Gchil2792.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2792.t1
Unique NameGchil2792.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length807
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:517363..519783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog102107.XP_008241735.1
PFAMsDYW_deaminase,PPR,PPR_2
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
Evalue4.87e-10
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota,37NMW@33090|Viridiplantae,3G918@35493|Streptophyta,4JDA4@91835|fabids
DescriptionPentatricopeptide repeat-containing protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2792Gchil2792Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 517363..519783 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2792.t1.start1Gchil2792.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 517363..517365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2792.t1.CDS1Gchil2792.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 517363..519783 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2792.t1.exon1Gchil2792.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 517363..519783 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2792.t1.stop1Gchil2792.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 519781..519783 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2792.t1Gchil2792.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 517363..519783 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2792.t1 ID=Gchil2792.t1|Name=Gchil2792.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=807bp
METHCHCRTQAAPLFLSPTALPHQQRRWANSRCPSTAQRPILAHQARPRF
SPDIQRAAALRRAGKLDKARDVLHKASPDTRRHPAYYRELMSITTALVAQ
SSSAAKAEQLWCALEPLLLQDYSRPDSLSFNRLLSALRLLDSRRQLTKRN
ENEELRILLIAQRIFDFMRDISVRPDQFTMSILFNMCAYRASERFAVMFE
QQATDRFDFKPNVVSGSALLAAFAKAGSLEQLDRVVNLLREKQVPFNERS
YTSIISAHLKHGQHVKVLQYFDQAIACPSVTPNVFLFSGVLTSCLRVRDA
VNGLRVFEVMQQKKVHPTEAILNLMVELAARTGNIPLGVECITKWAPKYV
TASEAFDRDKIIASWKRNPANPSNAIDALHKVLQYIEGKGYSKGEMSTYN
AALSTLVALGMIDHVEEFLERIRRRGLAPDLVTYNILMHSYGTAGNLNQA
LGVLRDMKQNRVKPDQITFNTLLDLLLKSGEVDKVESLLQEMEHDEKLEI
DAVGRCIQLKVYRIQGNKQAALQVHNTTQRLDKPLDAKAYGLLLSILFEF
DEHEQAISIFGWLVWKRQAAGPVYNVMIDNIGKREDGCEQCMKLFNHMKR
RGIPPDKLTYTTMIRVLSKSGLMDRAFRLLSEMQDIGLAMSDMYAWTSLM
DGFRRCGQWQRAVELLAFMKKHSSKSKYSLVPRPSTACYNAALYAAGIGG
QHWKTCVKIYNSLLADEIQRPDYITYSAMASILLRRRRRISEWHIVRQVC
QALEELLLEDNKHRNDGSKAARTKNGSHQSLSKPVRKKLLSKLSDLKTLI
GPEINH*
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spliced messenger RNA

>Gchil2792.t1 ID=Gchil2792.t1|Name=Gchil2792.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2421bp|location=Sequence derived from alignment at tig00004406_pilon:517363..519783+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAACGCATTGCCATTGTCGGACGCAGGCTGCCCCATTATTTCTATC
TCCCACTGCGCTTCCTCATCAGCAACGGCGTTGGGCCAATTCAAGGTGCC
CATCCACAGCTCAGCGTCCCATATTAGCCCATCAAGCACGCCCACGCTTC
TCTCCGGATATTCAGCGTGCCGCGGCTCTGAGAAGGGCAGGTAAGCTCGA
CAAAGCGCGTGATGTGCTGCACAAGGCTTCCCCTGACACACGCCGCCATC
CGGCTTATTATCGAGAGCTGATGTCAATCACTACAGCCCTTGTTGCACAG
AGTTCGTCCGCTGCGAAAGCTGAACAGCTCTGGTGTGCCCTTGAGCCACT
TCTGTTACAAGATTATTCGCGTCCGGATTCCCTCTCTTTCAATCGTCTTT
TAAGCGCATTACGCCTCTTAGACAGTCGGAGGCAGCTCACAAAACGTAAT
GAGAATGAAGAGCTACGTATTTTGCTCATAGCGCAGCGCATATTTGATTT
CATGCGTGATATATCTGTGCGTCCGGATCAGTTCACAATGTCTATACTGT
TTAATATGTGTGCCTATCGCGCTAGCGAGCGCTTTGCTGTTATGTTTGAG
CAGCAAGCCACTGATCGTTTTGACTTCAAGCCCAATGTGGTGTCTGGCTC
CGCCTTGCTTGCAGCATTTGCAAAGGCGGGTTCTTTGGAGCAACTTGACC
GAGTCGTCAATCTCCTTCGAGAGAAACAGGTCCCATTTAATGAACGAAGT
TACACATCGATCATTTCTGCACACCTCAAACATGGACAACATGTCAAAGT
GCTCCAATACTTTGACCAAGCCATTGCTTGTCCATCCGTCACCCCGAATG
TCTTCTTGTTCTCTGGTGTATTGACGTCGTGCCTTCGCGTACGAGATGCC
GTTAATGGGCTTCGCGTGTTTGAAGTAATGCAACAAAAAAAAGTGCATCC
AACGGAAGCCATACTCAATCTGATGGTAGAGTTAGCTGCCAGAACTGGAA
ACATTCCTCTTGGCGTCGAATGTATCACGAAATGGGCTCCCAAGTATGTA
ACTGCGAGCGAAGCATTTGATCGCGATAAAATTATTGCTTCATGGAAGAG
AAACCCAGCAAACCCGTCTAATGCAATTGATGCATTGCATAAAGTCTTGC
AATACATTGAAGGCAAAGGTTATAGCAAAGGCGAGATGTCTACGTATAAT
GCAGCTTTGTCGACTCTTGTTGCTCTAGGTATGATTGACCATGTTGAAGA
ATTCCTAGAGCGCATTCGAAGAAGAGGTCTCGCTCCAGATCTTGTGACGT
ACAACATTTTGATGCATTCATACGGAACGGCTGGCAACCTGAATCAGGCG
CTAGGCGTTCTTCGTGATATGAAGCAGAATCGTGTTAAGCCAGATCAAAT
TACTTTTAACACGCTTCTTGACTTGCTCTTGAAATCGGGAGAGGTCGACA
AGGTAGAAAGTCTTTTGCAAGAGATGGAACACGATGAAAAGCTAGAGATA
GATGCGGTCGGCAGATGTATTCAACTCAAGGTGTACAGAATTCAGGGAAA
CAAGCAAGCAGCACTCCAAGTGCACAATACTACACAGCGACTGGACAAAC
CCCTTGATGCAAAGGCGTATGGGTTGTTGCTGTCCATTCTCTTCGAGTTT
GATGAACACGAGCAGGCCATTTCTATTTTCGGGTGGTTGGTATGGAAACG
CCAAGCAGCAGGCCCCGTCTACAACGTCATGATAGACAACATCGGAAAGC
GAGAAGACGGATGTGAACAATGCATGAAACTGTTCAATCACATGAAAAGA
AGAGGAATCCCACCCGACAAATTGACGTACACCACAATGATCCGCGTGTT
GTCAAAAAGCGGCCTTATGGATCGAGCCTTCCGCTTGCTCAGTGAGATGC
AAGATATAGGTTTAGCCATGTCCGATATGTACGCCTGGACGAGCTTGATG
GATGGATTCCGAAGGTGTGGGCAATGGCAACGAGCGGTTGAACTGCTGGC
TTTCATGAAGAAGCACAGTTCCAAATCCAAATATTCGCTCGTGCCCAGAC
CGTCGACTGCGTGCTACAACGCGGCTCTATACGCTGCGGGAATAGGAGGT
CAACATTGGAAAACTTGTGTAAAGATTTACAACTCTCTTCTCGCGGACGA
GATCCAACGACCTGATTATATCACGTATTCTGCCATGGCGAGCATCCTTC
TGAGAAGGAGACGCCGCATTTCAGAATGGCACATCGTGAGGCAAGTTTGT
CAAGCCCTTGAAGAATTGCTTCTGGAGGACAACAAACACCGGAACGATGG
TTCGAAAGCAGCGCGTACAAAGAACGGCTCACATCAAAGTTTGAGCAAAC
CCGTGAGAAAGAAGCTCCTGTCAAAACTAAGTGACTTGAAGACATTGATA
GGGCCCGAGATCAACCACTAA
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protein sequence of Gchil2792.t1

>Gchil2792.t1 ID=Gchil2792.t1|Name=Gchil2792.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=807bp
METHCHCRTQAAPLFLSPTALPHQQRRWANSRCPSTAQRPILAHQARPRF
SPDIQRAAALRRAGKLDKARDVLHKASPDTRRHPAYYRELMSITTALVAQ
SSSAAKAEQLWCALEPLLLQDYSRPDSLSFNRLLSALRLLDSRRQLTKRN
ENEELRILLIAQRIFDFMRDISVRPDQFTMSILFNMCAYRASERFAVMFE
QQATDRFDFKPNVVSGSALLAAFAKAGSLEQLDRVVNLLREKQVPFNERS
YTSIISAHLKHGQHVKVLQYFDQAIACPSVTPNVFLFSGVLTSCLRVRDA
VNGLRVFEVMQQKKVHPTEAILNLMVELAARTGNIPLGVECITKWAPKYV
TASEAFDRDKIIASWKRNPANPSNAIDALHKVLQYIEGKGYSKGEMSTYN
AALSTLVALGMIDHVEEFLERIRRRGLAPDLVTYNILMHSYGTAGNLNQA
LGVLRDMKQNRVKPDQITFNTLLDLLLKSGEVDKVESLLQEMEHDEKLEI
DAVGRCIQLKVYRIQGNKQAALQVHNTTQRLDKPLDAKAYGLLLSILFEF
DEHEQAISIFGWLVWKRQAAGPVYNVMIDNIGKREDGCEQCMKLFNHMKR
RGIPPDKLTYTTMIRVLSKSGLMDRAFRLLSEMQDIGLAMSDMYAWTSLM
DGFRRCGQWQRAVELLAFMKKHSSKSKYSLVPRPSTACYNAALYAAGIGG
QHWKTCVKIYNSLLADEIQRPDYITYSAMASILLRRRRRISEWHIVRQVC
QALEELLLEDNKHRNDGSKAARTKNGSHQSLSKPVRKKLLSKLSDLKTLI
GPEINH*
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mRNA from alignment at tig00004406_pilon:517363..519783+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2792.t1 ID=Gchil2792.t1|Name=Gchil2792.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2421bp|location=Sequence derived from alignment at tig00004406_pilon:517363..519783+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAACGCATTGCCATTGTCGGACGCAGGCTGCCCCATTATTTCTATC TCCCACTGCGCTTCCTCATCAGCAACGGCGTTGGGCCAATTCAAGGTGCC CATCCACAGCTCAGCGTCCCATATTAGCCCATCAAGCACGCCCACGCTTC TCTCCGGATATTCAGCGTGCCGCGGCTCTGAGAAGGGCAGGTAAGCTCGA CAAAGCGCGTGATGTGCTGCACAAGGCTTCCCCTGACACACGCCGCCATC CGGCTTATTATCGAGAGCTGATGTCAATCACTACAGCCCTTGTTGCACAG AGTTCGTCCGCTGCGAAAGCTGAACAGCTCTGGTGTGCCCTTGAGCCACT TCTGTTACAAGATTATTCGCGTCCGGATTCCCTCTCTTTCAATCGTCTTT TAAGCGCATTACGCCTCTTAGACAGTCGGAGGCAGCTCACAAAACGTAAT GAGAATGAAGAGCTACGTATTTTGCTCATAGCGCAGCGCATATTTGATTT CATGCGTGATATATCTGTGCGTCCGGATCAGTTCACAATGTCTATACTGT TTAATATGTGTGCCTATCGCGCTAGCGAGCGCTTTGCTGTTATGTTTGAG CAGCAAGCCACTGATCGTTTTGACTTCAAGCCCAATGTGGTGTCTGGCTC CGCCTTGCTTGCAGCATTTGCAAAGGCGGGTTCTTTGGAGCAACTTGACC GAGTCGTCAATCTCCTTCGAGAGAAACAGGTCCCATTTAATGAACGAAGT TACACATCGATCATTTCTGCACACCTCAAACATGGACAACATGTCAAAGT GCTCCAATACTTTGACCAAGCCATTGCTTGTCCATCCGTCACCCCGAATG TCTTCTTGTTCTCTGGTGTATTGACGTCGTGCCTTCGCGTACGAGATGCC GTTAATGGGCTTCGCGTGTTTGAAGTAATGCAACAAAAAAAAGTGCATCC AACGGAAGCCATACTCAATCTGATGGTAGAGTTAGCTGCCAGAACTGGAA ACATTCCTCTTGGCGTCGAATGTATCACGAAATGGGCTCCCAAGTATGTA ACTGCGAGCGAAGCATTTGATCGCGATAAAATTATTGCTTCATGGAAGAG AAACCCAGCAAACCCGTCTAATGCAATTGATGCATTGCATAAAGTCTTGC AATACATTGAAGGCAAAGGTTATAGCAAAGGCGAGATGTCTACGTATAAT GCAGCTTTGTCGACTCTTGTTGCTCTAGGTATGATTGACCATGTTGAAGA ATTCCTAGAGCGCATTCGAAGAAGAGGTCTCGCTCCAGATCTTGTGACGT ACAACATTTTGATGCATTCATACGGAACGGCTGGCAACCTGAATCAGGCG CTAGGCGTTCTTCGTGATATGAAGCAGAATCGTGTTAAGCCAGATCAAAT TACTTTTAACACGCTTCTTGACTTGCTCTTGAAATCGGGAGAGGTCGACA AGGTAGAAAGTCTTTTGCAAGAGATGGAACACGATGAAAAGCTAGAGATA GATGCGGTCGGCAGATGTATTCAACTCAAGGTGTACAGAATTCAGGGAAA CAAGCAAGCAGCACTCCAAGTGCACAATACTACACAGCGACTGGACAAAC CCCTTGATGCAAAGGCGTATGGGTTGTTGCTGTCCATTCTCTTCGAGTTT GATGAACACGAGCAGGCCATTTCTATTTTCGGGTGGTTGGTATGGAAACG CCAAGCAGCAGGCCCCGTCTACAACGTCATGATAGACAACATCGGAAAGC GAGAAGACGGATGTGAACAATGCATGAAACTGTTCAATCACATGAAAAGA AGAGGAATCCCACCCGACAAATTGACGTACACCACAATGATCCGCGTGTT GTCAAAAAGCGGCCTTATGGATCGAGCCTTCCGCTTGCTCAGTGAGATGC AAGATATAGGTTTAGCCATGTCCGATATGTACGCCTGGACGAGCTTGATG GATGGATTCCGAAGGTGTGGGCAATGGCAACGAGCGGTTGAACTGCTGGC TTTCATGAAGAAGCACAGTTCCAAATCCAAATATTCGCTCGTGCCCAGAC CGTCGACTGCGTGCTACAACGCGGCTCTATACGCTGCGGGAATAGGAGGT CAACATTGGAAAACTTGTGTAAAGATTTACAACTCTCTTCTCGCGGACGA GATCCAACGACCTGATTATATCACGTATTCTGCCATGGCGAGCATCCTTC TGAGAAGGAGACGCCGCATTTCAGAATGGCACATCGTGAGGCAAGTTTGT CAAGCCCTTGAAGAATTGCTTCTGGAGGACAACAAACACCGGAACGATGG TTCGAAAGCAGCGCGTACAAAGAACGGCTCACATCAAAGTTTGAGCAAAC CCGTGAGAAAGAAGCTCCTGTCAAAACTAAGTGACTTGAAGACATTGATA GGGCCCGAGATCAACCACTAA
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Coding sequence (CDS) from alignment at tig00004406_pilon:517363..519783+

>Gchil2792.t1 ID=Gchil2792.t1|Name=Gchil2792.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2421bp|location=Sequence derived from alignment at tig00004406_pilon:517363..519783+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAACGCATTGCCATTGTCGGACGCAGGCTGCCCCATTATTTCTATC
TCCCACTGCGCTTCCTCATCAGCAACGGCGTTGGGCCAATTCAAGGTGCC
CATCCACAGCTCAGCGTCCCATATTAGCCCATCAAGCACGCCCACGCTTC
TCTCCGGATATTCAGCGTGCCGCGGCTCTGAGAAGGGCAGGTAAGCTCGA
CAAAGCGCGTGATGTGCTGCACAAGGCTTCCCCTGACACACGCCGCCATC
CGGCTTATTATCGAGAGCTGATGTCAATCACTACAGCCCTTGTTGCACAG
AGTTCGTCCGCTGCGAAAGCTGAACAGCTCTGGTGTGCCCTTGAGCCACT
TCTGTTACAAGATTATTCGCGTCCGGATTCCCTCTCTTTCAATCGTCTTT
TAAGCGCATTACGCCTCTTAGACAGTCGGAGGCAGCTCACAAAACGTAAT
GAGAATGAAGAGCTACGTATTTTGCTCATAGCGCAGCGCATATTTGATTT
CATGCGTGATATATCTGTGCGTCCGGATCAGTTCACAATGTCTATACTGT
TTAATATGTGTGCCTATCGCGCTAGCGAGCGCTTTGCTGTTATGTTTGAG
CAGCAAGCCACTGATCGTTTTGACTTCAAGCCCAATGTGGTGTCTGGCTC
CGCCTTGCTTGCAGCATTTGCAAAGGCGGGTTCTTTGGAGCAACTTGACC
GAGTCGTCAATCTCCTTCGAGAGAAACAGGTCCCATTTAATGAACGAAGT
TACACATCGATCATTTCTGCACACCTCAAACATGGACAACATGTCAAAGT
GCTCCAATACTTTGACCAAGCCATTGCTTGTCCATCCGTCACCCCGAATG
TCTTCTTGTTCTCTGGTGTATTGACGTCGTGCCTTCGCGTACGAGATGCC
GTTAATGGGCTTCGCGTGTTTGAAGTAATGCAACAAAAAAAAGTGCATCC
AACGGAAGCCATACTCAATCTGATGGTAGAGTTAGCTGCCAGAACTGGAA
ACATTCCTCTTGGCGTCGAATGTATCACGAAATGGGCTCCCAAGTATGTA
ACTGCGAGCGAAGCATTTGATCGCGATAAAATTATTGCTTCATGGAAGAG
AAACCCAGCAAACCCGTCTAATGCAATTGATGCATTGCATAAAGTCTTGC
AATACATTGAAGGCAAAGGTTATAGCAAAGGCGAGATGTCTACGTATAAT
GCAGCTTTGTCGACTCTTGTTGCTCTAGGTATGATTGACCATGTTGAAGA
ATTCCTAGAGCGCATTCGAAGAAGAGGTCTCGCTCCAGATCTTGTGACGT
ACAACATTTTGATGCATTCATACGGAACGGCTGGCAACCTGAATCAGGCG
CTAGGCGTTCTTCGTGATATGAAGCAGAATCGTGTTAAGCCAGATCAAAT
TACTTTTAACACGCTTCTTGACTTGCTCTTGAAATCGGGAGAGGTCGACA
AGGTAGAAAGTCTTTTGCAAGAGATGGAACACGATGAAAAGCTAGAGATA
GATGCGGTCGGCAGATGTATTCAACTCAAGGTGTACAGAATTCAGGGAAA
CAAGCAAGCAGCACTCCAAGTGCACAATACTACACAGCGACTGGACAAAC
CCCTTGATGCAAAGGCGTATGGGTTGTTGCTGTCCATTCTCTTCGAGTTT
GATGAACACGAGCAGGCCATTTCTATTTTCGGGTGGTTGGTATGGAAACG
CCAAGCAGCAGGCCCCGTCTACAACGTCATGATAGACAACATCGGAAAGC
GAGAAGACGGATGTGAACAATGCATGAAACTGTTCAATCACATGAAAAGA
AGAGGAATCCCACCCGACAAATTGACGTACACCACAATGATCCGCGTGTT
GTCAAAAAGCGGCCTTATGGATCGAGCCTTCCGCTTGCTCAGTGAGATGC
AAGATATAGGTTTAGCCATGTCCGATATGTACGCCTGGACGAGCTTGATG
GATGGATTCCGAAGGTGTGGGCAATGGCAACGAGCGGTTGAACTGCTGGC
TTTCATGAAGAAGCACAGTTCCAAATCCAAATATTCGCTCGTGCCCAGAC
CGTCGACTGCGTGCTACAACGCGGCTCTATACGCTGCGGGAATAGGAGGT
CAACATTGGAAAACTTGTGTAAAGATTTACAACTCTCTTCTCGCGGACGA
GATCCAACGACCTGATTATATCACGTATTCTGCCATGGCGAGCATCCTTC
TGAGAAGGAGACGCCGCATTTCAGAATGGCACATCGTGAGGCAAGTTTGT
CAAGCCCTTGAAGAATTGCTTCTGGAGGACAACAAACACCGGAACGATGG
TTCGAAAGCAGCGCGTACAAAGAACGGCTCACATCAAAGTTTGAGCAAAC
CCGTGAGAAAGAAGCTCCTGTCAAAACTAAGTGACTTGAAGACATTGATA
GGGCCCGAGATCAACCACTAA
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