Gchil1373.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1373.t1
Unique NameGchil1373.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length435
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:49785..51189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1373Gchil1373Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 49785..51189 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1373.t1Gchil1373.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 49785..51189 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1373.t1.stop1Gchil1373.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 49785..49787 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1373.t1.CDS1Gchil1373.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 49785..51010 -
Gchil1373.t1.CDS2Gchil1373.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 51111..51189 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1373.t1.exon1Gchil1373.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 49785..51010 -
Gchil1373.t1.exon2Gchil1373.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 51111..51189 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1373.t1.intron1Gchil1373.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004414_pilon 51011..51110 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1373.t1.start1Gchil1373.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 51187..51189 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1373.t1 ID=Gchil1373.t1|Name=Gchil1373.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=435bp
MHHRKTETIMESFAFLSETFLSKAETVYGTVHNYFQRLEYDDESLSVNVN
NETELPDDSLDPLKSEMNPSWGLRFVDRDDRFSDFIQHHTPDGSIYRGPP
ITGIHLTSVTAVEGDILDPECFHQRLRLPSEICQIHRFAASYYKSLYPFR
KLSPTPCNDLSTDHISTSFFSEKISMPVSFKANLYQACVLKFFEEYESGT
YLQIRRIPLASNNVHEESKQENIRVRQALLSLSTELAPVLIRTRVKKDAR
FSFRLNDRWNPYASSIDLASMYRDLYISSLDRRQERRIRRLVEIEILKTF
SKDQRTAQNREAPIPVEYLVETTMNQNIHDSLSVPYVQMCLKGLVDRGEV
DISRMEFLAHSISSDSSDDFEQNVVYVYRPRHSVFDILVSDSDDYEDNYS
SSSGTSEAPTSEAPLSDDHEQKVIAMYRPWRSIY*
back to top

spliced messenger RNA

>Gchil1373.t1 ID=Gchil1373.t1|Name=Gchil1373.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00004414_pilon:49785..51189- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCACCGTAAGACCGAAACGATCATGGAATCTTTTGCATTCTTGTC
TGAAACTTTTCTTAGCAAAGCCGAAACAGTGTATGGTACGGTTCATAACT
ATTTTCAAAGACTTGAGTATGACGATGAATCTCTCAGTGTGAATGTCAAC
AATGAGACTGAGTTACCTGATGATAGCTTAGACCCTCTCAAGTCCGAAAT
GAACCCATCATGGGGTTTGAGGTTTGTGGATAGAGATGATCGGTTTTCAG
ACTTTATTCAGCACCACACTCCAGATGGATCCATCTATCGTGGACCACCA
ATCACAGGTATTCATCTCACTTCTGTAACCGCTGTTGAGGGAGACATTCT
AGATCCTGAATGTTTTCATCAGAGACTCCGTCTACCAAGCGAAATTTGTC
AGATTCATCGTTTCGCCGCTTCGTACTATAAGAGCCTGTATCCTTTTCGA
AAGCTTTCTCCTACGCCTTGCAATGATCTGAGCACCGATCACATCTCTAC
ATCATTCTTTTCCGAAAAGATCAGCATGCCAGTCTCCTTTAAAGCCAACC
TTTACCAGGCATGTGTTTTGAAGTTCTTCGAAGAATATGAAAGCGGAACA
TATCTACAGATTCGGAGGATTCCCCTAGCAAGCAATAATGTTCATGAAGA
AAGCAAGCAAGAGAACATTCGGGTTCGTCAGGCCTTGTTGTCATTGAGTA
CCGAACTTGCACCTGTATTGATTCGCACTCGTGTGAAAAAAGATGCTCGT
TTCTCTTTCCGATTGAACGACCGATGGAACCCTTATGCCTCTTCGATTGA
TCTGGCTTCTATGTATCGTGACTTGTACATTTCTTCTCTTGACCGTAGGC
AGGAACGTAGGATTCGGAGATTGGTGGAAATTGAAATCTTAAAAACTTTC
TCGAAGGACCAAAGAACAGCCCAAAACCGCGAAGCCCCGATACCAGTTGA
ATATCTCGTTGAGACCACAATGAATCAAAATATTCATGACTCTTTAAGTG
TTCCTTACGTTCAAATGTGCCTGAAAGGGCTTGTTGACCGTGGTGAAGTT
GACATTTCCAGAATGGAGTTTCTAGCTCATTCCATCAGTTCTGACTCTTC
TGATGATTTCGAGCAGAATGTCGTGTATGTGTATCGACCAAGGCATTCGG
TTTTTGATATACTAGTTAGTGACAGTGATGATTACGAAGATAACTATTCC
AGCAGTTCCGGCACTTCTGAGGCTCCCACTTCTGAGGCTCCCCTTTCTGA
TGATCACGAGCAGAAGGTCATCGCTATGTACCGTCCATGGCGTTCGATTT
ATTAG
back to top

protein sequence of Gchil1373.t1

>Gchil1373.t1 ID=Gchil1373.t1|Name=Gchil1373.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=435bp
MHHRKTETIMESFAFLSETFLSKAETVYGTVHNYFQRLEYDDESLSVNVN
NETELPDDSLDPLKSEMNPSWGLRFVDRDDRFSDFIQHHTPDGSIYRGPP
ITGIHLTSVTAVEGDILDPECFHQRLRLPSEICQIHRFAASYYKSLYPFR
KLSPTPCNDLSTDHISTSFFSEKISMPVSFKANLYQACVLKFFEEYESGT
YLQIRRIPLASNNVHEESKQENIRVRQALLSLSTELAPVLIRTRVKKDAR
FSFRLNDRWNPYASSIDLASMYRDLYISSLDRRQERRIRRLVEIEILKTF
SKDQRTAQNREAPIPVEYLVETTMNQNIHDSLSVPYVQMCLKGLVDRGEV
DISRMEFLAHSISSDSSDDFEQNVVYVYRPRHSVFDILVSDSDDYEDNYS
SSSGTSEAPTSEAPLSDDHEQKVIAMYRPWRSIY*
back to top

mRNA from alignment at tig00004414_pilon:49785..51189-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1373.t1 ID=Gchil1373.t1|Name=Gchil1373.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1405bp|location=Sequence derived from alignment at tig00004414_pilon:49785..51189- (Gracilaria chilensis NLEC103_M9 male)
ATGCATCACCGTAAGACCGAAACGATCATGGAATCTTTTGCATTCTTGTC
TGAAACTTTTCTTAGCAAAGCCGAAACAGGTCAGTTCTTGAAATTTGCCC
AAAAGTATCATTTGGAACAAATTCTAATTGGGGACGGGAAATTCAGTGAG
TCGAACGTTAACTATTTTCAACAACAGAGTGTATGGTACGGTTCATAACT
ATTTTCAAAGACTTGAGTATGACGATGAATCTCTCAGTGTGAATGTCAAC
AATGAGACTGAGTTACCTGATGATAGCTTAGACCCTCTCAAGTCCGAAAT
GAACCCATCATGGGGTTTGAGGTTTGTGGATAGAGATGATCGGTTTTCAG
ACTTTATTCAGCACCACACTCCAGATGGATCCATCTATCGTGGACCACCA
ATCACAGGTATTCATCTCACTTCTGTAACCGCTGTTGAGGGAGACATTCT
AGATCCTGAATGTTTTCATCAGAGACTCCGTCTACCAAGCGAAATTTGTC
AGATTCATCGTTTCGCCGCTTCGTACTATAAGAGCCTGTATCCTTTTCGA
AAGCTTTCTCCTACGCCTTGCAATGATCTGAGCACCGATCACATCTCTAC
ATCATTCTTTTCCGAAAAGATCAGCATGCCAGTCTCCTTTAAAGCCAACC
TTTACCAGGCATGTGTTTTGAAGTTCTTCGAAGAATATGAAAGCGGAACA
TATCTACAGATTCGGAGGATTCCCCTAGCAAGCAATAATGTTCATGAAGA
AAGCAAGCAAGAGAACATTCGGGTTCGTCAGGCCTTGTTGTCATTGAGTA
CCGAACTTGCACCTGTATTGATTCGCACTCGTGTGAAAAAAGATGCTCGT
TTCTCTTTCCGATTGAACGACCGATGGAACCCTTATGCCTCTTCGATTGA
TCTGGCTTCTATGTATCGTGACTTGTACATTTCTTCTCTTGACCGTAGGC
AGGAACGTAGGATTCGGAGATTGGTGGAAATTGAAATCTTAAAAACTTTC
TCGAAGGACCAAAGAACAGCCCAAAACCGCGAAGCCCCGATACCAGTTGA
ATATCTCGTTGAGACCACAATGAATCAAAATATTCATGACTCTTTAAGTG
TTCCTTACGTTCAAATGTGCCTGAAAGGGCTTGTTGACCGTGGTGAAGTT
GACATTTCCAGAATGGAGTTTCTAGCTCATTCCATCAGTTCTGACTCTTC
TGATGATTTCGAGCAGAATGTCGTGTATGTGTATCGACCAAGGCATTCGG
TTTTTGATATACTAGTTAGTGACAGTGATGATTACGAAGATAACTATTCC
AGCAGTTCCGGCACTTCTGAGGCTCCCACTTCTGAGGCTCCCCTTTCTGA
TGATCACGAGCAGAAGGTCATCGCTATGTACCGTCCATGGCGTTCGATTT
ATTAG
back to top

Coding sequence (CDS) from alignment at tig00004414_pilon:49785..51189-

>Gchil1373.t1 ID=Gchil1373.t1|Name=Gchil1373.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1305bp|location=Sequence derived from alignment at tig00004414_pilon:49785..51189- (Gracilaria chilensis NLEC103_M9 male)
ATGCATCACCGTAAGACCGAAACGATCATGGAATCTTTTGCATTCTTGTC
TGAAACTTTTCTTAGCAAAGCCGAAACAGTGTATGGTACGGTTCATAACT
ATTTTCAAAGACTTGAGTATGACGATGAATCTCTCAGTGTGAATGTCAAC
AATGAGACTGAGTTACCTGATGATAGCTTAGACCCTCTCAAGTCCGAAAT
GAACCCATCATGGGGTTTGAGGTTTGTGGATAGAGATGATCGGTTTTCAG
ACTTTATTCAGCACCACACTCCAGATGGATCCATCTATCGTGGACCACCA
ATCACAGGTATTCATCTCACTTCTGTAACCGCTGTTGAGGGAGACATTCT
AGATCCTGAATGTTTTCATCAGAGACTCCGTCTACCAAGCGAAATTTGTC
AGATTCATCGTTTCGCCGCTTCGTACTATAAGAGCCTGTATCCTTTTCGA
AAGCTTTCTCCTACGCCTTGCAATGATCTGAGCACCGATCACATCTCTAC
ATCATTCTTTTCCGAAAAGATCAGCATGCCAGTCTCCTTTAAAGCCAACC
TTTACCAGGCATGTGTTTTGAAGTTCTTCGAAGAATATGAAAGCGGAACA
TATCTACAGATTCGGAGGATTCCCCTAGCAAGCAATAATGTTCATGAAGA
AAGCAAGCAAGAGAACATTCGGGTTCGTCAGGCCTTGTTGTCATTGAGTA
CCGAACTTGCACCTGTATTGATTCGCACTCGTGTGAAAAAAGATGCTCGT
TTCTCTTTCCGATTGAACGACCGATGGAACCCTTATGCCTCTTCGATTGA
TCTGGCTTCTATGTATCGTGACTTGTACATTTCTTCTCTTGACCGTAGGC
AGGAACGTAGGATTCGGAGATTGGTGGAAATTGAAATCTTAAAAACTTTC
TCGAAGGACCAAAGAACAGCCCAAAACCGCGAAGCCCCGATACCAGTTGA
ATATCTCGTTGAGACCACAATGAATCAAAATATTCATGACTCTTTAAGTG
TTCCTTACGTTCAAATGTGCCTGAAAGGGCTTGTTGACCGTGGTGAAGTT
GACATTTCCAGAATGGAGTTTCTAGCTCATTCCATCAGTTCTGACTCTTC
TGATGATTTCGAGCAGAATGTCGTGTATGTGTATCGACCAAGGCATTCGG
TTTTTGATATACTAGTTAGTGACAGTGATGATTACGAAGATAACTATTCC
AGCAGTTCCGGCACTTCTGAGGCTCCCACTTCTGAGGCTCCCCTTTCTGA
TGATCACGAGCAGAAGGTCATCGCTATGTACCGTCCATGGCGTTCGATTT
ATTAG
back to top