Gchil6789.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6789.t2
Unique NameGchil6789.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length133
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:1185303..1185952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705980.1
Preferred namePXMP2
PFAMsMpv17_PMP22
Max annot lvl2759|Eukaryota
KEGG koko:K13347,ko:K13348
KEGG Pathwayko04146,map04146
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0015267,GO:0015711,GO:0015849,GO:0016020,GO:0016021,GO:0022803,GO:0022857,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0032991,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0098588,GO:0098805
Evalue2.49e-13
EggNOG OGsKOG1944@1|root,KOG1944@2759|Eukaryota
DescriptionBelongs to the peroxisomal membrane protein PXMP2 4 family
COG categoryC
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6789Gchil6789Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 1185303..1186052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6789.t2Gchil6789.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 1185303..1185952 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6789.t2.start1Gchil6789.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 1185303..1185305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6789.t2.CDS1Gchil6789.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1185303..1185404 +
Gchil6789.t2.CDS2Gchil6789.t2.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1185509..1185624 +
Gchil6789.t2.CDS3Gchil6789.t2.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1185772..1185952 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6789.t2.exon1Gchil6789.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1185303..1185404 +
Gchil6789.t2.exon2Gchil6789.t2.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1185509..1185624 +
Gchil6789.t2.exon3Gchil6789.t2.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1185772..1185952 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6789.t2.intron1Gchil6789.t2.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 1185405..1185508 +
Gchil6789.t2.intron2Gchil6789.t2.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 1185625..1185771 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6789.t2.stop1Gchil6789.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 1185950..1185952 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6789.t2 ID=Gchil6789.t2|Name=Gchil6789.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=133bp
MLPPPSRLSLPSVVLWLAWRSYLRKLQVDPLLTKSITAAVLSVLSEVAAK
RLNNLPLKSSTAIHELTIGLVLRCRQAATRSIRVRPHVHVALLLCAWLER
GSQSVMHHKKTQKGPLPNHEEQLGAVAACQSR*
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spliced messenger RNA

>Gchil6789.t2 ID=Gchil6789.t2|Name=Gchil6789.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=399bp|location=Sequence derived from alignment at tig00004416_pilon:1185303..1185952+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCCACCTCCGTCGCGCTTGTCGCTGCCTTCCGTCGTGCTGTGGCT
GGCATGGAGGTCGTACCTCCGAAAGCTGCAGGTGGACCCCCTGCTCACCA
AGTCCATCACCGCGGCTGTGCTTTCCGTGCTCAGCGAGGTCGCGGCGAAG
CGCCTCAACAATCTACCGCTCAAGTCCAGTACAGCCATCCATGAGCTTAC
CATCGGCCTCGTCCTTCGTTGCCGCCAAGCTGCTACTCGATCAATTCGTG
TTCGCCCCCATGTTCACGTCGCTCTACTTTTATGTGCGTGGCTTGAGCGA
GGATCGCAGTCTGTCATGCACCACAAAAAGACTCAGAAAGGACCTCTTCC
AAATCATGAAGAGCAATTGGGCGCTGTGGCTGCCTGCCAATCTCGTTAA
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protein sequence of Gchil6789.t2

>Gchil6789.t2 ID=Gchil6789.t2|Name=Gchil6789.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=133bp
MLPPPSRLSLPSVVLWLAWRSYLRKLQVDPLLTKSITAAVLSVLSEVAAK
RLNNLPLKSSTAIHELTIGLVLRCRQAATRSIRVRPHVHVALLLCAWLER
GSQSVMHHKKTQKGPLPNHEEQLGAVAACQSR*
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mRNA from alignment at tig00004416_pilon:1185303..1185952+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6789.t2 ID=Gchil6789.t2|Name=Gchil6789.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=650bp|location=Sequence derived from alignment at tig00004416_pilon:1185303..1185952+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGCCACCTCCGTCGCGCTTGTCGCTGCCTTCCGTCGTGCTGTGGCT
GGCATGGAGGTCGTACCTCCGAAAGCTGCAGGTGGACCCCCTGCTCACCA
AGGTATGATCGCGCGCCAAGTCAGCCGCACGCCCCCATCCCATCCTATCA
TGCACACTGACCGCAATTGGCCGCCACTCTTCCTTCTCCTTGCCATGCCC
CTCTAGTCCATCACCGCGGCTGTGCTTTCCGTGCTCAGCGAGGTCGCGGC
GAAGCGCCTCAACAATCTACCGCTCAAGTCCAGTACAGCCATCCATGAGC
TTACCATCGGCCTCGTCCTTCGGTACGTCGTCGGCCATACGTCACCCACC
CATTGTCGCTTGCTAACCATGAGCGCGCACATCGCCAAGCGGCCCGCTTG
TTCACGCCTTTCACAACTTTCTGGATAACGTTCTGTTCAAGGGCGCAAAT
CAAACATCCGCCCCCGTAGTTGCCGCCAAGCTGCTACTCGATCAATTCGT
GTTCGCCCCCATGTTCACGTCGCTCTACTTTTATGTGCGTGGCTTGAGCG
AGGATCGCAGTCTGTCATGCACCACAAAAAGACTCAGAAAGGACCTCTTC
CAAATCATGAAGAGCAATTGGGCGCTGTGGCTGCCTGCCAATCTCGTTAA
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Coding sequence (CDS) from alignment at tig00004416_pilon:1185303..1185952+

>Gchil6789.t2 ID=Gchil6789.t2|Name=Gchil6789.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=399bp|location=Sequence derived from alignment at tig00004416_pilon:1185303..1185952+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGCCACCTCCGTCGCGCTTGTCGCTGCCTTCCGTCGTGCTGTGGCT
GGCATGGAGGTCGTACCTCCGAAAGCTGCAGGTGGACCCCCTGCTCACCA
AGTCCATCACCGCGGCTGTGCTTTCCGTGCTCAGCGAGGTCGCGGCGAAG
CGCCTCAACAATCTACCGCTCAAGTCCAGTACAGCCATCCATGAGCTTAC
CATCGGCCTCGTCCTTCGTTGCCGCCAAGCTGCTACTCGATCAATTCGTG
TTCGCCCCCATGTTCACGTCGCTCTACTTTTATGTGCGTGGCTTGAGCGA
GGATCGCAGTCTGTCATGCACCACAAAAAGACTCAGAAAGGACCTCTTCC
AAATCATGAAGAGCAATTGGGCGCTGTGGCTGCCTGCCAATCTCGTTAA
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