Gchil2811.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2811.t2
Unique NameGchil2811.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length82
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:602367..603146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2811Gchil2811Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 602077..603146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2811.t2Gchil2811.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 602367..603146 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2811.t2.start1Gchil2811.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 602367..602369 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2811.t2.CDS1Gchil2811.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 602367..602417 +
Gchil2811.t2.CDS2Gchil2811.t2.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 602835..602901 +
Gchil2811.t2.CDS3Gchil2811.t2.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 603019..603146 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2811.t2.exon1Gchil2811.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 602367..602417 +
Gchil2811.t2.exon2Gchil2811.t2.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 602835..602901 +
Gchil2811.t2.exon3Gchil2811.t2.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 603019..603146 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2811.t2.intron1Gchil2811.t2.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 602418..602834 +
Gchil2811.t2.intron2Gchil2811.t2.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 602902..603018 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2811.t2.stop1Gchil2811.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 603144..603146 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2811.t2 ID=Gchil2811.t2|Name=Gchil2811.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=82bp
MATPFIWESDTFRKQFCVPHSPSWPETAVVETLQRSRPIQYLDQKIFDRF
EKENHALFNQLVKKHGNLEFLDLLITKNSGV*
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spliced messenger RNA

>Gchil2811.t2 ID=Gchil2811.t2|Name=Gchil2811.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=246bp|location=Sequence derived from alignment at tig00004406_pilon:602367..603146+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACACCATTCATCTGGGAAAGCGATACCTTCCGGAAGCAGTTTTG
CgttccgcaCTCCCCCTCTTGGCCGGAGACAGCTGTTGTCGAGACACTAC
AAAGATCGCGGCCAATCCAGTACCTCGATCAAAAGATCTTTGACCGCTTT
GAGAAAGAAAACCACGCACTTTTCAACCAACTGGTGAAAAAGCACGGCAA
CCTTGAGTTCCTCGATCTATTGATCACTAAGAACTCAGGCGTCTAA
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protein sequence of Gchil2811.t2

>Gchil2811.t2 ID=Gchil2811.t2|Name=Gchil2811.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=82bp
MATPFIWESDTFRKQFCVPHSPSWPETAVVETLQRSRPIQYLDQKIFDRF
EKENHALFNQLVKKHGNLEFLDLLITKNSGV*
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mRNA from alignment at tig00004406_pilon:602367..603146+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2811.t2 ID=Gchil2811.t2|Name=Gchil2811.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=780bp|location=Sequence derived from alignment at tig00004406_pilon:602367..603146+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTACACCATTCATCTGGGAAAGCGATACCTTCCGGAAGCAGTTTTG
CGTTCGCTTTTGGCAGGCTGCTTTTATATACAGTACAAGTCCCAGTCACG
TGTCAATTGCCACGTGGCATGCGCACTGACGCGTCATTACACTGGGGAGG
GGAAGGGACACGCGCCTGCTTTGTATCAGTTTATGCCCTTTTTTGGGACA
ACAAACAGTCTGTTAGCACACTGCGGTTTTTTGATTTCATGATAATTTTG
ACGTTTTTCTGtcgtacttgtagtggcagcgtcgcgcagtggaactatcg
tagagcgcatgcgaaatcagaaaacgggaccaagtaccccgttctccttt
tggagcgaccatgttcgcactggccgctccgggctttgtttacttgcccc
gggaatcggacgcgcgatctccgacagcacttcctattgttacacgtttc
gtgtgttgtcgattttaggttccgcaCTCCCCCTCTTGGCCGGAGACAGC
TGTTGTCGAGACACTACAAAGATCGCGGCCAATCCGTAAGTAACTCACGG
ACGACATCGCCGCACCACGCTTCACCACGTCAATCATATGCTCTCTAACT
GCTTTGCGTTTTTACTGCTGTTTCTTTTGTGCGTGCAATTAAAAAAGTAA
AGAGTACCTCGATCAAAAGATCTTTGACCGCTTTGAGAAAGAAAACCACG
CACTTTTCAACCAACTGGTGAAAAAGCACGGCAACCTTGAGTTCCTCGAT
CTATTGATCACTAAGAACTCAGGCGTCTAA
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Coding sequence (CDS) from alignment at tig00004406_pilon:602367..603146+

>Gchil2811.t2 ID=Gchil2811.t2|Name=Gchil2811.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=246bp|location=Sequence derived from alignment at tig00004406_pilon:602367..603146+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTACACCATTCATCTGGGAAAGCGATACCTTCCGGAAGCAGTTTTG
CgttccgcaCTCCCCCTCTTGGCCGGAGACAGCTGTTGTCGAGACACTAC
AAAGATCGCGGCCAATCCAGTACCTCGATCAAAAGATCTTTGACCGCTTT
GAGAAAGAAAACCACGCACTTTTCAACCAACTGGTGAAAAAGCACGGCAA
CCTTGAGTTCCTCGATCTATTGATCACTAAGAACTCAGGCGTCTAA
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