Gchil2875.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2875.t1
Unique NameGchil2875.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length499
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:1042777..1044273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4432.XP_010263111.1
Max annot lvl35493|Streptophyta
KEGG koko:K22422
Evalue1.39e-09
EggNOG OGsCOG4646@1|root,2QV9V@2759|Eukaryota,37QMD@33090|Viridiplantae,3GF7I@35493|Streptophyta
DescriptionProtein downstream neighbor of
COG categoryKL
BRITEko00000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2875Gchil2875Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 1042777..1044273 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2875.t1.stop1Gchil2875.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 1042777..1042779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2875.t1.CDS1Gchil2875.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 1042777..1044273 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2875.t1.exon1Gchil2875.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 1042777..1044273 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2875.t1.start1Gchil2875.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 1044271..1044273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2875.t1Gchil2875.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 1042777..1044273 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2875.t1 ID=Gchil2875.t1|Name=Gchil2875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=499bp
MPPPRKRPRTQSISAKRPPAAPRLSRSHPSAADDNSRPRTLIDLLGPNSS
RAEQVLGDDAPNDAWSVLANTVDNLTSHSGQPVPRAAPHADDTHPTNAAE
VQETPHEQLPMDLSIKTSLSIMSSKSLWWTRVRGQGEEYEALHDLLSGVD
TITEAPVIKPPLGSDAVIEGQVLTDTLTCAKRQFYRALLHFRYPCTTLPP
VISRRWQTVFAASTRARPDSALQEAANVALERLRLWQSALQSLFFGYKRG
HIDHFYILLPSTTLLFSHTFPQNDSLNIRNGTNCQKRRGQMCSTSDSSLQ
ACFANGSLGLRSLLSDYAVPFRLERDSNSSVGDSEPPVIAQGQLAVQAVY
NFVLSVGHKISNATDVPVLLCDKPFRGGTAITAQVADADEANIINSSGGA
TRLRYSVKITGFLTPRQVRAICKALVETQDRDFSVQMSTEARSEMLNVCG
QSISLLPASGTSSSQQKSYHSILGRRVLSRVTRKTTSPNFMLFTRAVE*
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spliced messenger RNA

>Gchil2875.t1 ID=Gchil2875.t1|Name=Gchil2875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at tig00004406_pilon:1042777..1044273- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACCGCCTCGAAAACGACCGCGCACGCAATCTATAAGCGCAAAACG
ACCCCCGGCAGCCCCACGTCTCTCCCGTTCACACCCGTCTGCGGCCGACG
ATAATTCGCGTCCACGCACCTTGATTGATCTTTTAGGCCCCAATTCTTCT
CGTGCAGAACAGGTGCTGGGCGATGATGCCCCGAACGATGCTTGGTCCGT
GCTAGCCAACACTGTTGATAACTTAACTTCACATTCAGGACAACCCGTTC
CTCGGGCAGCTCCCCATGCCGATGATACGCATCCAACTAATGCTGCCGAA
GTACAAGAAACTCCACATGAACAGCTTCCGATGGACCTGTCCATCAAAAC
TTCGCTCAGCATCATGTCATCCAAATCGTTGTGGTGGACGCGAGTAAGAG
GCCAGGGTGAGGAGTACGAAGCGCTGCATGATTTACTTTCAGGCGTCGAT
ACCATCACAGAAGCGCCTGTTATCAAACCCCCGCTTGGCAGCGACGCTGT
AATAGAAGGACAAGTACTAACTGACACCTTAACGTGTGCCAAACGTCAAT
TCTATCGTGCCTTGCTCCACTTTCGCTATCCATGCACTACACTACCTCCG
GTTATCTCCAGAAGGTGGCAAACCGTGTTTGCCGCCAGCACGCGAGCACG
ACCAGATTCAGCTTTACAAGAAGCAGCTAATGTGGCCTTGGAACGCTTAC
GTCTGTGGCAAAGCGCGCTTCAGTCCTTGTTTTTCGGATACAAGCGTGGC
CATATTGATCATTTCTACATTTTGCTCCCATCTACTACTCTTCTATTCAG
TCATACTTTTCCTCAGAACGACAGCCTCAATATTAGAAATGGAACCAACT
GTCAGAAGCGACGAGGACAAATGTGTTCGACAAGCGACTCATCATTGCAA
GCCTGTTTTGCAAATGGTTCCTTAGGGCTGCGCTCATTGCTGTCAGACTA
CGCAGTGCCGTTTAGACTTGAACGAGATTCAAACTCATCGGTAGGAGACA
GTGAGCCTCCCGTGATAGCTCAAGGCCAGCTAGCAGTGCAAGCTGTATAT
AATTTTGTCTTAAGTGTAGGCCATAAGATTTCGAACGCCACAGATGTTCC
CGTGTTATTATGTGACAAGCCCTTTCGAGGTGGTACCGCCATCACCGCTC
AAGTTGCAGATGCAGATGAAGCCAATATAATTAATTCATCCGGTGGGGCC
ACGAGATTAAGATACTCCGTCAAGATCACCGGCTTTCTCACTCCACGCCA
AGTACGCGCTATTTGTAAGGCGTTGGTTGAAACTCAAGATCGGGATTTCT
CGGTTCAAATGAGCACTGAAGCAAGGTCGGAAATGTTGAATGTGTGCGGG
CAGTCAATTAGCTTATTGCCGGCGAGTGGGACATCCTCTTCTCAGCAGAA
ATCATATCACTCTATACTTGGACGTCGAGTCTTATCACGAGTCACAAGGA
AGACAACTTCTCCCAACTTTATGCTGTTTACTCGAGCTGTGGAATAA
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protein sequence of Gchil2875.t1

>Gchil2875.t1 ID=Gchil2875.t1|Name=Gchil2875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=499bp
MPPPRKRPRTQSISAKRPPAAPRLSRSHPSAADDNSRPRTLIDLLGPNSS
RAEQVLGDDAPNDAWSVLANTVDNLTSHSGQPVPRAAPHADDTHPTNAAE
VQETPHEQLPMDLSIKTSLSIMSSKSLWWTRVRGQGEEYEALHDLLSGVD
TITEAPVIKPPLGSDAVIEGQVLTDTLTCAKRQFYRALLHFRYPCTTLPP
VISRRWQTVFAASTRARPDSALQEAANVALERLRLWQSALQSLFFGYKRG
HIDHFYILLPSTTLLFSHTFPQNDSLNIRNGTNCQKRRGQMCSTSDSSLQ
ACFANGSLGLRSLLSDYAVPFRLERDSNSSVGDSEPPVIAQGQLAVQAVY
NFVLSVGHKISNATDVPVLLCDKPFRGGTAITAQVADADEANIINSSGGA
TRLRYSVKITGFLTPRQVRAICKALVETQDRDFSVQMSTEARSEMLNVCG
QSISLLPASGTSSSQQKSYHSILGRRVLSRVTRKTTSPNFMLFTRAVE*
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mRNA from alignment at tig00004406_pilon:1042777..1044273-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2875.t1 ID=Gchil2875.t1|Name=Gchil2875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at tig00004406_pilon:1042777..1044273- (Gracilaria chilensis NLEC103_M9 male)
ATGCCACCGCCTCGAAAACGACCGCGCACGCAATCTATAAGCGCAAAACG
ACCCCCGGCAGCCCCACGTCTCTCCCGTTCACACCCGTCTGCGGCCGACG
ATAATTCGCGTCCACGCACCTTGATTGATCTTTTAGGCCCCAATTCTTCT
CGTGCAGAACAGGTGCTGGGCGATGATGCCCCGAACGATGCTTGGTCCGT
GCTAGCCAACACTGTTGATAACTTAACTTCACATTCAGGACAACCCGTTC
CTCGGGCAGCTCCCCATGCCGATGATACGCATCCAACTAATGCTGCCGAA
GTACAAGAAACTCCACATGAACAGCTTCCGATGGACCTGTCCATCAAAAC
TTCGCTCAGCATCATGTCATCCAAATCGTTGTGGTGGACGCGAGTAAGAG
GCCAGGGTGAGGAGTACGAAGCGCTGCATGATTTACTTTCAGGCGTCGAT
ACCATCACAGAAGCGCCTGTTATCAAACCCCCGCTTGGCAGCGACGCTGT
AATAGAAGGACAAGTACTAACTGACACCTTAACGTGTGCCAAACGTCAAT
TCTATCGTGCCTTGCTCCACTTTCGCTATCCATGCACTACACTACCTCCG
GTTATCTCCAGAAGGTGGCAAACCGTGTTTGCCGCCAGCACGCGAGCACG
ACCAGATTCAGCTTTACAAGAAGCAGCTAATGTGGCCTTGGAACGCTTAC
GTCTGTGGCAAAGCGCGCTTCAGTCCTTGTTTTTCGGATACAAGCGTGGC
CATATTGATCATTTCTACATTTTGCTCCCATCTACTACTCTTCTATTCAG
TCATACTTTTCCTCAGAACGACAGCCTCAATATTAGAAATGGAACCAACT
GTCAGAAGCGACGAGGACAAATGTGTTCGACAAGCGACTCATCATTGCAA
GCCTGTTTTGCAAATGGTTCCTTAGGGCTGCGCTCATTGCTGTCAGACTA
CGCAGTGCCGTTTAGACTTGAACGAGATTCAAACTCATCGGTAGGAGACA
GTGAGCCTCCCGTGATAGCTCAAGGCCAGCTAGCAGTGCAAGCTGTATAT
AATTTTGTCTTAAGTGTAGGCCATAAGATTTCGAACGCCACAGATGTTCC
CGTGTTATTATGTGACAAGCCCTTTCGAGGTGGTACCGCCATCACCGCTC
AAGTTGCAGATGCAGATGAAGCCAATATAATTAATTCATCCGGTGGGGCC
ACGAGATTAAGATACTCCGTCAAGATCACCGGCTTTCTCACTCCACGCCA
AGTACGCGCTATTTGTAAGGCGTTGGTTGAAACTCAAGATCGGGATTTCT
CGGTTCAAATGAGCACTGAAGCAAGGTCGGAAATGTTGAATGTGTGCGGG
CAGTCAATTAGCTTATTGCCGGCGAGTGGGACATCCTCTTCTCAGCAGAA
ATCATATCACTCTATACTTGGACGTCGAGTCTTATCACGAGTCACAAGGA
AGACAACTTCTCCCAACTTTATGCTGTTTACTCGAGCTGTGGAATAA
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Coding sequence (CDS) from alignment at tig00004406_pilon:1042777..1044273-

>Gchil2875.t1 ID=Gchil2875.t1|Name=Gchil2875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1497bp|location=Sequence derived from alignment at tig00004406_pilon:1042777..1044273- (Gracilaria chilensis NLEC103_M9 male)
ATGCCACCGCCTCGAAAACGACCGCGCACGCAATCTATAAGCGCAAAACG
ACCCCCGGCAGCCCCACGTCTCTCCCGTTCACACCCGTCTGCGGCCGACG
ATAATTCGCGTCCACGCACCTTGATTGATCTTTTAGGCCCCAATTCTTCT
CGTGCAGAACAGGTGCTGGGCGATGATGCCCCGAACGATGCTTGGTCCGT
GCTAGCCAACACTGTTGATAACTTAACTTCACATTCAGGACAACCCGTTC
CTCGGGCAGCTCCCCATGCCGATGATACGCATCCAACTAATGCTGCCGAA
GTACAAGAAACTCCACATGAACAGCTTCCGATGGACCTGTCCATCAAAAC
TTCGCTCAGCATCATGTCATCCAAATCGTTGTGGTGGACGCGAGTAAGAG
GCCAGGGTGAGGAGTACGAAGCGCTGCATGATTTACTTTCAGGCGTCGAT
ACCATCACAGAAGCGCCTGTTATCAAACCCCCGCTTGGCAGCGACGCTGT
AATAGAAGGACAAGTACTAACTGACACCTTAACGTGTGCCAAACGTCAAT
TCTATCGTGCCTTGCTCCACTTTCGCTATCCATGCACTACACTACCTCCG
GTTATCTCCAGAAGGTGGCAAACCGTGTTTGCCGCCAGCACGCGAGCACG
ACCAGATTCAGCTTTACAAGAAGCAGCTAATGTGGCCTTGGAACGCTTAC
GTCTGTGGCAAAGCGCGCTTCAGTCCTTGTTTTTCGGATACAAGCGTGGC
CATATTGATCATTTCTACATTTTGCTCCCATCTACTACTCTTCTATTCAG
TCATACTTTTCCTCAGAACGACAGCCTCAATATTAGAAATGGAACCAACT
GTCAGAAGCGACGAGGACAAATGTGTTCGACAAGCGACTCATCATTGCAA
GCCTGTTTTGCAAATGGTTCCTTAGGGCTGCGCTCATTGCTGTCAGACTA
CGCAGTGCCGTTTAGACTTGAACGAGATTCAAACTCATCGGTAGGAGACA
GTGAGCCTCCCGTGATAGCTCAAGGCCAGCTAGCAGTGCAAGCTGTATAT
AATTTTGTCTTAAGTGTAGGCCATAAGATTTCGAACGCCACAGATGTTCC
CGTGTTATTATGTGACAAGCCCTTTCGAGGTGGTACCGCCATCACCGCTC
AAGTTGCAGATGCAGATGAAGCCAATATAATTAATTCATCCGGTGGGGCC
ACGAGATTAAGATACTCCGTCAAGATCACCGGCTTTCTCACTCCACGCCA
AGTACGCGCTATTTGTAAGGCGTTGGTTGAAACTCAAGATCGGGATTTCT
CGGTTCAAATGAGCACTGAAGCAAGGTCGGAAATGTTGAATGTGTGCGGG
CAGTCAATTAGCTTATTGCCGGCGAGTGGGACATCCTCTTCTCAGCAGAA
ATCATATCACTCTATACTTGGACGTCGAGTCTTATCACGAGTCACAAGGA
AGACAACTTCTCCCAACTTTATGCTGTTTACTCGAGCTGTGGAATAA
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