Gchil6686.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6686.t1
Unique NameGchil6686.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length845
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:215014..217548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6686Gchil6686Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 215014..217548 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6686.t1.stop1Gchil6686.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 215014..215016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6686.t1.CDS1Gchil6686.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 215014..217548 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6686.t1.exon1Gchil6686.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 215014..217548 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6686.t1.start1Gchil6686.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 217546..217548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6686.t1Gchil6686.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 215014..217548 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6686.t1 ID=Gchil6686.t1|Name=Gchil6686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=845bp
MASSSDSPDVIFREKAAPTPTFEGVPIPAALQELRAAENQSASSKPSEMT
ALANKLRMFHIDSPPDSSDFAKVAAAKRKEIIESQRHETLGDKENFYAET
QKEGHILKGINLFHSPTAAGDGTGTLSLRGNKQESSEYGSEFKLQEDSSS
TDLLPTPEDVSAKRSFVAAESAHTPSMNNSHGSKESHCRERTDSGRRTDA
LVEKNGHNCRTEGHGVFESANFESDLRKILEGKDKWSWPNRKDALLTLSK
AVNVHPKEADQVLRECISKFSTTMNDHLEELRPTVITSALGLIDAIVVKR
LGTASEFSKEVFPSVMDVACGRSLTAESAARTLVHMLNYDKRLATNLRDA
DNSERLMQLVNQLIESRDNITSQNASVAMEHLRKELPNALPSPARPISAP
DTTPAGTNARADGTSGSMPSFGQGNLSARSTPNLGRRLASLRSKNLRTPS
SKVPLETSGQIASLRGNNTDFSSKIGEPSTLDFRSGSHVLKNMKLGDSVR
KASPQSTRSGRVYSEEEVESIRRHSVRIAVEKFKTSHAKELQKRAREMDD
MRQKLQREHAEVEDLRAVLEEFELTMKKMVSEGNSKANAQQIILETEKSK
LKAELIERSDAFEKLKEKYENAKEAIVVYENKESRFVDQIKELKRNMVEL
QKWSNDLKANSEKKLSKAFESVTAYRASYIDKEAHANKALSDLKRTSAEL
EKAQQSHAETAAKFATVESDMHKEQDARASAEAALATAKSSLTRVTNQKD
QFQAELTKAEEELNHLRTQVAGLKEKAQQLSDVEKRLETLTIERQSLKAR
AYDDMMRMRELEDQLDAKCRECDELNQICEEVMSQLEHSRTDGS*
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spliced messenger RNA

>Gchil6686.t1 ID=Gchil6686.t1|Name=Gchil6686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2535bp|location=Sequence derived from alignment at tig00004416_pilon:215014..217548- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCATCGTCCGATTCACCGGATGTAATATTCCGGGAAAAGGCGGC
ACCCACTCCGACTTTTGAGGGCGTCCCTATTCCTGCCGCCCTCCAAGAAC
TTCGCGCCGCTGAGAACCAAAGTGCATCATCGAAGCCATCGGAAATGACT
GCTCTAGCAAACAAACTTCGAATGTTTCACATCGATTCACCACCAGACTC
TTCAGATTTTGCGAAGGTGGCCGCAGCAAAACGAAAGGAAATTATCGAAT
CACAACGTCATGAAACTCTGGGGGACAAAGAGAATTTCTACGCTGAAACC
CAGAAGGAGGGTCACATTCTAAAGGGAATCAACTTGTTCCATTCCCCGAC
GGCTGCGGGCGACGGAACCGGAACGCTGTCCTTGAGAGGAAACAAACAAG
AGAGTTCTGAGTATGGTTCAGAGTTCAAACTGCAAGAAGACAGCAGCTCC
ACAGACTTGTTGCCGACTCCAGAAGATGTTTCAGCAAAGCGTTCCTTTGT
CGCGGCCGAATCAGCGCACACCCCTTCAATGAATAACAGTCATGGGTCAA
AAGAAAGCCACTGCAGAGAAAGAACGGACAGCGGGAGAAGGACAGATGCT
TTGGTTGAGAAAAATGGCCACAATTGCCGAACCGAAGGGCACGGAGTTTT
CGAGAGCGCTAATTTTGAAAGTGACCTACGCAAAATTCTTGAAGGTAAAG
ACAAGTGGTCATGGCCGAACCGGAAGGATGCCCTCTTGACACTTTCGAAA
GCCGTGAATGTCCATCCAAAGGAAGCCGATCAAGTCTTGAGAGAATGCAT
TTCAAAGTTTTCGACGACAATGAATGACCATCTTGAAGAACTTCGCCCGA
CAGTTATCACTTCTGCTCTTGGTCTGATTGATGCGATCGTTGTCAAAAGA
CTTGGAACTGCGAGCGAATTCTCCAAAGAAGTGTTTCCGAGCGTTATGGA
TGTCGCATGTGGACGTTCGTTAACGGCAGAAAGTGCTGCACGAACTTTGG
TTCACATGTTGAACTATGACAAACGCCTAGCAACTAATCTGCGAGATGCA
GACAACTCAGAACGTCTCATGCAACTAGTCAACCAATTGATAGAGTCGAG
GGATAACATTACAAGTCAGAACGCCTCAGTTGCAATGGAGCACCTTCGAA
AGGAACTTCCAAACGCACTTCCGAGCCCAGCCCGACCAATTTCGGCGCCA
GATACCACCCCAGCCGGCACGAACGCTCGCGCTGATGGAACTTCTGGAAG
CATGCCCTCCTTCGGACAGGGAAACCTGTCCGCAAGGTCGACTCCGAACC
TGGGAAGGAGACTAGCTTCATTGCGCTCAAAGAATTTAAGAACGCCTTCC
TCAAAAGTCCCACTGGAGACTAGCGGGCAGATAGCCTCCCTTCGAGGAAA
CAACACCGATTTTTCTTCAAAGATAGGCGAACCCTCTACCTTGGATTTCC
GGTCGGGGTCTCACGTTTTGAAGAATATGAAGCTTGGCGACTCTGTCAGA
AAGGCCAGTCCTCAGTCAACACGAAGCGGTCGGGTCTACTCTGAAGAAGA
AGTTGAGAGTATACGAAGGCATTCTGTTAGGATTGCCGTAGAGAAATTCA
AGACGTCGCATGCTAAAGAACTTCAAAAGCGCGCTAGAGAAATGGACGAT
ATGCGCCAGAAACTTCAGAGAGAACATGCAGAGGTGGAAGACTTAAGGGC
GGTTCTGGAGGAGTTTGAACTTACCATGAAGAAAATGGTCTCCGAGGGTA
ATTCTAAAGCAAACGCCCAACAAATAATCCTGGAAACGGAAAAGAGCAAG
CTTAAAGCCGAACTAATAGAAAGATCTGACGCCTTTGAGAAACTGAAGGA
GAAATATGAAAACGCGAAAGAAGCAATCGTTGTGTACGAGAACAAAGAAA
GTCGCTTCGTCGATCAAATCAAAGAGTTGAAAAGAAACATGGTGGAGCTG
CAGAAGTGGAGCAACGACTTAAAGGCAAACTCTGAGAAGAAGCTTTCGAA
AGCATTCGAGAGTGTCACCGCGTATCGTGCATCTTACATTGACAAAGAAG
CACATGCCAATAAGGCTTTGAGCGACCTTAAGCGTACGAGTGCGGAACTT
GAGAAGGCTCAGCAAAGTCATGCTGAAACTGCGGCCAAGTTCGCAACTGT
AGAGTCAGATATGCACAAAGAACAAGATGCACGAGCCTCTGCCGAGGCCG
CCCTAGCGACAGCGAAAAGTTCTTTGACTCGGGTAACCAACCAAAAAGAT
CAATTTCAAGCCGAACTTACGAAAGCAGAAGAAGAATTAAATCACCTGAG
AACCCAAGTCGCGGGACTCAAGGAAAAGGCTCAGCAACTATCAGATGTGG
AGAAGAGACTTGAAACGCTTACAATAGAGAGGCAATCCTTGAAAGCAAGA
GCTTACGATGACATGATGCGAATGAGAGAACTAGAGGACCAGTTAGACGC
AAAATGCAGAGAATGTGATGAACTGAATCAGATTTGCGAAGAAGTCATGT
CCCAACTAGAGCACAGTAGAACAGACGGAAGCTGA
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protein sequence of Gchil6686.t1

>Gchil6686.t1 ID=Gchil6686.t1|Name=Gchil6686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=845bp
MASSSDSPDVIFREKAAPTPTFEGVPIPAALQELRAAENQSASSKPSEMT
ALANKLRMFHIDSPPDSSDFAKVAAAKRKEIIESQRHETLGDKENFYAET
QKEGHILKGINLFHSPTAAGDGTGTLSLRGNKQESSEYGSEFKLQEDSSS
TDLLPTPEDVSAKRSFVAAESAHTPSMNNSHGSKESHCRERTDSGRRTDA
LVEKNGHNCRTEGHGVFESANFESDLRKILEGKDKWSWPNRKDALLTLSK
AVNVHPKEADQVLRECISKFSTTMNDHLEELRPTVITSALGLIDAIVVKR
LGTASEFSKEVFPSVMDVACGRSLTAESAARTLVHMLNYDKRLATNLRDA
DNSERLMQLVNQLIESRDNITSQNASVAMEHLRKELPNALPSPARPISAP
DTTPAGTNARADGTSGSMPSFGQGNLSARSTPNLGRRLASLRSKNLRTPS
SKVPLETSGQIASLRGNNTDFSSKIGEPSTLDFRSGSHVLKNMKLGDSVR
KASPQSTRSGRVYSEEEVESIRRHSVRIAVEKFKTSHAKELQKRAREMDD
MRQKLQREHAEVEDLRAVLEEFELTMKKMVSEGNSKANAQQIILETEKSK
LKAELIERSDAFEKLKEKYENAKEAIVVYENKESRFVDQIKELKRNMVEL
QKWSNDLKANSEKKLSKAFESVTAYRASYIDKEAHANKALSDLKRTSAEL
EKAQQSHAETAAKFATVESDMHKEQDARASAEAALATAKSSLTRVTNQKD
QFQAELTKAEEELNHLRTQVAGLKEKAQQLSDVEKRLETLTIERQSLKAR
AYDDMMRMRELEDQLDAKCRECDELNQICEEVMSQLEHSRTDGS*
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mRNA from alignment at tig00004416_pilon:215014..217548-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6686.t1 ID=Gchil6686.t1|Name=Gchil6686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2535bp|location=Sequence derived from alignment at tig00004416_pilon:215014..217548- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTCATCGTCCGATTCACCGGATGTAATATTCCGGGAAAAGGCGGC
ACCCACTCCGACTTTTGAGGGCGTCCCTATTCCTGCCGCCCTCCAAGAAC
TTCGCGCCGCTGAGAACCAAAGTGCATCATCGAAGCCATCGGAAATGACT
GCTCTAGCAAACAAACTTCGAATGTTTCACATCGATTCACCACCAGACTC
TTCAGATTTTGCGAAGGTGGCCGCAGCAAAACGAAAGGAAATTATCGAAT
CACAACGTCATGAAACTCTGGGGGACAAAGAGAATTTCTACGCTGAAACC
CAGAAGGAGGGTCACATTCTAAAGGGAATCAACTTGTTCCATTCCCCGAC
GGCTGCGGGCGACGGAACCGGAACGCTGTCCTTGAGAGGAAACAAACAAG
AGAGTTCTGAGTATGGTTCAGAGTTCAAACTGCAAGAAGACAGCAGCTCC
ACAGACTTGTTGCCGACTCCAGAAGATGTTTCAGCAAAGCGTTCCTTTGT
CGCGGCCGAATCAGCGCACACCCCTTCAATGAATAACAGTCATGGGTCAA
AAGAAAGCCACTGCAGAGAAAGAACGGACAGCGGGAGAAGGACAGATGCT
TTGGTTGAGAAAAATGGCCACAATTGCCGAACCGAAGGGCACGGAGTTTT
CGAGAGCGCTAATTTTGAAAGTGACCTACGCAAAATTCTTGAAGGTAAAG
ACAAGTGGTCATGGCCGAACCGGAAGGATGCCCTCTTGACACTTTCGAAA
GCCGTGAATGTCCATCCAAAGGAAGCCGATCAAGTCTTGAGAGAATGCAT
TTCAAAGTTTTCGACGACAATGAATGACCATCTTGAAGAACTTCGCCCGA
CAGTTATCACTTCTGCTCTTGGTCTGATTGATGCGATCGTTGTCAAAAGA
CTTGGAACTGCGAGCGAATTCTCCAAAGAAGTGTTTCCGAGCGTTATGGA
TGTCGCATGTGGACGTTCGTTAACGGCAGAAAGTGCTGCACGAACTTTGG
TTCACATGTTGAACTATGACAAACGCCTAGCAACTAATCTGCGAGATGCA
GACAACTCAGAACGTCTCATGCAACTAGTCAACCAATTGATAGAGTCGAG
GGATAACATTACAAGTCAGAACGCCTCAGTTGCAATGGAGCACCTTCGAA
AGGAACTTCCAAACGCACTTCCGAGCCCAGCCCGACCAATTTCGGCGCCA
GATACCACCCCAGCCGGCACGAACGCTCGCGCTGATGGAACTTCTGGAAG
CATGCCCTCCTTCGGACAGGGAAACCTGTCCGCAAGGTCGACTCCGAACC
TGGGAAGGAGACTAGCTTCATTGCGCTCAAAGAATTTAAGAACGCCTTCC
TCAAAAGTCCCACTGGAGACTAGCGGGCAGATAGCCTCCCTTCGAGGAAA
CAACACCGATTTTTCTTCAAAGATAGGCGAACCCTCTACCTTGGATTTCC
GGTCGGGGTCTCACGTTTTGAAGAATATGAAGCTTGGCGACTCTGTCAGA
AAGGCCAGTCCTCAGTCAACACGAAGCGGTCGGGTCTACTCTGAAGAAGA
AGTTGAGAGTATACGAAGGCATTCTGTTAGGATTGCCGTAGAGAAATTCA
AGACGTCGCATGCTAAAGAACTTCAAAAGCGCGCTAGAGAAATGGACGAT
ATGCGCCAGAAACTTCAGAGAGAACATGCAGAGGTGGAAGACTTAAGGGC
GGTTCTGGAGGAGTTTGAACTTACCATGAAGAAAATGGTCTCCGAGGGTA
ATTCTAAAGCAAACGCCCAACAAATAATCCTGGAAACGGAAAAGAGCAAG
CTTAAAGCCGAACTAATAGAAAGATCTGACGCCTTTGAGAAACTGAAGGA
GAAATATGAAAACGCGAAAGAAGCAATCGTTGTGTACGAGAACAAAGAAA
GTCGCTTCGTCGATCAAATCAAAGAGTTGAAAAGAAACATGGTGGAGCTG
CAGAAGTGGAGCAACGACTTAAAGGCAAACTCTGAGAAGAAGCTTTCGAA
AGCATTCGAGAGTGTCACCGCGTATCGTGCATCTTACATTGACAAAGAAG
CACATGCCAATAAGGCTTTGAGCGACCTTAAGCGTACGAGTGCGGAACTT
GAGAAGGCTCAGCAAAGTCATGCTGAAACTGCGGCCAAGTTCGCAACTGT
AGAGTCAGATATGCACAAAGAACAAGATGCACGAGCCTCTGCCGAGGCCG
CCCTAGCGACAGCGAAAAGTTCTTTGACTCGGGTAACCAACCAAAAAGAT
CAATTTCAAGCCGAACTTACGAAAGCAGAAGAAGAATTAAATCACCTGAG
AACCCAAGTCGCGGGACTCAAGGAAAAGGCTCAGCAACTATCAGATGTGG
AGAAGAGACTTGAAACGCTTACAATAGAGAGGCAATCCTTGAAAGCAAGA
GCTTACGATGACATGATGCGAATGAGAGAACTAGAGGACCAGTTAGACGC
AAAATGCAGAGAATGTGATGAACTGAATCAGATTTGCGAAGAAGTCATGT
CCCAACTAGAGCACAGTAGAACAGACGGAAGCTGA
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Coding sequence (CDS) from alignment at tig00004416_pilon:215014..217548-

>Gchil6686.t1 ID=Gchil6686.t1|Name=Gchil6686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2535bp|location=Sequence derived from alignment at tig00004416_pilon:215014..217548- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTCATCGTCCGATTCACCGGATGTAATATTCCGGGAAAAGGCGGC
ACCCACTCCGACTTTTGAGGGCGTCCCTATTCCTGCCGCCCTCCAAGAAC
TTCGCGCCGCTGAGAACCAAAGTGCATCATCGAAGCCATCGGAAATGACT
GCTCTAGCAAACAAACTTCGAATGTTTCACATCGATTCACCACCAGACTC
TTCAGATTTTGCGAAGGTGGCCGCAGCAAAACGAAAGGAAATTATCGAAT
CACAACGTCATGAAACTCTGGGGGACAAAGAGAATTTCTACGCTGAAACC
CAGAAGGAGGGTCACATTCTAAAGGGAATCAACTTGTTCCATTCCCCGAC
GGCTGCGGGCGACGGAACCGGAACGCTGTCCTTGAGAGGAAACAAACAAG
AGAGTTCTGAGTATGGTTCAGAGTTCAAACTGCAAGAAGACAGCAGCTCC
ACAGACTTGTTGCCGACTCCAGAAGATGTTTCAGCAAAGCGTTCCTTTGT
CGCGGCCGAATCAGCGCACACCCCTTCAATGAATAACAGTCATGGGTCAA
AAGAAAGCCACTGCAGAGAAAGAACGGACAGCGGGAGAAGGACAGATGCT
TTGGTTGAGAAAAATGGCCACAATTGCCGAACCGAAGGGCACGGAGTTTT
CGAGAGCGCTAATTTTGAAAGTGACCTACGCAAAATTCTTGAAGGTAAAG
ACAAGTGGTCATGGCCGAACCGGAAGGATGCCCTCTTGACACTTTCGAAA
GCCGTGAATGTCCATCCAAAGGAAGCCGATCAAGTCTTGAGAGAATGCAT
TTCAAAGTTTTCGACGACAATGAATGACCATCTTGAAGAACTTCGCCCGA
CAGTTATCACTTCTGCTCTTGGTCTGATTGATGCGATCGTTGTCAAAAGA
CTTGGAACTGCGAGCGAATTCTCCAAAGAAGTGTTTCCGAGCGTTATGGA
TGTCGCATGTGGACGTTCGTTAACGGCAGAAAGTGCTGCACGAACTTTGG
TTCACATGTTGAACTATGACAAACGCCTAGCAACTAATCTGCGAGATGCA
GACAACTCAGAACGTCTCATGCAACTAGTCAACCAATTGATAGAGTCGAG
GGATAACATTACAAGTCAGAACGCCTCAGTTGCAATGGAGCACCTTCGAA
AGGAACTTCCAAACGCACTTCCGAGCCCAGCCCGACCAATTTCGGCGCCA
GATACCACCCCAGCCGGCACGAACGCTCGCGCTGATGGAACTTCTGGAAG
CATGCCCTCCTTCGGACAGGGAAACCTGTCCGCAAGGTCGACTCCGAACC
TGGGAAGGAGACTAGCTTCATTGCGCTCAAAGAATTTAAGAACGCCTTCC
TCAAAAGTCCCACTGGAGACTAGCGGGCAGATAGCCTCCCTTCGAGGAAA
CAACACCGATTTTTCTTCAAAGATAGGCGAACCCTCTACCTTGGATTTCC
GGTCGGGGTCTCACGTTTTGAAGAATATGAAGCTTGGCGACTCTGTCAGA
AAGGCCAGTCCTCAGTCAACACGAAGCGGTCGGGTCTACTCTGAAGAAGA
AGTTGAGAGTATACGAAGGCATTCTGTTAGGATTGCCGTAGAGAAATTCA
AGACGTCGCATGCTAAAGAACTTCAAAAGCGCGCTAGAGAAATGGACGAT
ATGCGCCAGAAACTTCAGAGAGAACATGCAGAGGTGGAAGACTTAAGGGC
GGTTCTGGAGGAGTTTGAACTTACCATGAAGAAAATGGTCTCCGAGGGTA
ATTCTAAAGCAAACGCCCAACAAATAATCCTGGAAACGGAAAAGAGCAAG
CTTAAAGCCGAACTAATAGAAAGATCTGACGCCTTTGAGAAACTGAAGGA
GAAATATGAAAACGCGAAAGAAGCAATCGTTGTGTACGAGAACAAAGAAA
GTCGCTTCGTCGATCAAATCAAAGAGTTGAAAAGAAACATGGTGGAGCTG
CAGAAGTGGAGCAACGACTTAAAGGCAAACTCTGAGAAGAAGCTTTCGAA
AGCATTCGAGAGTGTCACCGCGTATCGTGCATCTTACATTGACAAAGAAG
CACATGCCAATAAGGCTTTGAGCGACCTTAAGCGTACGAGTGCGGAACTT
GAGAAGGCTCAGCAAAGTCATGCTGAAACTGCGGCCAAGTTCGCAACTGT
AGAGTCAGATATGCACAAAGAACAAGATGCACGAGCCTCTGCCGAGGCCG
CCCTAGCGACAGCGAAAAGTTCTTTGACTCGGGTAACCAACCAAAAAGAT
CAATTTCAAGCCGAACTTACGAAAGCAGAAGAAGAATTAAATCACCTGAG
AACCCAAGTCGCGGGACTCAAGGAAAAGGCTCAGCAACTATCAGATGTGG
AGAAGAGACTTGAAACGCTTACAATAGAGAGGCAATCCTTGAAAGCAAGA
GCTTACGATGACATGATGCGAATGAGAGAACTAGAGGACCAGTTAGACGC
AAAATGCAGAGAATGTGATGAACTGAATCAGATTTGCGAAGAAGTCATGT
CCCAACTAGAGCACAGTAGAACAGACGGAAGCTGA
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