Gchil1402.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1402.t1
Unique Name	Gchil1402.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	483

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004414_pilon	contig	tig00004414_pilon:612616..614064 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	179408.Osc7112_0997
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00467
KEGG ko	ko:K01183
KEGG Reaction	R01206,R02334
KEGG Pathway	ko00520,ko01100,map00520,map01100
Evalue	6.58e-138
EggNOG OGs	COG3325@1\|root,COG3325@2\|Bacteria,1G9CY@1117\|Cyanobacteria,1HGG3@1150\|Oscillatoriales
EC	3.2.1.14
Description	Belongs to the glycosyl hydrolase 18 family
COG category	G
CAZy	GH18
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1402	Gchil1402	Gracilaria chilensis NLEC103_M9 male	gene	tig00004414_pilon 612616..614064 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1402.t1.start1	Gchil1402.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004414_pilon 612616..612618 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1402.t1.CDS1	Gchil1402.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004414_pilon 612616..614064 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1402.t1.exon1	Gchil1402.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004414_pilon 612616..614064 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1402.t1.stop1	Gchil1402.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004414_pilon 614062..614064 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1402.t1	Gchil1402.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004414_pilon 612616..614064 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004414_pilon:612616..614064+
coding sequence from alignment at tig00004414_pilon:612616..614064+

mRNA sequence

>Gchil1402.t1 ID=Gchil1402.t1|Name=Gchil1402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=483bp
MTSIDPGFEGREGHSALYADLEDWVEGTIAQTGDMCKHNGIVYKAAFYSD
TEPGHGDPTVNGWRMYDEMYDITSTTPQPDMKVIGYLPTWHEGFAYDNPD
LYSFVTHVIISFLMFEEDGSFSQTSIDEVKALLLTVENTIDGFDKKPKIM
VACGGATDENFYNILKAVSDDESSPLLTTVLNSITEFVTSNRLDGVDLDL
ECWWFDEAPPESTFPREAGKGLTTLISALKNQSICPDMDGKIVSTAVFGT
SWYGREYSGMQEADWISVMSYDFTGSWNSSPVGPHSATYKIKNMRDFLCE
QQGPWPSQSEFGKSMEDSVKNMADNPINTVEDSVWYWTSPSYSDWTGPGQ
ARARAQMCFGIPTYGYDFAYKKDVDEQSGEVPPGYRIVRNSEMAAIFPDA
FKSSYGNYKELGGTPRPDFVGNSETLYKYKHNIHFSTPETALTTARFLSK
IGCQGMIFWDLVQECWDDDKSVLKAVYKNFTK*

spliced messenger RNA

>Gchil1402.t1 ID=Gchil1402.t1|Name=Gchil1402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00004414_pilon:612616..614064+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCAATTGATCCCGGCTTCGAAGGGCGGGAAGGTCACTCGGCATT
GTACGCAGATTTAGAAGACTGGGTAGAAGGTACAATAGCTCAGACGGGAG
ATATGTGCAAGCACAATGGAATAGTCTACAAAGCTGCATTTTATAGCGAT
ACCGAACCAGGTCATGGAGATCCAACTGTGAATGGATGGCGTATGTACGA
TGAGATGTACGACATCACATCCACAACCCCGCAACCGGATATGAAAGTCA
TCGGATACCTTCCAACCTGGCATGAAGGCTTTGCTTACGACAATCCCGAT
TTGTACTCTTTTGTAACGCACGTTATCATTTCATTTCTCATGTTCGAAGA
AGACGGTAGTTTTTCGCAGACATCGATCGACGAAGTGAAAGCACTTCTTT
TGACCGTTGAGAACACGATTGATGGATTTGATAAGAAACCAAAAATTATG
GTCGCTTGTGGTGGTGCTACCGACGAAAACTTTTACAACATTTTGAAGGC
GGTTTCCGATGACGAATCTTCTCCGCTTTTGACAACTGTATTGAACAGTA
TTACCGAGTTTGTCACGTCAAATAGACTGGATGGAGTGGATCTAGATTTA
GAATGCTGGTGGTTCGATGAAGCGCCACCGGAGAGTACATTCCCTCGAGA
GGCCGGAAAAGGATTGACAACATTGATATCTGCCCTGAAAAACCAATCAA
TCTGCCCAGACATGGATGGTAAAATAGTTTCAACTGCCGTTTTCGGTACT
TCGTGGTATGGGAGAGAATATTCAGGTATGCAAGAGGCTGATTGGATATC
TGTTATGTCGTATGACTTTACAGGGTCTTGGAACTCATCTCCAGTAGGGC
CTCATTCCGCTACATACAAGATCAAGAATATGAGGGATTTCCTTTGTGAG
CAGCAAGGTCCCTGGCCTTCTCAATCAGAGTTCGGAAAATCTATGGAGGA
CAGTGTGAAGAATATGGCCGATAATCCTATTAATACTGTTGAGGACTCAG
TTTGGTATTGGACCAGTCCTTCCTATTCTGACTGGACTGGACCCGGTCAA
GCCAGAGCTCGCGCGCAAATGTGCTTTGGAATTCCGACATATGGATACGA
TTTCGCATACAAGAAAGATGTTGATGAGCAGAGTGGAGAAGTCCCTCCTG
GATACCGCATCGTGAGGAATTCCGAAATGGCTGCAATATTCCCTGATGCG
TTCAAATCGTCATATGGCAATTACAAAGAGCTGGGCGGAACGCCACGACC
TGACTTTGTTGGCAATAGTGAAACTCTTTACAAGTACAAACATAACATCC
ACTTCTCGACGCCTGAAACGGCTTTGACGACGGCCCGTTTTCTTTCCAAA
ATTGGCTGCCAGGGCATGATTTTCTGGGATCTAGTTCAGGAATGTTGGGA
CGATGACAAGAGCGTGTTGAAGGCAGTGTACAAGAACTTCACGAAGTAG

protein sequence of Gchil1402.t1

>Gchil1402.t1 ID=Gchil1402.t1|Name=Gchil1402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=483bp
MTSIDPGFEGREGHSALYADLEDWVEGTIAQTGDMCKHNGIVYKAAFYSD
TEPGHGDPTVNGWRMYDEMYDITSTTPQPDMKVIGYLPTWHEGFAYDNPD
LYSFVTHVIISFLMFEEDGSFSQTSIDEVKALLLTVENTIDGFDKKPKIM
VACGGATDENFYNILKAVSDDESSPLLTTVLNSITEFVTSNRLDGVDLDL
ECWWFDEAPPESTFPREAGKGLTTLISALKNQSICPDMDGKIVSTAVFGT
SWYGREYSGMQEADWISVMSYDFTGSWNSSPVGPHSATYKIKNMRDFLCE
QQGPWPSQSEFGKSMEDSVKNMADNPINTVEDSVWYWTSPSYSDWTGPGQ
ARARAQMCFGIPTYGYDFAYKKDVDEQSGEVPPGYRIVRNSEMAAIFPDA
FKSSYGNYKELGGTPRPDFVGNSETLYKYKHNIHFSTPETALTTARFLSK
IGCQGMIFWDLVQECWDDDKSVLKAVYKNFTK*

mRNA from alignment at tig00004414_pilon:612616..614064+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1402.t1 ID=Gchil1402.t1|Name=Gchil1402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00004414_pilon:612616..614064+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTTCAATTGATCCCGGCTTCGAAGGGCGGGAAGGTCACTCGGCATT
GTACGCAGATTTAGAAGACTGGGTAGAAGGTACAATAGCTCAGACGGGAG
ATATGTGCAAGCACAATGGAATAGTCTACAAAGCTGCATTTTATAGCGAT
ACCGAACCAGGTCATGGAGATCCAACTGTGAATGGATGGCGTATGTACGA
TGAGATGTACGACATCACATCCACAACCCCGCAACCGGATATGAAAGTCA
TCGGATACCTTCCAACCTGGCATGAAGGCTTTGCTTACGACAATCCCGAT
TTGTACTCTTTTGTAACGCACGTTATCATTTCATTTCTCATGTTCGAAGA
AGACGGTAGTTTTTCGCAGACATCGATCGACGAAGTGAAAGCACTTCTTT
TGACCGTTGAGAACACGATTGATGGATTTGATAAGAAACCAAAAATTATG
GTCGCTTGTGGTGGTGCTACCGACGAAAACTTTTACAACATTTTGAAGGC
GGTTTCCGATGACGAATCTTCTCCGCTTTTGACAACTGTATTGAACAGTA
TTACCGAGTTTGTCACGTCAAATAGACTGGATGGAGTGGATCTAGATTTA
GAATGCTGGTGGTTCGATGAAGCGCCACCGGAGAGTACATTCCCTCGAGA
GGCCGGAAAAGGATTGACAACATTGATATCTGCCCTGAAAAACCAATCAA
TCTGCCCAGACATGGATGGTAAAATAGTTTCAACTGCCGTTTTCGGTACT
TCGTGGTATGGGAGAGAATATTCAGGTATGCAAGAGGCTGATTGGATATC
TGTTATGTCGTATGACTTTACAGGGTCTTGGAACTCATCTCCAGTAGGGC
CTCATTCCGCTACATACAAGATCAAGAATATGAGGGATTTCCTTTGTGAG
CAGCAAGGTCCCTGGCCTTCTCAATCAGAGTTCGGAAAATCTATGGAGGA
CAGTGTGAAGAATATGGCCGATAATCCTATTAATACTGTTGAGGACTCAG
TTTGGTATTGGACCAGTCCTTCCTATTCTGACTGGACTGGACCCGGTCAA
GCCAGAGCTCGCGCGCAAATGTGCTTTGGAATTCCGACATATGGATACGA
TTTCGCATACAAGAAAGATGTTGATGAGCAGAGTGGAGAAGTCCCTCCTG
GATACCGCATCGTGAGGAATTCCGAAATGGCTGCAATATTCCCTGATGCG
TTCAAATCGTCATATGGCAATTACAAAGAGCTGGGCGGAACGCCACGACC
TGACTTTGTTGGCAATAGTGAAACTCTTTACAAGTACAAACATAACATCC
ACTTCTCGACGCCTGAAACGGCTTTGACGACGGCCCGTTTTCTTTCCAAA
ATTGGCTGCCAGGGCATGATTTTCTGGGATCTAGTTCAGGAATGTTGGGA
CGATGACAAGAGCGTGTTGAAGGCAGTGTACAAGAACTTCACGAAGTAG

Coding sequence (CDS) from alignment at tig00004414_pilon:612616..614064+

>Gchil1402.t1 ID=Gchil1402.t1|Name=Gchil1402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1449bp|location=Sequence derived from alignment at tig00004414_pilon:612616..614064+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTTCAATTGATCCCGGCTTCGAAGGGCGGGAAGGTCACTCGGCATT
GTACGCAGATTTAGAAGACTGGGTAGAAGGTACAATAGCTCAGACGGGAG
ATATGTGCAAGCACAATGGAATAGTCTACAAAGCTGCATTTTATAGCGAT
ACCGAACCAGGTCATGGAGATCCAACTGTGAATGGATGGCGTATGTACGA
TGAGATGTACGACATCACATCCACAACCCCGCAACCGGATATGAAAGTCA
TCGGATACCTTCCAACCTGGCATGAAGGCTTTGCTTACGACAATCCCGAT
TTGTACTCTTTTGTAACGCACGTTATCATTTCATTTCTCATGTTCGAAGA
AGACGGTAGTTTTTCGCAGACATCGATCGACGAAGTGAAAGCACTTCTTT
TGACCGTTGAGAACACGATTGATGGATTTGATAAGAAACCAAAAATTATG
GTCGCTTGTGGTGGTGCTACCGACGAAAACTTTTACAACATTTTGAAGGC
GGTTTCCGATGACGAATCTTCTCCGCTTTTGACAACTGTATTGAACAGTA
TTACCGAGTTTGTCACGTCAAATAGACTGGATGGAGTGGATCTAGATTTA
GAATGCTGGTGGTTCGATGAAGCGCCACCGGAGAGTACATTCCCTCGAGA
GGCCGGAAAAGGATTGACAACATTGATATCTGCCCTGAAAAACCAATCAA
TCTGCCCAGACATGGATGGTAAAATAGTTTCAACTGCCGTTTTCGGTACT
TCGTGGTATGGGAGAGAATATTCAGGTATGCAAGAGGCTGATTGGATATC
TGTTATGTCGTATGACTTTACAGGGTCTTGGAACTCATCTCCAGTAGGGC
CTCATTCCGCTACATACAAGATCAAGAATATGAGGGATTTCCTTTGTGAG
CAGCAAGGTCCCTGGCCTTCTCAATCAGAGTTCGGAAAATCTATGGAGGA
CAGTGTGAAGAATATGGCCGATAATCCTATTAATACTGTTGAGGACTCAG
TTTGGTATTGGACCAGTCCTTCCTATTCTGACTGGACTGGACCCGGTCAA
GCCAGAGCTCGCGCGCAAATGTGCTTTGGAATTCCGACATATGGATACGA
TTTCGCATACAAGAAAGATGTTGATGAGCAGAGTGGAGAAGTCCCTCCTG
GATACCGCATCGTGAGGAATTCCGAAATGGCTGCAATATTCCCTGATGCG
TTCAAATCGTCATATGGCAATTACAAAGAGCTGGGCGGAACGCCACGACC
TGACTTTGTTGGCAATAGTGAAACTCTTTACAAGTACAAACATAACATCC
ACTTCTCGACGCCTGAAACGGCTTTGACGACGGCCCGTTTTCTTTCCAAA
ATTGGCTGCCAGGGCATGATTTTCTGGGATCTAGTTCAGGAATGTTGGGA
CGATGACAAGAGCGTGTTGAAGGCAGTGTACAAGAACTTCACGAAGTAG