Gchil6720.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6720.t1
Unique NameGchil6720.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length284
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:532019..532870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMQ214CT
PFAMsAsp_Arg_Hydrox
Max annot lvl2759|Eukaryota
KEGG koko:K00476
Evalue8.51e-78
EggNOG OGsCOG3555@1|root,KOG3696@2759|Eukaryota
EC1.14.11.16
Descriptionpeptide-aspartate beta-dioxygenase activity
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6720Gchil6720Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 532019..532870 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6720.t1.start1Gchil6720.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 532019..532021 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6720.t1.CDS1Gchil6720.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 532019..532870 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6720.t1.exon1Gchil6720.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 532019..532870 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6720.t1.stop1Gchil6720.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 532868..532870 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6720.t1Gchil6720.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 532019..532870 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6720.t1 ID=Gchil6720.t1|Name=Gchil6720.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=284bp
MENEFVGKDISRVLKSFDDVLSGTNLEFGYGTPRHQKATSFIEGLDAKPF
YDDFTSDESSLKWVGHLEQNWETIAHELRTVSSEKDIESRGNNIWVPPVV
EAATTYGPDWRTLVLQDRVWDPINSKLFPKTVKILRDEKAKIPSVEAFFA
KQAPKTGIKLHTDFCNFLLTMHLGLDTPERKSWIEVGGERRYWQNGKALV
FNTSFFHETMNESDDQERRVLLIRFWHPELTQVERQSLNLLFALIDNPDS
PATQKAEAQLREESMRGKVKNRNSRPSGRGFAR*
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spliced messenger RNA

>Gchil6720.t1 ID=Gchil6720.t1|Name=Gchil6720.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00004416_pilon:532019..532870+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAACGAGTTTGTGGGGAAAGACATTTCCCGCGTGTTGAAGTCCTT
CGACGACGTTTTGAGTGGCACAAATTTGGAATTCGGGTATGGAACTCCTC
GTCACCAAAAGGCTACAAGTTTCATCGAAGGGCTTGATGCTAAACCTTTC
TACGACGATTTCACATCCGACGAATCCAGCTTGAAATGGGTGGGGCACCT
TGAGCAGAACTGGGAAACCATTGCCCATGAGCTGAGAACTGTATCTTCAG
AAAAAGATATTGAAAGTCGTGGTAACAATATTTGGGTCCCTCCTGTCGTT
GAGGCCGCCACCACATACGGACCAGACTGGCGAACTCTGGTTCTACAAGA
TAGAGTCTGGGACCCGATAAACTCGAAGTTATTCCCGAAAACAGTGAAGA
TCTTGCGCGACGAAAAAGCAAAAATACCTTCTGTAGAGGCATTTTTCGCC
AAACAAGCACCAAAGACAGGTATAAAACTCCACACAGATTTCTGTAACTT
CCTTCTTACGATGCATCTTGGGCTCGATACGCCAGAAAGAAAATCTTGGA
TCGAAGTTGGAGGTGAAAGAAGATACTGGCAAAACGGAAAGGCTTTGGTT
TTCAACACTAGTTTCTTCCACGAAACAATGAACGAATCCGATGACCAGGA
ACGGCGAGTGCTCCTCATTCGATTCTGGCACCCTGAATTAACTCAAGTTG
AAAGACAGTCTTTGAATCTCTTGTTCGCTCTGATTGACAATCCCGACTCC
CCTGCGACCCAGAAAGCAGAAGCCCAACTACGTGAGGAAAGCATGAGAGG
GAAAGTGAAAAACAGGAACTCGCGACCTTCCGGACGGGGGTTTGCAAGGT
AA
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protein sequence of Gchil6720.t1

>Gchil6720.t1 ID=Gchil6720.t1|Name=Gchil6720.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=284bp
MENEFVGKDISRVLKSFDDVLSGTNLEFGYGTPRHQKATSFIEGLDAKPF
YDDFTSDESSLKWVGHLEQNWETIAHELRTVSSEKDIESRGNNIWVPPVV
EAATTYGPDWRTLVLQDRVWDPINSKLFPKTVKILRDEKAKIPSVEAFFA
KQAPKTGIKLHTDFCNFLLTMHLGLDTPERKSWIEVGGERRYWQNGKALV
FNTSFFHETMNESDDQERRVLLIRFWHPELTQVERQSLNLLFALIDNPDS
PATQKAEAQLREESMRGKVKNRNSRPSGRGFAR*
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mRNA from alignment at tig00004416_pilon:532019..532870+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6720.t1 ID=Gchil6720.t1|Name=Gchil6720.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00004416_pilon:532019..532870+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAACGAGTTTGTGGGGAAAGACATTTCCCGCGTGTTGAAGTCCTT
CGACGACGTTTTGAGTGGCACAAATTTGGAATTCGGGTATGGAACTCCTC
GTCACCAAAAGGCTACAAGTTTCATCGAAGGGCTTGATGCTAAACCTTTC
TACGACGATTTCACATCCGACGAATCCAGCTTGAAATGGGTGGGGCACCT
TGAGCAGAACTGGGAAACCATTGCCCATGAGCTGAGAACTGTATCTTCAG
AAAAAGATATTGAAAGTCGTGGTAACAATATTTGGGTCCCTCCTGTCGTT
GAGGCCGCCACCACATACGGACCAGACTGGCGAACTCTGGTTCTACAAGA
TAGAGTCTGGGACCCGATAAACTCGAAGTTATTCCCGAAAACAGTGAAGA
TCTTGCGCGACGAAAAAGCAAAAATACCTTCTGTAGAGGCATTTTTCGCC
AAACAAGCACCAAAGACAGGTATAAAACTCCACACAGATTTCTGTAACTT
CCTTCTTACGATGCATCTTGGGCTCGATACGCCAGAAAGAAAATCTTGGA
TCGAAGTTGGAGGTGAAAGAAGATACTGGCAAAACGGAAAGGCTTTGGTT
TTCAACACTAGTTTCTTCCACGAAACAATGAACGAATCCGATGACCAGGA
ACGGCGAGTGCTCCTCATTCGATTCTGGCACCCTGAATTAACTCAAGTTG
AAAGACAGTCTTTGAATCTCTTGTTCGCTCTGATTGACAATCCCGACTCC
CCTGCGACCCAGAAAGCAGAAGCCCAACTACGTGAGGAAAGCATGAGAGG
GAAAGTGAAAAACAGGAACTCGCGACCTTCCGGACGGGGGTTTGCAAGGT
AA
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Coding sequence (CDS) from alignment at tig00004416_pilon:532019..532870+

>Gchil6720.t1 ID=Gchil6720.t1|Name=Gchil6720.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=852bp|location=Sequence derived from alignment at tig00004416_pilon:532019..532870+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAACGAGTTTGTGGGGAAAGACATTTCCCGCGTGTTGAAGTCCTT
CGACGACGTTTTGAGTGGCACAAATTTGGAATTCGGGTATGGAACTCCTC
GTCACCAAAAGGCTACAAGTTTCATCGAAGGGCTTGATGCTAAACCTTTC
TACGACGATTTCACATCCGACGAATCCAGCTTGAAATGGGTGGGGCACCT
TGAGCAGAACTGGGAAACCATTGCCCATGAGCTGAGAACTGTATCTTCAG
AAAAAGATATTGAAAGTCGTGGTAACAATATTTGGGTCCCTCCTGTCGTT
GAGGCCGCCACCACATACGGACCAGACTGGCGAACTCTGGTTCTACAAGA
TAGAGTCTGGGACCCGATAAACTCGAAGTTATTCCCGAAAACAGTGAAGA
TCTTGCGCGACGAAAAAGCAAAAATACCTTCTGTAGAGGCATTTTTCGCC
AAACAAGCACCAAAGACAGGTATAAAACTCCACACAGATTTCTGTAACTT
CCTTCTTACGATGCATCTTGGGCTCGATACGCCAGAAAGAAAATCTTGGA
TCGAAGTTGGAGGTGAAAGAAGATACTGGCAAAACGGAAAGGCTTTGGTT
TTCAACACTAGTTTCTTCCACGAAACAATGAACGAATCCGATGACCAGGA
ACGGCGAGTGCTCCTCATTCGATTCTGGCACCCTGAATTAACTCAAGTTG
AAAGACAGTCTTTGAATCTCTTGTTCGCTCTGATTGACAATCCCGACTCC
CCTGCGACCCAGAAAGCAGAAGCCCAACTACGTGAGGAAAGCATGAGAGG
GAAAGTGAAAAACAGGAACTCGCGACCTTCCGGACGGGGGTTTGCAAGGT
AA
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