Gchil6720.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6720.t1
Unique Name	Gchil6720.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	284

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004416_pilon	contig	tig00004416_pilon:532019..532870 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMQ214CT
PFAMs	Asp_Arg_Hydrox
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K00476
Evalue	8.51e-78
EggNOG OGs	COG3555@1\|root,KOG3696@2759\|Eukaryota
EC	1.14.11.16
Description	peptide-aspartate beta-dioxygenase activity
COG category	O
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6720	Gchil6720	Gracilaria chilensis NLEC103_M9 male	gene	tig00004416_pilon 532019..532870 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6720.t1.start1	Gchil6720.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004416_pilon 532019..532021 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6720.t1.CDS1	Gchil6720.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004416_pilon 532019..532870 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6720.t1.exon1	Gchil6720.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004416_pilon 532019..532870 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6720.t1.stop1	Gchil6720.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004416_pilon 532868..532870 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6720.t1	Gchil6720.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004416_pilon 532019..532870 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004416_pilon:532019..532870+
coding sequence from alignment at tig00004416_pilon:532019..532870+

mRNA sequence

>Gchil6720.t1 ID=Gchil6720.t1|Name=Gchil6720.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=284bp
MENEFVGKDISRVLKSFDDVLSGTNLEFGYGTPRHQKATSFIEGLDAKPF
YDDFTSDESSLKWVGHLEQNWETIAHELRTVSSEKDIESRGNNIWVPPVV
EAATTYGPDWRTLVLQDRVWDPINSKLFPKTVKILRDEKAKIPSVEAFFA
KQAPKTGIKLHTDFCNFLLTMHLGLDTPERKSWIEVGGERRYWQNGKALV
FNTSFFHETMNESDDQERRVLLIRFWHPELTQVERQSLNLLFALIDNPDS
PATQKAEAQLREESMRGKVKNRNSRPSGRGFAR*

spliced messenger RNA

>Gchil6720.t1 ID=Gchil6720.t1|Name=Gchil6720.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00004416_pilon:532019..532870+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAACGAGTTTGTGGGGAAAGACATTTCCCGCGTGTTGAAGTCCTT
CGACGACGTTTTGAGTGGCACAAATTTGGAATTCGGGTATGGAACTCCTC
GTCACCAAAAGGCTACAAGTTTCATCGAAGGGCTTGATGCTAAACCTTTC
TACGACGATTTCACATCCGACGAATCCAGCTTGAAATGGGTGGGGCACCT
TGAGCAGAACTGGGAAACCATTGCCCATGAGCTGAGAACTGTATCTTCAG
AAAAAGATATTGAAAGTCGTGGTAACAATATTTGGGTCCCTCCTGTCGTT
GAGGCCGCCACCACATACGGACCAGACTGGCGAACTCTGGTTCTACAAGA
TAGAGTCTGGGACCCGATAAACTCGAAGTTATTCCCGAAAACAGTGAAGA
TCTTGCGCGACGAAAAAGCAAAAATACCTTCTGTAGAGGCATTTTTCGCC
AAACAAGCACCAAAGACAGGTATAAAACTCCACACAGATTTCTGTAACTT
CCTTCTTACGATGCATCTTGGGCTCGATACGCCAGAAAGAAAATCTTGGA
TCGAAGTTGGAGGTGAAAGAAGATACTGGCAAAACGGAAAGGCTTTGGTT
TTCAACACTAGTTTCTTCCACGAAACAATGAACGAATCCGATGACCAGGA
ACGGCGAGTGCTCCTCATTCGATTCTGGCACCCTGAATTAACTCAAGTTG
AAAGACAGTCTTTGAATCTCTTGTTCGCTCTGATTGACAATCCCGACTCC
CCTGCGACCCAGAAAGCAGAAGCCCAACTACGTGAGGAAAGCATGAGAGG
GAAAGTGAAAAACAGGAACTCGCGACCTTCCGGACGGGGGTTTGCAAGGT
AA

protein sequence of Gchil6720.t1

>Gchil6720.t1 ID=Gchil6720.t1|Name=Gchil6720.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=284bp
MENEFVGKDISRVLKSFDDVLSGTNLEFGYGTPRHQKATSFIEGLDAKPF
YDDFTSDESSLKWVGHLEQNWETIAHELRTVSSEKDIESRGNNIWVPPVV
EAATTYGPDWRTLVLQDRVWDPINSKLFPKTVKILRDEKAKIPSVEAFFA
KQAPKTGIKLHTDFCNFLLTMHLGLDTPERKSWIEVGGERRYWQNGKALV
FNTSFFHETMNESDDQERRVLLIRFWHPELTQVERQSLNLLFALIDNPDS
PATQKAEAQLREESMRGKVKNRNSRPSGRGFAR*

mRNA from alignment at tig00004416_pilon:532019..532870+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6720.t1 ID=Gchil6720.t1|Name=Gchil6720.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00004416_pilon:532019..532870+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAACGAGTTTGTGGGGAAAGACATTTCCCGCGTGTTGAAGTCCTT
CGACGACGTTTTGAGTGGCACAAATTTGGAATTCGGGTATGGAACTCCTC
GTCACCAAAAGGCTACAAGTTTCATCGAAGGGCTTGATGCTAAACCTTTC
TACGACGATTTCACATCCGACGAATCCAGCTTGAAATGGGTGGGGCACCT
TGAGCAGAACTGGGAAACCATTGCCCATGAGCTGAGAACTGTATCTTCAG
AAAAAGATATTGAAAGTCGTGGTAACAATATTTGGGTCCCTCCTGTCGTT
GAGGCCGCCACCACATACGGACCAGACTGGCGAACTCTGGTTCTACAAGA
TAGAGTCTGGGACCCGATAAACTCGAAGTTATTCCCGAAAACAGTGAAGA
TCTTGCGCGACGAAAAAGCAAAAATACCTTCTGTAGAGGCATTTTTCGCC
AAACAAGCACCAAAGACAGGTATAAAACTCCACACAGATTTCTGTAACTT
CCTTCTTACGATGCATCTTGGGCTCGATACGCCAGAAAGAAAATCTTGGA
TCGAAGTTGGAGGTGAAAGAAGATACTGGCAAAACGGAAAGGCTTTGGTT
TTCAACACTAGTTTCTTCCACGAAACAATGAACGAATCCGATGACCAGGA
ACGGCGAGTGCTCCTCATTCGATTCTGGCACCCTGAATTAACTCAAGTTG
AAAGACAGTCTTTGAATCTCTTGTTCGCTCTGATTGACAATCCCGACTCC
CCTGCGACCCAGAAAGCAGAAGCCCAACTACGTGAGGAAAGCATGAGAGG
GAAAGTGAAAAACAGGAACTCGCGACCTTCCGGACGGGGGTTTGCAAGGT
AA

Coding sequence (CDS) from alignment at tig00004416_pilon:532019..532870+

>Gchil6720.t1 ID=Gchil6720.t1|Name=Gchil6720.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=852bp|location=Sequence derived from alignment at tig00004416_pilon:532019..532870+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAACGAGTTTGTGGGGAAAGACATTTCCCGCGTGTTGAAGTCCTT
CGACGACGTTTTGAGTGGCACAAATTTGGAATTCGGGTATGGAACTCCTC
GTCACCAAAAGGCTACAAGTTTCATCGAAGGGCTTGATGCTAAACCTTTC
TACGACGATTTCACATCCGACGAATCCAGCTTGAAATGGGTGGGGCACCT
TGAGCAGAACTGGGAAACCATTGCCCATGAGCTGAGAACTGTATCTTCAG
AAAAAGATATTGAAAGTCGTGGTAACAATATTTGGGTCCCTCCTGTCGTT
GAGGCCGCCACCACATACGGACCAGACTGGCGAACTCTGGTTCTACAAGA
TAGAGTCTGGGACCCGATAAACTCGAAGTTATTCCCGAAAACAGTGAAGA
TCTTGCGCGACGAAAAAGCAAAAATACCTTCTGTAGAGGCATTTTTCGCC
AAACAAGCACCAAAGACAGGTATAAAACTCCACACAGATTTCTGTAACTT
CCTTCTTACGATGCATCTTGGGCTCGATACGCCAGAAAGAAAATCTTGGA
TCGAAGTTGGAGGTGAAAGAAGATACTGGCAAAACGGAAAGGCTTTGGTT
TTCAACACTAGTTTCTTCCACGAAACAATGAACGAATCCGATGACCAGGA
ACGGCGAGTGCTCCTCATTCGATTCTGGCACCCTGAATTAACTCAAGTTG
AAAGACAGTCTTTGAATCTCTTGTTCGCTCTGATTGACAATCCCGACTCC
CCTGCGACCCAGAAAGCAGAAGCCCAACTACGTGAGGAAAGCATGAGAGG
GAAAGTGAAAAACAGGAACTCGCGACCTTCCGGACGGGGGTTTGCAAGGT
AA