Gchil2857.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2857.t1
Unique NameGchil2857.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length396
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:926158..927345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705122.1
PFAMsRETICULATA-like
Max annot lvl2759|Eukaryota
Evalue3.35e-95
EggNOG OGs28IK9@1|root,2QQX6@2759|Eukaryota
DescriptionProtein RETICULATA-related
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2857Gchil2857Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 926158..927345 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2857.t1.stop1Gchil2857.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 926158..926160 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2857.t1.CDS1Gchil2857.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 926158..927345 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2857.t1.exon1Gchil2857.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 926158..927345 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2857.t1.start1Gchil2857.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 927343..927345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2857.t1Gchil2857.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 926158..927345 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2857.t1 ID=Gchil2857.t1|Name=Gchil2857.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=396bp
MANPTAFVSRLPLCAARLSSTRHFSTCAKFSPRTVLPTRCARLLCSLSPI
QPGASDIDFWPIAPTPNSHFPAEDQAAAQPSYDGASIPPSGSSSGSGSGD
SDDEAAPSPDTKLSALLRDSNAALTDIPADILRAYREGLIPLSAISNFFS
ARANVLSRALMGTASGMRNRFLADKLFLLKILIEEGIGVFGKLSAEYEQR
RQNFWDEKEFVFANLVTALLADFALVYLPAPSVSLSKASAGKGIMSWISN
LSKTLPSNIFQTDRPFTLAQRAAGFTLKASQLFVVGMACCFTGVILTNSL
IFIREKLDNNYVPKTQKQNPVLVSVLYAVFLGASSGTRYQLVNGVENHVF
PRIFLKTPQIVEEASTFLLRYGNTFWGSQQWVMFCRYTNVQKVKD*
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spliced messenger RNA

>Gchil2857.t1 ID=Gchil2857.t1|Name=Gchil2857.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00004406_pilon:926158..927345- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAACCCTACTGCCTTCGTCTCGCGTCTACCTCTCTGTGCCGCGCG
CCTTTCTTCCACACGCCACTTCTCCACATGTGCCAAATTTTCACCTCGCA
CCGTCCTTCCCACGCGCTGTGCTCGCCTGCTGTGCAGTCTCTCCCCAATT
CAGCCTGGCGCTTCAGACATCGACTTCTGGCCCATTGCGCCCACCCCCAA
CTCCCACTTCCCCGCAGAAGACCAGGCCGCTGCCCAGCCTTCATACGATG
GAGCCTCTATTCCTCCGTCAGGTTCGTCATCGGGGTCTGGATCAGGTGAT
TCCGATGATGAAGCAGCGCCCTCCCCCGACACAAAACTCTCAGCTCTGCT
GCGCGACTCTAACGCTGCCTTAACCGACATTCCTGCTGATATACTCAGAG
CATACCGAGAAGGCTTAATCCCACTCTCCGCCATTTCCAACTTCTTTTCT
GCGCGTGCCAACGTCCTGTCCCGCGCTCTGATGGGTACAGCTTCAGGCAT
GCGCAACAGATTCCTGGCAGATAAACTATTCCTGCTCAAGATTCTCATCG
AAGAAGGCATTGGTGTATTCGGTAAACTTTCTGCCGAATATGAGCAACGC
CGCCAAAATTTTTGGGACGAAAAGGAGTTTGTCTTTGCCAACTTGGTCAC
GGCTCTTTTGGCCGACTTTGCTCTGGTTTATCTGCCAGCTCCGTCCGTCT
CGCTGTCAAAGGCTTCGGCGGGAAAAGGCATTATGTCTTGGATCAGTAAT
CTATCAAAAACGTTACCAAGCAACATCTTCCAGACCGACCGACCGTTCAC
CTTGGCGCAAAGAGCTGCTGGCTTCACTCTCAAGGCCAGCCAGCTCTTCG
TGGTGGGCATGGCATGTTGCTTCACTGGCGTCATCCTCACAAACTCCCTC
ATCTTCATTCGAGAGAAACTCGATAACAATTACGTTCCAAAAACCCAAAA
GCAAAACCCTGTGCTTGTTTCCGTGCTCTACGCAGTGTTCTTGGGAGCTT
CGTCTGGAACTCGGTACCAGCTTGTGAATGGTGTTGAGAATCACGTTTTC
CCCCGCATCTTTCTCAAGACTCCGCAAATTGTCGAAGAAGCATCCACCTT
CCTTCTACGCTATGGTAATACGTTCTGGGGGTCTCAGCAATGGGTTATGT
TTTGTCGTTACACAAATGTGCAAAAGGTCAAGGATTAA
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protein sequence of Gchil2857.t1

>Gchil2857.t1 ID=Gchil2857.t1|Name=Gchil2857.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=396bp
MANPTAFVSRLPLCAARLSSTRHFSTCAKFSPRTVLPTRCARLLCSLSPI
QPGASDIDFWPIAPTPNSHFPAEDQAAAQPSYDGASIPPSGSSSGSGSGD
SDDEAAPSPDTKLSALLRDSNAALTDIPADILRAYREGLIPLSAISNFFS
ARANVLSRALMGTASGMRNRFLADKLFLLKILIEEGIGVFGKLSAEYEQR
RQNFWDEKEFVFANLVTALLADFALVYLPAPSVSLSKASAGKGIMSWISN
LSKTLPSNIFQTDRPFTLAQRAAGFTLKASQLFVVGMACCFTGVILTNSL
IFIREKLDNNYVPKTQKQNPVLVSVLYAVFLGASSGTRYQLVNGVENHVF
PRIFLKTPQIVEEASTFLLRYGNTFWGSQQWVMFCRYTNVQKVKD*
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mRNA from alignment at tig00004406_pilon:926158..927345-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2857.t1 ID=Gchil2857.t1|Name=Gchil2857.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00004406_pilon:926158..927345- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGAACCCTACTGCCTTCGTCTCGCGTCTACCTCTCTGTGCCGCGCG
CCTTTCTTCCACACGCCACTTCTCCACATGTGCCAAATTTTCACCTCGCA
CCGTCCTTCCCACGCGCTGTGCTCGCCTGCTGTGCAGTCTCTCCCCAATT
CAGCCTGGCGCTTCAGACATCGACTTCTGGCCCATTGCGCCCACCCCCAA
CTCCCACTTCCCCGCAGAAGACCAGGCCGCTGCCCAGCCTTCATACGATG
GAGCCTCTATTCCTCCGTCAGGTTCGTCATCGGGGTCTGGATCAGGTGAT
TCCGATGATGAAGCAGCGCCCTCCCCCGACACAAAACTCTCAGCTCTGCT
GCGCGACTCTAACGCTGCCTTAACCGACATTCCTGCTGATATACTCAGAG
CATACCGAGAAGGCTTAATCCCACTCTCCGCCATTTCCAACTTCTTTTCT
GCGCGTGCCAACGTCCTGTCCCGCGCTCTGATGGGTACAGCTTCAGGCAT
GCGCAACAGATTCCTGGCAGATAAACTATTCCTGCTCAAGATTCTCATCG
AAGAAGGCATTGGTGTATTCGGTAAACTTTCTGCCGAATATGAGCAACGC
CGCCAAAATTTTTGGGACGAAAAGGAGTTTGTCTTTGCCAACTTGGTCAC
GGCTCTTTTGGCCGACTTTGCTCTGGTTTATCTGCCAGCTCCGTCCGTCT
CGCTGTCAAAGGCTTCGGCGGGAAAAGGCATTATGTCTTGGATCAGTAAT
CTATCAAAAACGTTACCAAGCAACATCTTCCAGACCGACCGACCGTTCAC
CTTGGCGCAAAGAGCTGCTGGCTTCACTCTCAAGGCCAGCCAGCTCTTCG
TGGTGGGCATGGCATGTTGCTTCACTGGCGTCATCCTCACAAACTCCCTC
ATCTTCATTCGAGAGAAACTCGATAACAATTACGTTCCAAAAACCCAAAA
GCAAAACCCTGTGCTTGTTTCCGTGCTCTACGCAGTGTTCTTGGGAGCTT
CGTCTGGAACTCGGTACCAGCTTGTGAATGGTGTTGAGAATCACGTTTTC
CCCCGCATCTTTCTCAAGACTCCGCAAATTGTCGAAGAAGCATCCACCTT
CCTTCTACGCTATGGTAATACGTTCTGGGGGTCTCAGCAATGGGTTATGT
TTTGTCGTTACACAAATGTGCAAAAGGTCAAGGATTAA
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Coding sequence (CDS) from alignment at tig00004406_pilon:926158..927345-

>Gchil2857.t1 ID=Gchil2857.t1|Name=Gchil2857.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1188bp|location=Sequence derived from alignment at tig00004406_pilon:926158..927345- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGAACCCTACTGCCTTCGTCTCGCGTCTACCTCTCTGTGCCGCGCG
CCTTTCTTCCACACGCCACTTCTCCACATGTGCCAAATTTTCACCTCGCA
CCGTCCTTCCCACGCGCTGTGCTCGCCTGCTGTGCAGTCTCTCCCCAATT
CAGCCTGGCGCTTCAGACATCGACTTCTGGCCCATTGCGCCCACCCCCAA
CTCCCACTTCCCCGCAGAAGACCAGGCCGCTGCCCAGCCTTCATACGATG
GAGCCTCTATTCCTCCGTCAGGTTCGTCATCGGGGTCTGGATCAGGTGAT
TCCGATGATGAAGCAGCGCCCTCCCCCGACACAAAACTCTCAGCTCTGCT
GCGCGACTCTAACGCTGCCTTAACCGACATTCCTGCTGATATACTCAGAG
CATACCGAGAAGGCTTAATCCCACTCTCCGCCATTTCCAACTTCTTTTCT
GCGCGTGCCAACGTCCTGTCCCGCGCTCTGATGGGTACAGCTTCAGGCAT
GCGCAACAGATTCCTGGCAGATAAACTATTCCTGCTCAAGATTCTCATCG
AAGAAGGCATTGGTGTATTCGGTAAACTTTCTGCCGAATATGAGCAACGC
CGCCAAAATTTTTGGGACGAAAAGGAGTTTGTCTTTGCCAACTTGGTCAC
GGCTCTTTTGGCCGACTTTGCTCTGGTTTATCTGCCAGCTCCGTCCGTCT
CGCTGTCAAAGGCTTCGGCGGGAAAAGGCATTATGTCTTGGATCAGTAAT
CTATCAAAAACGTTACCAAGCAACATCTTCCAGACCGACCGACCGTTCAC
CTTGGCGCAAAGAGCTGCTGGCTTCACTCTCAAGGCCAGCCAGCTCTTCG
TGGTGGGCATGGCATGTTGCTTCACTGGCGTCATCCTCACAAACTCCCTC
ATCTTCATTCGAGAGAAACTCGATAACAATTACGTTCCAAAAACCCAAAA
GCAAAACCCTGTGCTTGTTTCCGTGCTCTACGCAGTGTTCTTGGGAGCTT
CGTCTGGAACTCGGTACCAGCTTGTGAATGGTGTTGAGAATCACGTTTTC
CCCCGCATCTTTCTCAAGACTCCGCAAATTGTCGAAGAAGCATCCACCTT
CCTTCTACGCTATGGTAATACGTTCTGGGGGTCTCAGCAATGGGTTATGT
TTTGTCGTTACACAAATGTGCAAAAGGTCAAGGATTAA
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