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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 102107.XP_008241735.1 |
| PFAMs | DYW_deaminase,PPR,PPR_2 |
| Max annot lvl | 35493|Streptophyta |
| GOs | GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363 |
| Evalue | 4.87e-10 |
| EggNOG OGs | KOG4197@1|root,KOG4197@2759|Eukaryota,37NMW@33090|Viridiplantae,3G918@35493|Streptophyta,4JDA4@91835|fabids |
| Description | Pentatricopeptide repeat-containing protein |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil2792.t1 ID=Gchil2792.t1|Name=Gchil2792.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=807bp METHCHCRTQAAPLFLSPTALPHQQRRWANSRCPSTAQRPILAHQARPRF SPDIQRAAALRRAGKLDKARDVLHKASPDTRRHPAYYRELMSITTALVAQ SSSAAKAEQLWCALEPLLLQDYSRPDSLSFNRLLSALRLLDSRRQLTKRN ENEELRILLIAQRIFDFMRDISVRPDQFTMSILFNMCAYRASERFAVMFE QQATDRFDFKPNVVSGSALLAAFAKAGSLEQLDRVVNLLREKQVPFNERS YTSIISAHLKHGQHVKVLQYFDQAIACPSVTPNVFLFSGVLTSCLRVRDA VNGLRVFEVMQQKKVHPTEAILNLMVELAARTGNIPLGVECITKWAPKYV TASEAFDRDKIIASWKRNPANPSNAIDALHKVLQYIEGKGYSKGEMSTYN AALSTLVALGMIDHVEEFLERIRRRGLAPDLVTYNILMHSYGTAGNLNQA LGVLRDMKQNRVKPDQITFNTLLDLLLKSGEVDKVESLLQEMEHDEKLEI DAVGRCIQLKVYRIQGNKQAALQVHNTTQRLDKPLDAKAYGLLLSILFEF DEHEQAISIFGWLVWKRQAAGPVYNVMIDNIGKREDGCEQCMKLFNHMKR RGIPPDKLTYTTMIRVLSKSGLMDRAFRLLSEMQDIGLAMSDMYAWTSLM DGFRRCGQWQRAVELLAFMKKHSSKSKYSLVPRPSTACYNAALYAAGIGG QHWKTCVKIYNSLLADEIQRPDYITYSAMASILLRRRRRISEWHIVRQVC QALEELLLEDNKHRNDGSKAARTKNGSHQSLSKPVRKKLLSKLSDLKTLI GPEINH* back to topspliced messenger RNA >Gchil2792.t1 ID=Gchil2792.t1|Name=Gchil2792.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2421bp|location=Sequence derived from alignment at tig00004406_pilon:517363..519783+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGAAACGCATTGCCATTGTCGGACGCAGGCTGCCCCATTATTTCTATC TCCCACTGCGCTTCCTCATCAGCAACGGCGTTGGGCCAATTCAAGGTGCC CATCCACAGCTCAGCGTCCCATATTAGCCCATCAAGCACGCCCACGCTTC TCTCCGGATATTCAGCGTGCCGCGGCTCTGAGAAGGGCAGGTAAGCTCGA CAAAGCGCGTGATGTGCTGCACAAGGCTTCCCCTGACACACGCCGCCATC CGGCTTATTATCGAGAGCTGATGTCAATCACTACAGCCCTTGTTGCACAG AGTTCGTCCGCTGCGAAAGCTGAACAGCTCTGGTGTGCCCTTGAGCCACT TCTGTTACAAGATTATTCGCGTCCGGATTCCCTCTCTTTCAATCGTCTTT TAAGCGCATTACGCCTCTTAGACAGTCGGAGGCAGCTCACAAAACGTAAT GAGAATGAAGAGCTACGTATTTTGCTCATAGCGCAGCGCATATTTGATTT CATGCGTGATATATCTGTGCGTCCGGATCAGTTCACAATGTCTATACTGT TTAATATGTGTGCCTATCGCGCTAGCGAGCGCTTTGCTGTTATGTTTGAG CAGCAAGCCACTGATCGTTTTGACTTCAAGCCCAATGTGGTGTCTGGCTC CGCCTTGCTTGCAGCATTTGCAAAGGCGGGTTCTTTGGAGCAACTTGACC GAGTCGTCAATCTCCTTCGAGAGAAACAGGTCCCATTTAATGAACGAAGT TACACATCGATCATTTCTGCACACCTCAAACATGGACAACATGTCAAAGT GCTCCAATACTTTGACCAAGCCATTGCTTGTCCATCCGTCACCCCGAATG TCTTCTTGTTCTCTGGTGTATTGACGTCGTGCCTTCGCGTACGAGATGCC GTTAATGGGCTTCGCGTGTTTGAAGTAATGCAACAAAAAAAAGTGCATCC AACGGAAGCCATACTCAATCTGATGGTAGAGTTAGCTGCCAGAACTGGAA ACATTCCTCTTGGCGTCGAATGTATCACGAAATGGGCTCCCAAGTATGTA ACTGCGAGCGAAGCATTTGATCGCGATAAAATTATTGCTTCATGGAAGAG AAACCCAGCAAACCCGTCTAATGCAATTGATGCATTGCATAAAGTCTTGC AATACATTGAAGGCAAAGGTTATAGCAAAGGCGAGATGTCTACGTATAAT GCAGCTTTGTCGACTCTTGTTGCTCTAGGTATGATTGACCATGTTGAAGA ATTCCTAGAGCGCATTCGAAGAAGAGGTCTCGCTCCAGATCTTGTGACGT ACAACATTTTGATGCATTCATACGGAACGGCTGGCAACCTGAATCAGGCG CTAGGCGTTCTTCGTGATATGAAGCAGAATCGTGTTAAGCCAGATCAAAT TACTTTTAACACGCTTCTTGACTTGCTCTTGAAATCGGGAGAGGTCGACA AGGTAGAAAGTCTTTTGCAAGAGATGGAACACGATGAAAAGCTAGAGATA GATGCGGTCGGCAGATGTATTCAACTCAAGGTGTACAGAATTCAGGGAAA CAAGCAAGCAGCACTCCAAGTGCACAATACTACACAGCGACTGGACAAAC CCCTTGATGCAAAGGCGTATGGGTTGTTGCTGTCCATTCTCTTCGAGTTT GATGAACACGAGCAGGCCATTTCTATTTTCGGGTGGTTGGTATGGAAACG CCAAGCAGCAGGCCCCGTCTACAACGTCATGATAGACAACATCGGAAAGC GAGAAGACGGATGTGAACAATGCATGAAACTGTTCAATCACATGAAAAGA AGAGGAATCCCACCCGACAAATTGACGTACACCACAATGATCCGCGTGTT GTCAAAAAGCGGCCTTATGGATCGAGCCTTCCGCTTGCTCAGTGAGATGC AAGATATAGGTTTAGCCATGTCCGATATGTACGCCTGGACGAGCTTGATG GATGGATTCCGAAGGTGTGGGCAATGGCAACGAGCGGTTGAACTGCTGGC TTTCATGAAGAAGCACAGTTCCAAATCCAAATATTCGCTCGTGCCCAGAC CGTCGACTGCGTGCTACAACGCGGCTCTATACGCTGCGGGAATAGGAGGT CAACATTGGAAAACTTGTGTAAAGATTTACAACTCTCTTCTCGCGGACGA GATCCAACGACCTGATTATATCACGTATTCTGCCATGGCGAGCATCCTTC TGAGAAGGAGACGCCGCATTTCAGAATGGCACATCGTGAGGCAAGTTTGT CAAGCCCTTGAAGAATTGCTTCTGGAGGACAACAAACACCGGAACGATGG TTCGAAAGCAGCGCGTACAAAGAACGGCTCACATCAAAGTTTGAGCAAAC CCGTGAGAAAGAAGCTCCTGTCAAAACTAAGTGACTTGAAGACATTGATA GGGCCCGAGATCAACCACTAA back to topprotein sequence of Gchil2792.t1 >Gchil2792.t1 ID=Gchil2792.t1|Name=Gchil2792.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=807bp
METHCHCRTQAAPLFLSPTALPHQQRRWANSRCPSTAQRPILAHQARPRF SPDIQRAAALRRAGKLDKARDVLHKASPDTRRHPAYYRELMSITTALVAQ SSSAAKAEQLWCALEPLLLQDYSRPDSLSFNRLLSALRLLDSRRQLTKRN ENEELRILLIAQRIFDFMRDISVRPDQFTMSILFNMCAYRASERFAVMFE QQATDRFDFKPNVVSGSALLAAFAKAGSLEQLDRVVNLLREKQVPFNERS YTSIISAHLKHGQHVKVLQYFDQAIACPSVTPNVFLFSGVLTSCLRVRDA VNGLRVFEVMQQKKVHPTEAILNLMVELAARTGNIPLGVECITKWAPKYV TASEAFDRDKIIASWKRNPANPSNAIDALHKVLQYIEGKGYSKGEMSTYN AALSTLVALGMIDHVEEFLERIRRRGLAPDLVTYNILMHSYGTAGNLNQA LGVLRDMKQNRVKPDQITFNTLLDLLLKSGEVDKVESLLQEMEHDEKLEI DAVGRCIQLKVYRIQGNKQAALQVHNTTQRLDKPLDAKAYGLLLSILFEF DEHEQAISIFGWLVWKRQAAGPVYNVMIDNIGKREDGCEQCMKLFNHMKR RGIPPDKLTYTTMIRVLSKSGLMDRAFRLLSEMQDIGLAMSDMYAWTSLM DGFRRCGQWQRAVELLAFMKKHSSKSKYSLVPRPSTACYNAALYAAGIGG QHWKTCVKIYNSLLADEIQRPDYITYSAMASILLRRRRRISEWHIVRQVC QALEELLLEDNKHRNDGSKAARTKNGSHQSLSKPVRKKLLSKLSDLKTLI GPEINH* back to topmRNA from alignment at tig00004406_pilon:517363..519783+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil2792.t1 ID=Gchil2792.t1|Name=Gchil2792.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2421bp|location=Sequence derived from alignment at tig00004406_pilon:517363..519783+ (Gracilaria chilensis NLEC103_M9 male) ATGGAAACGCATTGCCATTGTCGGACGCAGGCTGCCCCATTATTTCTATC
TCCCACTGCGCTTCCTCATCAGCAACGGCGTTGGGCCAATTCAAGGTGCC
CATCCACAGCTCAGCGTCCCATATTAGCCCATCAAGCACGCCCACGCTTC
TCTCCGGATATTCAGCGTGCCGCGGCTCTGAGAAGGGCAGGTAAGCTCGA
CAAAGCGCGTGATGTGCTGCACAAGGCTTCCCCTGACACACGCCGCCATC
CGGCTTATTATCGAGAGCTGATGTCAATCACTACAGCCCTTGTTGCACAG
AGTTCGTCCGCTGCGAAAGCTGAACAGCTCTGGTGTGCCCTTGAGCCACT
TCTGTTACAAGATTATTCGCGTCCGGATTCCCTCTCTTTCAATCGTCTTT
TAAGCGCATTACGCCTCTTAGACAGTCGGAGGCAGCTCACAAAACGTAAT
GAGAATGAAGAGCTACGTATTTTGCTCATAGCGCAGCGCATATTTGATTT
CATGCGTGATATATCTGTGCGTCCGGATCAGTTCACAATGTCTATACTGT
TTAATATGTGTGCCTATCGCGCTAGCGAGCGCTTTGCTGTTATGTTTGAG
CAGCAAGCCACTGATCGTTTTGACTTCAAGCCCAATGTGGTGTCTGGCTC
CGCCTTGCTTGCAGCATTTGCAAAGGCGGGTTCTTTGGAGCAACTTGACC
GAGTCGTCAATCTCCTTCGAGAGAAACAGGTCCCATTTAATGAACGAAGT
TACACATCGATCATTTCTGCACACCTCAAACATGGACAACATGTCAAAGT
GCTCCAATACTTTGACCAAGCCATTGCTTGTCCATCCGTCACCCCGAATG
TCTTCTTGTTCTCTGGTGTATTGACGTCGTGCCTTCGCGTACGAGATGCC
GTTAATGGGCTTCGCGTGTTTGAAGTAATGCAACAAAAAAAAGTGCATCC
AACGGAAGCCATACTCAATCTGATGGTAGAGTTAGCTGCCAGAACTGGAA
ACATTCCTCTTGGCGTCGAATGTATCACGAAATGGGCTCCCAAGTATGTA
ACTGCGAGCGAAGCATTTGATCGCGATAAAATTATTGCTTCATGGAAGAG
AAACCCAGCAAACCCGTCTAATGCAATTGATGCATTGCATAAAGTCTTGC
AATACATTGAAGGCAAAGGTTATAGCAAAGGCGAGATGTCTACGTATAAT
GCAGCTTTGTCGACTCTTGTTGCTCTAGGTATGATTGACCATGTTGAAGA
ATTCCTAGAGCGCATTCGAAGAAGAGGTCTCGCTCCAGATCTTGTGACGT
ACAACATTTTGATGCATTCATACGGAACGGCTGGCAACCTGAATCAGGCG
CTAGGCGTTCTTCGTGATATGAAGCAGAATCGTGTTAAGCCAGATCAAAT
TACTTTTAACACGCTTCTTGACTTGCTCTTGAAATCGGGAGAGGTCGACA
AGGTAGAAAGTCTTTTGCAAGAGATGGAACACGATGAAAAGCTAGAGATA
GATGCGGTCGGCAGATGTATTCAACTCAAGGTGTACAGAATTCAGGGAAA
CAAGCAAGCAGCACTCCAAGTGCACAATACTACACAGCGACTGGACAAAC
CCCTTGATGCAAAGGCGTATGGGTTGTTGCTGTCCATTCTCTTCGAGTTT
GATGAACACGAGCAGGCCATTTCTATTTTCGGGTGGTTGGTATGGAAACG
CCAAGCAGCAGGCCCCGTCTACAACGTCATGATAGACAACATCGGAAAGC
GAGAAGACGGATGTGAACAATGCATGAAACTGTTCAATCACATGAAAAGA
AGAGGAATCCCACCCGACAAATTGACGTACACCACAATGATCCGCGTGTT
GTCAAAAAGCGGCCTTATGGATCGAGCCTTCCGCTTGCTCAGTGAGATGC
AAGATATAGGTTTAGCCATGTCCGATATGTACGCCTGGACGAGCTTGATG
GATGGATTCCGAAGGTGTGGGCAATGGCAACGAGCGGTTGAACTGCTGGC
TTTCATGAAGAAGCACAGTTCCAAATCCAAATATTCGCTCGTGCCCAGAC
CGTCGACTGCGTGCTACAACGCGGCTCTATACGCTGCGGGAATAGGAGGT
CAACATTGGAAAACTTGTGTAAAGATTTACAACTCTCTTCTCGCGGACGA
GATCCAACGACCTGATTATATCACGTATTCTGCCATGGCGAGCATCCTTC
TGAGAAGGAGACGCCGCATTTCAGAATGGCACATCGTGAGGCAAGTTTGT
CAAGCCCTTGAAGAATTGCTTCTGGAGGACAACAAACACCGGAACGATGG
TTCGAAAGCAGCGCGTACAAAGAACGGCTCACATCAAAGTTTGAGCAAAC
CCGTGAGAAAGAAGCTCCTGTCAAAACTAAGTGACTTGAAGACATTGATA
GGGCCCGAGATCAACCACTAA back to topCoding sequence (CDS) from alignment at tig00004406_pilon:517363..519783+ >Gchil2792.t1 ID=Gchil2792.t1|Name=Gchil2792.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2421bp|location=Sequence derived from alignment at tig00004406_pilon:517363..519783+ (Gracilaria chilensis NLEC103_M9 male) ATGGAAACGCATTGCCATTGTCGGACGCAGGCTGCCCCATTATTTCTATC TCCCACTGCGCTTCCTCATCAGCAACGGCGTTGGGCCAATTCAAGGTGCC CATCCACAGCTCAGCGTCCCATATTAGCCCATCAAGCACGCCCACGCTTC TCTCCGGATATTCAGCGTGCCGCGGCTCTGAGAAGGGCAGGTAAGCTCGA CAAAGCGCGTGATGTGCTGCACAAGGCTTCCCCTGACACACGCCGCCATC CGGCTTATTATCGAGAGCTGATGTCAATCACTACAGCCCTTGTTGCACAG AGTTCGTCCGCTGCGAAAGCTGAACAGCTCTGGTGTGCCCTTGAGCCACT TCTGTTACAAGATTATTCGCGTCCGGATTCCCTCTCTTTCAATCGTCTTT TAAGCGCATTACGCCTCTTAGACAGTCGGAGGCAGCTCACAAAACGTAAT GAGAATGAAGAGCTACGTATTTTGCTCATAGCGCAGCGCATATTTGATTT CATGCGTGATATATCTGTGCGTCCGGATCAGTTCACAATGTCTATACTGT TTAATATGTGTGCCTATCGCGCTAGCGAGCGCTTTGCTGTTATGTTTGAG CAGCAAGCCACTGATCGTTTTGACTTCAAGCCCAATGTGGTGTCTGGCTC CGCCTTGCTTGCAGCATTTGCAAAGGCGGGTTCTTTGGAGCAACTTGACC GAGTCGTCAATCTCCTTCGAGAGAAACAGGTCCCATTTAATGAACGAAGT TACACATCGATCATTTCTGCACACCTCAAACATGGACAACATGTCAAAGT GCTCCAATACTTTGACCAAGCCATTGCTTGTCCATCCGTCACCCCGAATG TCTTCTTGTTCTCTGGTGTATTGACGTCGTGCCTTCGCGTACGAGATGCC GTTAATGGGCTTCGCGTGTTTGAAGTAATGCAACAAAAAAAAGTGCATCC AACGGAAGCCATACTCAATCTGATGGTAGAGTTAGCTGCCAGAACTGGAA ACATTCCTCTTGGCGTCGAATGTATCACGAAATGGGCTCCCAAGTATGTA ACTGCGAGCGAAGCATTTGATCGCGATAAAATTATTGCTTCATGGAAGAG AAACCCAGCAAACCCGTCTAATGCAATTGATGCATTGCATAAAGTCTTGC AATACATTGAAGGCAAAGGTTATAGCAAAGGCGAGATGTCTACGTATAAT GCAGCTTTGTCGACTCTTGTTGCTCTAGGTATGATTGACCATGTTGAAGA ATTCCTAGAGCGCATTCGAAGAAGAGGTCTCGCTCCAGATCTTGTGACGT ACAACATTTTGATGCATTCATACGGAACGGCTGGCAACCTGAATCAGGCG CTAGGCGTTCTTCGTGATATGAAGCAGAATCGTGTTAAGCCAGATCAAAT TACTTTTAACACGCTTCTTGACTTGCTCTTGAAATCGGGAGAGGTCGACA AGGTAGAAAGTCTTTTGCAAGAGATGGAACACGATGAAAAGCTAGAGATA GATGCGGTCGGCAGATGTATTCAACTCAAGGTGTACAGAATTCAGGGAAA CAAGCAAGCAGCACTCCAAGTGCACAATACTACACAGCGACTGGACAAAC CCCTTGATGCAAAGGCGTATGGGTTGTTGCTGTCCATTCTCTTCGAGTTT GATGAACACGAGCAGGCCATTTCTATTTTCGGGTGGTTGGTATGGAAACG CCAAGCAGCAGGCCCCGTCTACAACGTCATGATAGACAACATCGGAAAGC GAGAAGACGGATGTGAACAATGCATGAAACTGTTCAATCACATGAAAAGA AGAGGAATCCCACCCGACAAATTGACGTACACCACAATGATCCGCGTGTT GTCAAAAAGCGGCCTTATGGATCGAGCCTTCCGCTTGCTCAGTGAGATGC AAGATATAGGTTTAGCCATGTCCGATATGTACGCCTGGACGAGCTTGATG GATGGATTCCGAAGGTGTGGGCAATGGCAACGAGCGGTTGAACTGCTGGC TTTCATGAAGAAGCACAGTTCCAAATCCAAATATTCGCTCGTGCCCAGAC CGTCGACTGCGTGCTACAACGCGGCTCTATACGCTGCGGGAATAGGAGGT CAACATTGGAAAACTTGTGTAAAGATTTACAACTCTCTTCTCGCGGACGA GATCCAACGACCTGATTATATCACGTATTCTGCCATGGCGAGCATCCTTC TGAGAAGGAGACGCCGCATTTCAGAATGGCACATCGTGAGGCAAGTTTGT CAAGCCCTTGAAGAATTGCTTCTGGAGGACAACAAACACCGGAACGATGG TTCGAAAGCAGCGCGTACAAAGAACGGCTCACATCAAAGTTTGAGCAAAC CCGTGAGAAAGAAGCTCCTGTCAAAACTAAGTGACTTGAAGACATTGATA GGGCCCGAGATCAACCACTAA back to top
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