Gchil1401.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1401.t1
Unique NameGchil1401.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length630
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:603376..605265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr47656
PFAMsSNF
Max annot lvl2836|Bacillariophyta
KEGG koko:K05034
KEGG TC2.A.22.3.2
KEGG Pathwayko04727,map04727
Evalue9.7e-172
EggNOG OGsCOG0733@1|root,KOG3660@2759|Eukaryota,2XEEH@2836|Bacillariophyta
DescriptionSodium:neurotransmitter symporter family
COG categoryT
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1401Gchil1401Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 603376..605265 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1401.t1.stop1Gchil1401.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 603376..603378 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1401.t1.CDS1Gchil1401.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 603376..605265 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1401.t1.exon1Gchil1401.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 603376..605265 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1401.t1.start1Gchil1401.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 605263..605265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1401.t1Gchil1401.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 603376..605265 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1401.t1 ID=Gchil1401.t1|Name=Gchil1401.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=630bp
MAHNRGSWSSRAAFIVASIGAAIGFGNIWRFPSLAYAYGGGAFFLPYFLA
LFIIGIPVLILEVAVGQFYQTGDAGAFGKINPRFRGVGLASILAAFVVTT
YYCVLVAWTLRMFVYSCQGSETRWRGITGSQAYDWFENIVTGLETVADNL
APTRLVGPNVGALAITWVLIYLCLAFGVKWTGRIAYVTVVLPIAILIVLL
VRSLTLDGSGTGVKAYVGEWDFSVLSKEPAVWSEAVSQVFFSLSVTFGIM
TAYASYNDRNSPVFANCVIIAISNSIYSIVAGFAVFGTVGYIAQLESNNI
SDLKIGGPGLIFGTFPVALSTLPGYGHWERLFFVALFLLGIDSAFALAEG
VTTVFRDSALLRRFHHAYTTAGVCLAAFLGGLLFCTDSGLLFLDVTDYYV
NFMMILVGFMECFAIGWIYAIESQVSVLGWKPVLAYMMATFGSVCLACGL
WFGAETKPIMKGFVSLVVCYVLLMAGVLFLCYQVKKNSSNELTWSLIVKE
LVVGNVLRLREDFVGVVRYIPFLWFVMVRHMLPQLLLVLFANLATKQNDK
GRRAFAHYGNYPGAYQAVGLVVFLSACCIIVLGAVFPEAFSCFDRCAAGN
IGETVEDKDKAAEEERCENVVDAEGAGGV*
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spliced messenger RNA

>Gchil1401.t1 ID=Gchil1401.t1|Name=Gchil1401.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1890bp|location=Sequence derived from alignment at tig00004414_pilon:603376..605265- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCACAATCGCGGGTCGTGGTCCTCCAGAGCCGCCTTCATCGTCGC
CTCCATAGGCGCCGCCATCGGCTTCGGCAACATATGGCGCTTTCCGTCCC
TGGCGTACGCCTATGGCGGCGGCGCTTTCTTTCTTCCGTATTTTCTCGCT
CTCTTCATCATTGGCATCCCCGTCCTCATCCTGGAGGTCGCCGTGGGCCA
GTTCTACCAGACCGGCGATGCGGGCGCCTTTGGAAAGATCAATCCCCGCT
TTCGCGGCGTGGGGCTTGCTTCCATTCTTGCTGCCTTTGTCGTCACCACC
TACTATTGCGTTCTTGTTGCTTGGACACTGCGAATGTTTGTGTACAGTTG
CCAGGGCTCGGAAACCCGATGGAGGGGTATCACTGGCTCTCAAGCTTACG
ACTGGTTTGAAAACATCGTCACAGGACTGGAGACCGTGGCCGACAACCTT
GCACCGACACGCCTTGTGGGACCAAACGTCGGTGCGCTCGCCATTACGTG
GGTGCTCATTTACCTGTGTCTTGCGTTTGGCGTCAAGTGGACCGGTCGAA
TAGCGTACGTAACCGTTGTACTTCCTATTGCCATCTTAATTGTGCTACTT
GTACGATCCCTCACGCTGGATGGGAGCGGCACAGGCGTCAAAGCGTATGT
AGGAGAATGGGACTTTTCGGTTTTGTCAAAGGAACCTGCTGTGTGGTCAG
AAGCCGTTTCCCAGGTCTTTTTCTCGCTCTCAGTCACATTTGGCATCATG
ACGGCCTATGCGTCCTACAACGATCGCAACTCGCCCGTATTTGCCAACTG
TGTCATAATCGCAATATCCAACTCAATCTACTCTATTGTGGCTGGCTTTG
CAGTGTTCGGAACCGTGGGATACATCGCACAGCTCGAGTCCAACAACATA
AGCGATCTCAAAATTGGCGGCCCAGGCTTAATCTTCGGAACGTTTCCCGT
CGCTCTTTCCACGCTGCCGGGCTATGGCCATTGGGAGCGACTCTTCTTCG
TTGCGCTGTTTCTCCTCGGCATTGATTCGGCTTTTGCGCTTGCCGAGGGG
GTCACTACTGTGTTTCGCGACTCTGCTTTGCTGCGCCGATTTCACCACGC
GTATACCACAGCCGGTGTGTGTCTCGCTGCATTTCTCGGCGGCCTTTTGT
TCTGTACAGACTCTGGATTGCTTTTCCTGGATGTCACGGACTATTATGTG
AACTTTATGATGATCTTGGTGGGTTTTATGGAATGCTTTGCTATCGGATG
GATTTATGCAATTGAGTCTCAAGTCAGTGTGCTTGGGTGGAAGCCTGTTT
TAGCGTACATGATGGCCACATTTGGATCAGTATGTTTGGCGTGTGGGTTG
TGGTTTGGCGCGGAAACAAAACCAATCATGAAGGGATTTGTATCGCTCGT
CGTATGTTATGTGCTTTTAATGGCAGGAGTGCTTTTCTTGTGCTACCAAG
TCAAAAAGAATAGTTCAAACGAACTGACGTGGTCGTTGATTGTGAAGGAA
CTGGTTGTTGGAAACGTGCTTAGGCTTCGGGAGGATTTCGTCGGAGTGGT
GCGATACATTCCGTTTTTATGGTTTGTGATGGTGCGGCACATGTTGCCGC
AATTGTTGCTTGTGCTTTTCGCCAATCTTGCGACGAAGCAAAATGATAAA
GGACGGCGAGCGTTTGCTCATTATGGGAACTATCCAGGTGCGTATCAGGC
TGTTGGACTGGTGGTGTTTCTGTCAGCGTGTTGTATTATTGTGCTGGGCG
CTGTGTTTCCAGAGGCGTTCTCTTGCTTTGACAGATGTGCCGCAGGGAAC
ATCGGGGAAACGGTTGAGGACAAGGACAAAGCTGCTGAAGAAGAAAGGTG
TGAGAACGTTGTTGACGCCGAAGGCGCTGGCGGCGTTTAA
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protein sequence of Gchil1401.t1

>Gchil1401.t1 ID=Gchil1401.t1|Name=Gchil1401.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=630bp
MAHNRGSWSSRAAFIVASIGAAIGFGNIWRFPSLAYAYGGGAFFLPYFLA
LFIIGIPVLILEVAVGQFYQTGDAGAFGKINPRFRGVGLASILAAFVVTT
YYCVLVAWTLRMFVYSCQGSETRWRGITGSQAYDWFENIVTGLETVADNL
APTRLVGPNVGALAITWVLIYLCLAFGVKWTGRIAYVTVVLPIAILIVLL
VRSLTLDGSGTGVKAYVGEWDFSVLSKEPAVWSEAVSQVFFSLSVTFGIM
TAYASYNDRNSPVFANCVIIAISNSIYSIVAGFAVFGTVGYIAQLESNNI
SDLKIGGPGLIFGTFPVALSTLPGYGHWERLFFVALFLLGIDSAFALAEG
VTTVFRDSALLRRFHHAYTTAGVCLAAFLGGLLFCTDSGLLFLDVTDYYV
NFMMILVGFMECFAIGWIYAIESQVSVLGWKPVLAYMMATFGSVCLACGL
WFGAETKPIMKGFVSLVVCYVLLMAGVLFLCYQVKKNSSNELTWSLIVKE
LVVGNVLRLREDFVGVVRYIPFLWFVMVRHMLPQLLLVLFANLATKQNDK
GRRAFAHYGNYPGAYQAVGLVVFLSACCIIVLGAVFPEAFSCFDRCAAGN
IGETVEDKDKAAEEERCENVVDAEGAGGV*
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mRNA from alignment at tig00004414_pilon:603376..605265-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1401.t1 ID=Gchil1401.t1|Name=Gchil1401.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1890bp|location=Sequence derived from alignment at tig00004414_pilon:603376..605265- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCACAATCGCGGGTCGTGGTCCTCCAGAGCCGCCTTCATCGTCGC
CTCCATAGGCGCCGCCATCGGCTTCGGCAACATATGGCGCTTTCCGTCCC
TGGCGTACGCCTATGGCGGCGGCGCTTTCTTTCTTCCGTATTTTCTCGCT
CTCTTCATCATTGGCATCCCCGTCCTCATCCTGGAGGTCGCCGTGGGCCA
GTTCTACCAGACCGGCGATGCGGGCGCCTTTGGAAAGATCAATCCCCGCT
TTCGCGGCGTGGGGCTTGCTTCCATTCTTGCTGCCTTTGTCGTCACCACC
TACTATTGCGTTCTTGTTGCTTGGACACTGCGAATGTTTGTGTACAGTTG
CCAGGGCTCGGAAACCCGATGGAGGGGTATCACTGGCTCTCAAGCTTACG
ACTGGTTTGAAAACATCGTCACAGGACTGGAGACCGTGGCCGACAACCTT
GCACCGACACGCCTTGTGGGACCAAACGTCGGTGCGCTCGCCATTACGTG
GGTGCTCATTTACCTGTGTCTTGCGTTTGGCGTCAAGTGGACCGGTCGAA
TAGCGTACGTAACCGTTGTACTTCCTATTGCCATCTTAATTGTGCTACTT
GTACGATCCCTCACGCTGGATGGGAGCGGCACAGGCGTCAAAGCGTATGT
AGGAGAATGGGACTTTTCGGTTTTGTCAAAGGAACCTGCTGTGTGGTCAG
AAGCCGTTTCCCAGGTCTTTTTCTCGCTCTCAGTCACATTTGGCATCATG
ACGGCCTATGCGTCCTACAACGATCGCAACTCGCCCGTATTTGCCAACTG
TGTCATAATCGCAATATCCAACTCAATCTACTCTATTGTGGCTGGCTTTG
CAGTGTTCGGAACCGTGGGATACATCGCACAGCTCGAGTCCAACAACATA
AGCGATCTCAAAATTGGCGGCCCAGGCTTAATCTTCGGAACGTTTCCCGT
CGCTCTTTCCACGCTGCCGGGCTATGGCCATTGGGAGCGACTCTTCTTCG
TTGCGCTGTTTCTCCTCGGCATTGATTCGGCTTTTGCGCTTGCCGAGGGG
GTCACTACTGTGTTTCGCGACTCTGCTTTGCTGCGCCGATTTCACCACGC
GTATACCACAGCCGGTGTGTGTCTCGCTGCATTTCTCGGCGGCCTTTTGT
TCTGTACAGACTCTGGATTGCTTTTCCTGGATGTCACGGACTATTATGTG
AACTTTATGATGATCTTGGTGGGTTTTATGGAATGCTTTGCTATCGGATG
GATTTATGCAATTGAGTCTCAAGTCAGTGTGCTTGGGTGGAAGCCTGTTT
TAGCGTACATGATGGCCACATTTGGATCAGTATGTTTGGCGTGTGGGTTG
TGGTTTGGCGCGGAAACAAAACCAATCATGAAGGGATTTGTATCGCTCGT
CGTATGTTATGTGCTTTTAATGGCAGGAGTGCTTTTCTTGTGCTACCAAG
TCAAAAAGAATAGTTCAAACGAACTGACGTGGTCGTTGATTGTGAAGGAA
CTGGTTGTTGGAAACGTGCTTAGGCTTCGGGAGGATTTCGTCGGAGTGGT
GCGATACATTCCGTTTTTATGGTTTGTGATGGTGCGGCACATGTTGCCGC
AATTGTTGCTTGTGCTTTTCGCCAATCTTGCGACGAAGCAAAATGATAAA
GGACGGCGAGCGTTTGCTCATTATGGGAACTATCCAGGTGCGTATCAGGC
TGTTGGACTGGTGGTGTTTCTGTCAGCGTGTTGTATTATTGTGCTGGGCG
CTGTGTTTCCAGAGGCGTTCTCTTGCTTTGACAGATGTGCCGCAGGGAAC
ATCGGGGAAACGGTTGAGGACAAGGACAAAGCTGCTGAAGAAGAAAGGTG
TGAGAACGTTGTTGACGCCGAAGGCGCTGGCGGCGTTTAA
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Coding sequence (CDS) from alignment at tig00004414_pilon:603376..605265-

>Gchil1401.t1 ID=Gchil1401.t1|Name=Gchil1401.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1890bp|location=Sequence derived from alignment at tig00004414_pilon:603376..605265- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCACAATCGCGGGTCGTGGTCCTCCAGAGCCGCCTTCATCGTCGC
CTCCATAGGCGCCGCCATCGGCTTCGGCAACATATGGCGCTTTCCGTCCC
TGGCGTACGCCTATGGCGGCGGCGCTTTCTTTCTTCCGTATTTTCTCGCT
CTCTTCATCATTGGCATCCCCGTCCTCATCCTGGAGGTCGCCGTGGGCCA
GTTCTACCAGACCGGCGATGCGGGCGCCTTTGGAAAGATCAATCCCCGCT
TTCGCGGCGTGGGGCTTGCTTCCATTCTTGCTGCCTTTGTCGTCACCACC
TACTATTGCGTTCTTGTTGCTTGGACACTGCGAATGTTTGTGTACAGTTG
CCAGGGCTCGGAAACCCGATGGAGGGGTATCACTGGCTCTCAAGCTTACG
ACTGGTTTGAAAACATCGTCACAGGACTGGAGACCGTGGCCGACAACCTT
GCACCGACACGCCTTGTGGGACCAAACGTCGGTGCGCTCGCCATTACGTG
GGTGCTCATTTACCTGTGTCTTGCGTTTGGCGTCAAGTGGACCGGTCGAA
TAGCGTACGTAACCGTTGTACTTCCTATTGCCATCTTAATTGTGCTACTT
GTACGATCCCTCACGCTGGATGGGAGCGGCACAGGCGTCAAAGCGTATGT
AGGAGAATGGGACTTTTCGGTTTTGTCAAAGGAACCTGCTGTGTGGTCAG
AAGCCGTTTCCCAGGTCTTTTTCTCGCTCTCAGTCACATTTGGCATCATG
ACGGCCTATGCGTCCTACAACGATCGCAACTCGCCCGTATTTGCCAACTG
TGTCATAATCGCAATATCCAACTCAATCTACTCTATTGTGGCTGGCTTTG
CAGTGTTCGGAACCGTGGGATACATCGCACAGCTCGAGTCCAACAACATA
AGCGATCTCAAAATTGGCGGCCCAGGCTTAATCTTCGGAACGTTTCCCGT
CGCTCTTTCCACGCTGCCGGGCTATGGCCATTGGGAGCGACTCTTCTTCG
TTGCGCTGTTTCTCCTCGGCATTGATTCGGCTTTTGCGCTTGCCGAGGGG
GTCACTACTGTGTTTCGCGACTCTGCTTTGCTGCGCCGATTTCACCACGC
GTATACCACAGCCGGTGTGTGTCTCGCTGCATTTCTCGGCGGCCTTTTGT
TCTGTACAGACTCTGGATTGCTTTTCCTGGATGTCACGGACTATTATGTG
AACTTTATGATGATCTTGGTGGGTTTTATGGAATGCTTTGCTATCGGATG
GATTTATGCAATTGAGTCTCAAGTCAGTGTGCTTGGGTGGAAGCCTGTTT
TAGCGTACATGATGGCCACATTTGGATCAGTATGTTTGGCGTGTGGGTTG
TGGTTTGGCGCGGAAACAAAACCAATCATGAAGGGATTTGTATCGCTCGT
CGTATGTTATGTGCTTTTAATGGCAGGAGTGCTTTTCTTGTGCTACCAAG
TCAAAAAGAATAGTTCAAACGAACTGACGTGGTCGTTGATTGTGAAGGAA
CTGGTTGTTGGAAACGTGCTTAGGCTTCGGGAGGATTTCGTCGGAGTGGT
GCGATACATTCCGTTTTTATGGTTTGTGATGGTGCGGCACATGTTGCCGC
AATTGTTGCTTGTGCTTTTCGCCAATCTTGCGACGAAGCAAAATGATAAA
GGACGGCGAGCGTTTGCTCATTATGGGAACTATCCAGGTGCGTATCAGGC
TGTTGGACTGGTGGTGTTTCTGTCAGCGTGTTGTATTATTGTGCTGGGCG
CTGTGTTTCCAGAGGCGTTCTCTTGCTTTGACAGATGTGCCGCAGGGAAC
ATCGGGGAAACGGTTGAGGACAAGGACAAAGCTGCTGAAGAAGAAAGGTG
TGAGAACGTTGTTGACGCCGAAGGCGCTGGCGGCGTTTAA
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