Gchil1395.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1395.t1
Unique NameGchil1395.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:433142..433774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thaps42307
PFAMsGTP-bdg_M,GTP-bdg_N,MMR_HSR1
Max annot lvl2836|Bacillariophyta
KEGG koko:K03665
Evalue2.15e-67
EggNOG OGsCOG2262@1|root,KOG0410@2759|Eukaryota,2XBBY@2836|Bacillariophyta
DescriptionGTP-binding GTPase Middle Region
COG categoryS
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1395Gchil1395Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 433142..433774 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1395.t1.start1Gchil1395.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 433142..433144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1395.t1.CDS1Gchil1395.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 433142..433774 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1395.t1.exon1Gchil1395.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 433142..433774 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1395.t1.stop1Gchil1395.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 433772..433774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1395.t1Gchil1395.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 433142..433774 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1395.t1 ID=Gchil1395.t1|Name=Gchil1395.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=211bp
MWTHLERQSGAGSVGLRGPGETQLEVDRRIINTKLNKLKKELELVRAHRT
RVRHARKRNIGLPVVALIGYTNGGKSSLLNALSGADALAANALFATLDPT
TRRANVAGVKLSPEILVTDTVGFVQNLPTQLLAAFRATLEEVVDADMLLH
VVDVSDEQRVMQRKMEAVERGVNDIGAGGKPTIIVLNKVDLMAEDEMERL
KGEIEMGSEL*
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spliced messenger RNA

>Gchil1395.t1 ID=Gchil1395.t1|Name=Gchil1395.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00004414_pilon:433142..433774+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgtggacacatctggaacGTCAGTCCGGCGCCGGTAGCGTCGGGTTGCG
TGGTCCCGGAGAGACTCAGCTTGAAGTAGACAGACGAATAATCAACACAA
AACTAAACAAACTGAAAAAGGAGCTAGAACTGGTACGCGCGCACCGAACA
CGAGTAAGACATGCTCGTAAGAGGAACATAGGGTTGCCTGTGGTGGCTTT
GATCGGGTATACTAACGGGGGGAAAAGCTCGTTGTTGAATGCTCTGAGCG
GAGCGGACGCTCTCGCAGCTAATGCATTGTTTGCGACGCTGGACCCTACA
ACGCGGCGTGCGAATGTGGCTGGTGTGAAGCTGAGCCCCGAGATATTGGT
GACAGACACTGTGGGGTTTGTGCAGAACTTGCCTACGCAACTTCTGGCTG
CGTTTCGCGCTACTTTGGAGGAGGTGGTAGATGCGGACATGCTTCTGCAT
GTGGTGGACGTGTCGGATGAGCAGAGAGTTATGCAGCGAAAGATGGAGGC
GGTTGAACGAGGTGTGAATGATATCGGGGCTGGCGGAAAGCCGACGATTA
TTGTGTTGAACAAGGTGGATTTGATGGCGGAAGATGAGATGGAACGGCTA
AAAGGGGAGATTGAGATGGGGAGCGAGCTGTAG
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protein sequence of Gchil1395.t1

>Gchil1395.t1 ID=Gchil1395.t1|Name=Gchil1395.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=211bp
MWTHLERQSGAGSVGLRGPGETQLEVDRRIINTKLNKLKKELELVRAHRT
RVRHARKRNIGLPVVALIGYTNGGKSSLLNALSGADALAANALFATLDPT
TRRANVAGVKLSPEILVTDTVGFVQNLPTQLLAAFRATLEEVVDADMLLH
VVDVSDEQRVMQRKMEAVERGVNDIGAGGKPTIIVLNKVDLMAEDEMERL
KGEIEMGSEL*
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mRNA from alignment at tig00004414_pilon:433142..433774+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1395.t1 ID=Gchil1395.t1|Name=Gchil1395.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00004414_pilon:433142..433774+ (Gracilaria chilensis NLEC103_M9 male)
atgtggacacatctggaacGTCAGTCCGGCGCCGGTAGCGTCGGGTTGCG
TGGTCCCGGAGAGACTCAGCTTGAAGTAGACAGACGAATAATCAACACAA
AACTAAACAAACTGAAAAAGGAGCTAGAACTGGTACGCGCGCACCGAACA
CGAGTAAGACATGCTCGTAAGAGGAACATAGGGTTGCCTGTGGTGGCTTT
GATCGGGTATACTAACGGGGGGAAAAGCTCGTTGTTGAATGCTCTGAGCG
GAGCGGACGCTCTCGCAGCTAATGCATTGTTTGCGACGCTGGACCCTACA
ACGCGGCGTGCGAATGTGGCTGGTGTGAAGCTGAGCCCCGAGATATTGGT
GACAGACACTGTGGGGTTTGTGCAGAACTTGCCTACGCAACTTCTGGCTG
CGTTTCGCGCTACTTTGGAGGAGGTGGTAGATGCGGACATGCTTCTGCAT
GTGGTGGACGTGTCGGATGAGCAGAGAGTTATGCAGCGAAAGATGGAGGC
GGTTGAACGAGGTGTGAATGATATCGGGGCTGGCGGAAAGCCGACGATTA
TTGTGTTGAACAAGGTGGATTTGATGGCGGAAGATGAGATGGAACGGCTA
AAAGGGGAGATTGAGATGGGGAGCGAGCTGTAG
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Coding sequence (CDS) from alignment at tig00004414_pilon:433142..433774+

>Gchil1395.t1 ID=Gchil1395.t1|Name=Gchil1395.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=633bp|location=Sequence derived from alignment at tig00004414_pilon:433142..433774+ (Gracilaria chilensis NLEC103_M9 male)
atgtggacacatctggaacGTCAGTCCGGCGCCGGTAGCGTCGGGTTGCG
TGGTCCCGGAGAGACTCAGCTTGAAGTAGACAGACGAATAATCAACACAA
AACTAAACAAACTGAAAAAGGAGCTAGAACTGGTACGCGCGCACCGAACA
CGAGTAAGACATGCTCGTAAGAGGAACATAGGGTTGCCTGTGGTGGCTTT
GATCGGGTATACTAACGGGGGGAAAAGCTCGTTGTTGAATGCTCTGAGCG
GAGCGGACGCTCTCGCAGCTAATGCATTGTTTGCGACGCTGGACCCTACA
ACGCGGCGTGCGAATGTGGCTGGTGTGAAGCTGAGCCCCGAGATATTGGT
GACAGACACTGTGGGGTTTGTGCAGAACTTGCCTACGCAACTTCTGGCTG
CGTTTCGCGCTACTTTGGAGGAGGTGGTAGATGCGGACATGCTTCTGCAT
GTGGTGGACGTGTCGGATGAGCAGAGAGTTATGCAGCGAAAGATGGAGGC
GGTTGAACGAGGTGTGAATGATATCGGGGCTGGCGGAAAGCCGACGATTA
TTGTGTTGAACAAGGTGGATTTGATGGCGGAAGATGAGATGGAACGGCTA
AAAGGGGAGATTGAGATGGGGAGCGAGCTGTAG
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