Gchil6788.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6788.t1
Unique NameGchil6788.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length492
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:1183415..1184890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6788Gchil6788Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 1183415..1184890 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6788.t1.stop1Gchil6788.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 1183415..1183417 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6788.t1.CDS1Gchil6788.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1183415..1184890 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6788.t1.exon1Gchil6788.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1183415..1184890 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6788.t1.start1Gchil6788.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 1184888..1184890 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6788.t1Gchil6788.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 1183415..1184890 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6788.t1 ID=Gchil6788.t1|Name=Gchil6788.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=492bp
MPPELAASTALATSSVDSDAPLWVTNDIINPLHLPNFDHAAERRHRRIFR
IPDRGGAIANWLYTRPEPEAISEDAFRKSAIESTTVFRMEGLSRDGHAIT
ITPSLSSHWLMVPVQSLNGFTMGIAFLDILFQREKSDNTVPPLPVGRFVL
EDATGEVFVTGWTDDIMICGWIQSVISCERVRELLLYKAPAFNGLKPTQL
LLRNSFFERRACHLCGHGRTFSSLPHPCFGRNKRPESLSSIMDNITNVSS
VYRRFRGAYFGLCIKTNFSSGQTTKELQPVFIDIRHGLPSIRGRLYNSLR
KNVAFEIPLTSYFGLHPSASSKLLYFQPEPVEVGYPLITLPEEGKNGPPL
EESSHTSYPHVPSPQSIQRESASASSDGVVNGAKGPRRRRRVDDEIGRMS
AAHRRRVRNRESAQRSNQLRKQRLAQDRSELNQYKAIIPALKKKYEELLK
EQISLLLDASLRGYQDAIEHIVSRKSLDVFGQQDLKMSEEC*
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spliced messenger RNA

>Gchil6788.t1 ID=Gchil6788.t1|Name=Gchil6788.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1476bp|location=Sequence derived from alignment at tig00004416_pilon:1183415..1184890- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCCCGAGCTCGCCGCCAGCACTGCACTCGCCACCTCCAGCGTCGA
TAGCGACGCCCCACTATGGGTCACTAATGACATCATCAACCCTCTTCATC
TCCCCAACTTTGACCACGCCGCCGAGCGCCGCCACCGCCGCATTTTTCGC
ATACCCGACAGAGGCGGAGCCATTGCCAACTGGCTCTACACCCGACCCGA
GCCCGAAGCCATCAGCGAGGATGCCTTCCGCAAAAGCGCCATTGAAAGCA
CCACTGTGTTTCGCATGGAAGGTCTCTCGCGCGATGGCCACGCCATCACC
ATTACCCCTTCCCTCTCCAGCCACTGGCTCATGGTGCCCGTTCAATCCCT
GAACGGTTTCACCATGGGTATCGCCTTCCTCGACATTCTCTTCCAGAGGG
AAAAATCCGATAACACCGTTCCCCCGCTCCCGGTCGGCCGCTTTGTTCTC
GAGGACGCCACGGGCGAGGTCTTCGTCACTGGCTGGACCGACGACATCAT
GATCTGCGGTTGGATTCAAAGCGTCATCAGCTGCGAACGCGTGCGCGAAC
TCCTACTCTATAAAGCGCCTGCCTTTAACGGTCTCAAACCTACCCAGTTG
CTTTTACGCAACTCTTTTTTCGAGAGACGGGCATGTCATCTCTGCGGACA
CGGGCGTACCTTCTCCTCCTTACCCCACCCTTGTTTTGGTCGCAACAAGC
GCCCAGAGTCGCTTTCATCTATCATGGATAACATCACCAACGTCTCTAGC
GTGTATCGTCGTTTTCGAGGCGCATACTTTGGTCTTTGCATCAAGACAAA
CTTCTCCTCCGGCCAAACCACCAAAGAGTTACAGCCTGTGTTTATCGACA
TCCGGCACGGTTTGCCGTCCATAAGAGGTCGCCTTTACAATTCTCTTCGC
AAGAATGTTGCGTTTGAAATCCCCCTCACCTCTTACTTTGGTCTGCACCC
GTCGGCATCGTCCAAATTGCTCTACTTCCAGCCCGAGCCCGTGGAGGTTG
GGTACCCGTTGATTACTCTGCCAGAAGAAGGGAAAAATGGGCCGCCTTTG
GAAGAGTCTTCACACACCAGCTATCCACATGTCCCATCTCCACAAAGTAT
TCAGCGCGAGAGTGCCTCAGCATCGTCGGACGGTGTTGTCAATGGAGCCA
AAGGTCCTCGTCGACGACGACGCGTCGATGATGAAATTGGAAGAATGTCT
GCAGCGCATAGAAGAAGGGTCAGAAATCGTGAGTCCGCTCAGCGAAGCAA
CCAACTTCGTAAACAACGCCTTGCCCAGGATCGTTCAGAGCTCAATCAAT
ACAAAGCCATTATACCGGCTCTGAAAAAGAAATACGAAGAGCTTTTAAAA
GAACAAATATCATTACTGTTAGATGCCTCTTTAAGAGGCTATCAAGATGC
TATCGAACACATCGTCAGCAGGAAGAGCCTAGATGTTTTTGGCCAGCAAG
ACTTGAAAATGTCGGAAGAATGTTAA
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protein sequence of Gchil6788.t1

>Gchil6788.t1 ID=Gchil6788.t1|Name=Gchil6788.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=492bp
MPPELAASTALATSSVDSDAPLWVTNDIINPLHLPNFDHAAERRHRRIFR
IPDRGGAIANWLYTRPEPEAISEDAFRKSAIESTTVFRMEGLSRDGHAIT
ITPSLSSHWLMVPVQSLNGFTMGIAFLDILFQREKSDNTVPPLPVGRFVL
EDATGEVFVTGWTDDIMICGWIQSVISCERVRELLLYKAPAFNGLKPTQL
LLRNSFFERRACHLCGHGRTFSSLPHPCFGRNKRPESLSSIMDNITNVSS
VYRRFRGAYFGLCIKTNFSSGQTTKELQPVFIDIRHGLPSIRGRLYNSLR
KNVAFEIPLTSYFGLHPSASSKLLYFQPEPVEVGYPLITLPEEGKNGPPL
EESSHTSYPHVPSPQSIQRESASASSDGVVNGAKGPRRRRRVDDEIGRMS
AAHRRRVRNRESAQRSNQLRKQRLAQDRSELNQYKAIIPALKKKYEELLK
EQISLLLDASLRGYQDAIEHIVSRKSLDVFGQQDLKMSEEC*
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mRNA from alignment at tig00004416_pilon:1183415..1184890-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6788.t1 ID=Gchil6788.t1|Name=Gchil6788.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1476bp|location=Sequence derived from alignment at tig00004416_pilon:1183415..1184890- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCCCCGAGCTCGCCGCCAGCACTGCACTCGCCACCTCCAGCGTCGA
TAGCGACGCCCCACTATGGGTCACTAATGACATCATCAACCCTCTTCATC
TCCCCAACTTTGACCACGCCGCCGAGCGCCGCCACCGCCGCATTTTTCGC
ATACCCGACAGAGGCGGAGCCATTGCCAACTGGCTCTACACCCGACCCGA
GCCCGAAGCCATCAGCGAGGATGCCTTCCGCAAAAGCGCCATTGAAAGCA
CCACTGTGTTTCGCATGGAAGGTCTCTCGCGCGATGGCCACGCCATCACC
ATTACCCCTTCCCTCTCCAGCCACTGGCTCATGGTGCCCGTTCAATCCCT
GAACGGTTTCACCATGGGTATCGCCTTCCTCGACATTCTCTTCCAGAGGG
AAAAATCCGATAACACCGTTCCCCCGCTCCCGGTCGGCCGCTTTGTTCTC
GAGGACGCCACGGGCGAGGTCTTCGTCACTGGCTGGACCGACGACATCAT
GATCTGCGGTTGGATTCAAAGCGTCATCAGCTGCGAACGCGTGCGCGAAC
TCCTACTCTATAAAGCGCCTGCCTTTAACGGTCTCAAACCTACCCAGTTG
CTTTTACGCAACTCTTTTTTCGAGAGACGGGCATGTCATCTCTGCGGACA
CGGGCGTACCTTCTCCTCCTTACCCCACCCTTGTTTTGGTCGCAACAAGC
GCCCAGAGTCGCTTTCATCTATCATGGATAACATCACCAACGTCTCTAGC
GTGTATCGTCGTTTTCGAGGCGCATACTTTGGTCTTTGCATCAAGACAAA
CTTCTCCTCCGGCCAAACCACCAAAGAGTTACAGCCTGTGTTTATCGACA
TCCGGCACGGTTTGCCGTCCATAAGAGGTCGCCTTTACAATTCTCTTCGC
AAGAATGTTGCGTTTGAAATCCCCCTCACCTCTTACTTTGGTCTGCACCC
GTCGGCATCGTCCAAATTGCTCTACTTCCAGCCCGAGCCCGTGGAGGTTG
GGTACCCGTTGATTACTCTGCCAGAAGAAGGGAAAAATGGGCCGCCTTTG
GAAGAGTCTTCACACACCAGCTATCCACATGTCCCATCTCCACAAAGTAT
TCAGCGCGAGAGTGCCTCAGCATCGTCGGACGGTGTTGTCAATGGAGCCA
AAGGTCCTCGTCGACGACGACGCGTCGATGATGAAATTGGAAGAATGTCT
GCAGCGCATAGAAGAAGGGTCAGAAATCGTGAGTCCGCTCAGCGAAGCAA
CCAACTTCGTAAACAACGCCTTGCCCAGGATCGTTCAGAGCTCAATCAAT
ACAAAGCCATTATACCGGCTCTGAAAAAGAAATACGAAGAGCTTTTAAAA
GAACAAATATCATTACTGTTAGATGCCTCTTTAAGAGGCTATCAAGATGC
TATCGAACACATCGTCAGCAGGAAGAGCCTAGATGTTTTTGGCCAGCAAG
ACTTGAAAATGTCGGAAGAATGTTAA
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Coding sequence (CDS) from alignment at tig00004416_pilon:1183415..1184890-

>Gchil6788.t1 ID=Gchil6788.t1|Name=Gchil6788.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1476bp|location=Sequence derived from alignment at tig00004416_pilon:1183415..1184890- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCCCCGAGCTCGCCGCCAGCACTGCACTCGCCACCTCCAGCGTCGA
TAGCGACGCCCCACTATGGGTCACTAATGACATCATCAACCCTCTTCATC
TCCCCAACTTTGACCACGCCGCCGAGCGCCGCCACCGCCGCATTTTTCGC
ATACCCGACAGAGGCGGAGCCATTGCCAACTGGCTCTACACCCGACCCGA
GCCCGAAGCCATCAGCGAGGATGCCTTCCGCAAAAGCGCCATTGAAAGCA
CCACTGTGTTTCGCATGGAAGGTCTCTCGCGCGATGGCCACGCCATCACC
ATTACCCCTTCCCTCTCCAGCCACTGGCTCATGGTGCCCGTTCAATCCCT
GAACGGTTTCACCATGGGTATCGCCTTCCTCGACATTCTCTTCCAGAGGG
AAAAATCCGATAACACCGTTCCCCCGCTCCCGGTCGGCCGCTTTGTTCTC
GAGGACGCCACGGGCGAGGTCTTCGTCACTGGCTGGACCGACGACATCAT
GATCTGCGGTTGGATTCAAAGCGTCATCAGCTGCGAACGCGTGCGCGAAC
TCCTACTCTATAAAGCGCCTGCCTTTAACGGTCTCAAACCTACCCAGTTG
CTTTTACGCAACTCTTTTTTCGAGAGACGGGCATGTCATCTCTGCGGACA
CGGGCGTACCTTCTCCTCCTTACCCCACCCTTGTTTTGGTCGCAACAAGC
GCCCAGAGTCGCTTTCATCTATCATGGATAACATCACCAACGTCTCTAGC
GTGTATCGTCGTTTTCGAGGCGCATACTTTGGTCTTTGCATCAAGACAAA
CTTCTCCTCCGGCCAAACCACCAAAGAGTTACAGCCTGTGTTTATCGACA
TCCGGCACGGTTTGCCGTCCATAAGAGGTCGCCTTTACAATTCTCTTCGC
AAGAATGTTGCGTTTGAAATCCCCCTCACCTCTTACTTTGGTCTGCACCC
GTCGGCATCGTCCAAATTGCTCTACTTCCAGCCCGAGCCCGTGGAGGTTG
GGTACCCGTTGATTACTCTGCCAGAAGAAGGGAAAAATGGGCCGCCTTTG
GAAGAGTCTTCACACACCAGCTATCCACATGTCCCATCTCCACAAAGTAT
TCAGCGCGAGAGTGCCTCAGCATCGTCGGACGGTGTTGTCAATGGAGCCA
AAGGTCCTCGTCGACGACGACGCGTCGATGATGAAATTGGAAGAATGTCT
GCAGCGCATAGAAGAAGGGTCAGAAATCGTGAGTCCGCTCAGCGAAGCAA
CCAACTTCGTAAACAACGCCTTGCCCAGGATCGTTCAGAGCTCAATCAAT
ACAAAGCCATTATACCGGCTCTGAAAAAGAAATACGAAGAGCTTTTAAAA
GAACAAATATCATTACTGTTAGATGCCTCTTTAAGAGGCTATCAAGATGC
TATCGAACACATCGTCAGCAGGAAGAGCCTAGATGTTTTTGGCCAGCAAG
ACTTGAAAATGTCGGAAGAATGTTAA
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