTGCCATGCCGTTG
TTGCTGTGCGCCGCGCTGTTTAGCGACGTTGCGCGCGCGAAGAGCGTGGC
GGCCGTGTCGTTGTATCTCTTAGGTTGGTCACCGCTATTCTGGTCGGTGG
GTTAcgtcgccctggccgccatgtcttcttcgcagcgatcgtcgccgtcg
tcttccatgtcaccgtcgcGTTTCGCTTCCAAGCTGTTTACGCCGCCGCT
CGTCGCCGCGCTCAGCGCCCTACTCATCTCGCTTATCCCGCCTTTGCGCG
CGCTGCTGTTCCGCACACCCATCCCGGCCGCACTGCAAACGCTGGGCTCG
GGCTATTCTGCCGCCGCCGTGCTCGTGCTGGCCGGTTCGCTGGCGCGTCC
ACAACCAAAGTTTCAAAGCGGTGCATCGTCGCTTCGCATCGGTCGCATGG
CGTTTGGACTTTCGCTGTGTCGTTTCTTGTTTCTTCCCGTGCTGGCGTAC
TTGGTGGTTTCTCGCATCAGTATCGGCGATGCTTTTGTCAAGTTTGCGCT
CTTGTTGCAGAGCGTAATGCCGTGTGCGCAGAACGTGACTGTAATGCTCA
CGTTACAAGGCGAGCATGAGGCTGCCGCCGTCGCCGCCCGCCTGTTGCTG
GCCGTTTATATCATTGGCGTTGTGCCCATCACGCTAGCGCTCACTGTTTT
TCTATCCGCCTCGGGACTGTGA
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protein sequence of Gchil6730.t1

>Gchil6730.t1 ID=Gchil6730.t1|Name=Gchil6730.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=274bp
MALLPLAAVLHVVAGALLAVLLARVLALNAPERRLFLVCGAFGNAAAMPL
LLCAALFSDVARAKSVAAVSLYLLGWSPLFWSVGYVALAAMSSSQRSSPS
SSMSPSRFASKLFTPPLVAALSALLISLIPPLRALLFRTPIPAALQTLGS
GYSAAAVLVLAGSLARPQPKFQSGASSLRIGRMAFGLSLCRFLFLPVLAY
LVVSRISIGDAFVKFALLLQSVMPCAQNVTVMLTLQGEHEAAAVAARLLL
AVYIIGVVPITLALTVFLSASGL*
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mRNA from alignment at tig00004416_pilon:661684..662505+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6730.t1 ID=Gchil6730.t1|Name=Gchil6730.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=822bp|location=Sequence derived from alignment at tig00004416_pilon:661684..662505+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCTGTTGCCGCTCGCGGCTGTCTTGCACGTCGTCGCTGGCGCTTT
GCTTGCCGTGCTGCTGGCGCGCGTCCTGGCGCTCAATGCACCTGAGCGGC
GCTTGTTCTTGGTGTGTGGCGCGTTTGGTAACGCCGCTGCCATGCCGTTG
TTGCTGTGCGCCGCGCTGTTTAGCGACGTTGCGCGCGCGAAGAGCGTGGC
GGCCGTGTCGTTGTATCTCTTAGGTTGGTCACCGCTATTCTGGTCGGTGG
GTTAcgtcgccctggccgccatgtcttcttcgcagcgatcgtcgccgtcg
tcttccatgtcaccgtcgcGTTTCGCTTCCAAGCTGTTTACGCCGCCGCT
CGTCGCCGCGCTCAGCGCCCTACTCATCTCGCTTATCCCGCCTTTGCGCG
CGCTGCTGTTCCGCACACCCATCCCGGCCGCACTGCAAACGCTGGGCTCG
GGCTATTCTGCCGCCGCCGTGCTCGTGCTGGCCGGTTCGCTGGCGCGTCC
ACAACCAAAGTTTCAAAGCGGTGCATCGTCGCTTCGCATCGGTCGCATGG
CGTTTGGACTTTCGCTGTGTCGTTTCTTGTTTCTTCCCGTGCTGGCGTAC
TTGGTGGTTTCTCGCATCAGTATCGGCGATGCTTTTGTCAAGTTTGCGCT
CTTGTTGCAGAGCGTAATGCCGTGTGCGCAGAACGTGACTGTAATGCTCA
CGTTACAAGGCGAGCATGAGGCTGCCGCCGTCGCCGCCCGCCTGTTGCTG
GCCGTTTATATCATTGGCGTTGTGCCCATCACGCTAGCGCTCACTGTTTT
TCTATCCGCCTCGGGACTGTGA
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Coding sequence (CDS) from alignment at tig00004416_pilon:661684..662505+

>Gchil6730.t1 ID=Gchil6730.t1|Name=Gchil6730.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=822bp|location=Sequence derived from alignment at tig00004416_pilon:661684..662505+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCTGTTGCCGCTCGCGGCTGTCTTGCACGTCGTCGCTGGCGCTTT
GCTTGCCGTGCTGCTGGCGCGCGTCCTGGCGCTCAATGCACCTGAGCGGC
GCTTGTTCTTGGTGTGTGGCGCGTTTGGTAACGCCGCTGCCATGCCGTTG
TTGCTGTGCGCCGCGCTGTTTAGCGACGTTGCGCGCGCGAAGAGCGTGGC
GGCCGTGTCGTTGTATCTCTTAGGTTGGTCACCGCTATTCTGGTCGGTGG
GTTAcgtcgccctggccgccatgtcttcttcgcagcgatcgtcgccgtcg
tcttccatgtcaccgtcgcGTTTCGCTTCCAAGCTGTTTACGCCGCCGCT
CGTCGCCGCGCTCAGCGCCCTACTCATCTCGCTTATCCCGCCTTTGCGCG
CGCTGCTGTTCCGCACACCCATCCCGGCCGCACTGCAAACGCTGGGCTCG
GGCTATTCTGCCGCCGCCGTGCTCGTGCTGGCCGGTTCGCTGGCGCGTCC
ACAACCAAAGTTTCAAAGCGGTGCATCGTCGCTTCGCATCGGTCGCATGG
CGTTTGGACTTTCGCTGTGTCGTTTCTTGTTTCTTCCCGTGCTGGCGTAC
TTGGTGGTTTCTCGCATCAGTATCGGCGATGCTTTTGTCAAGTTTGCGCT
CTTGTTGCAGAGCGTAATGCCGTGTGCGCAGAACGTGACTGTAATGCTCA
CGTTACAAGGCGAGCATGAGGCTGCCGCCGTCGCCGCCCGCCTGTTGCTG
GCCGTTTATATCATTGGCGTTGTGCCCATCACGCTAGCGCTCACTGTTTT
TCTATCCGCCTCGGGACTGTGA
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