Gchil2858.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2858.t1
Unique NameGchil2858.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length535
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:927585..929398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704645.1
Preferred nameSURF1
PFAMsSURF1
Max annot lvl2759|Eukaryota
KEGG koko:K14724,ko:K14998
KEGG TC2.A.36.1.12,2.A.36.1.9,3.D.4.8
GOsGO:0002164,GO:0002165,GO:0002168,GO:0003674,GO:0003824,GO:0004129,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006996,GO:0007005,GO:0007275,GO:0007610,GO:0007632,GO:0008150,GO:0008152,GO:0008324,GO:0008535,GO:0009055,GO:0009058,GO:0009060,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009791,GO:0009987,GO:0015002,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015672,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016310,GO:0016491,GO:0016675,GO:0016676,GO:0017004,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022857,GO:0022890,GO:0022900,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0033108,GO:0033617,GO:0034220,GO:0034622,GO:0034641,GO:0034654,GO:0040011,GO:0042330,GO:0042331,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045333,GO:0046034,GO:0046390,GO:0046483,GO:0048856,GO:0050896,GO:0051082,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0055114,GO:0065003,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600
Evalue1.19e-42
EggNOG OGsCOG3346@1|root,KOG1563@2759|Eukaryota
DescriptionProbably involved in the biogenesis of the COX complex
COG categoryU
BRITEko00000,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2858Gchil2858Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 927585..929398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2858.t1Gchil2858.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 927585..929398 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2858.t1.start1Gchil2858.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 927585..927587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2858.t1.CDS1Gchil2858.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 927585..927825 +
Gchil2858.t1.CDS2Gchil2858.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 927913..928393 +
Gchil2858.t1.CDS3Gchil2858.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 928516..929398 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2858.t1.exon1Gchil2858.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 927585..927825 +
Gchil2858.t1.exon2Gchil2858.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 927913..928393 +
Gchil2858.t1.exon3Gchil2858.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 928516..929398 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2858.t1.intron1Gchil2858.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 927826..927912 +
Gchil2858.t1.intron2Gchil2858.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 928394..928515 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2858.t1.stop1Gchil2858.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 929396..929398 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2858.t1 ID=Gchil2858.t1|Name=Gchil2858.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=535bp
MRNGAPITGFLPCAAGGFGRALFQSGHRWRNGRNETRSQTRCTLSAQRSC
ARRCQALTVEACRLDGFSSDFVRELRRLVRSPWFISRVRDRIEWPYFRFS
GVLFVRREIGYTDEHDEDDEHDEHDEHEDGGDGIPGAVRQLARRADMKLV
DIPPLVVQHAATSSKQPLRSGVQRIVAVFETYGHCSGALPEMQNRRVQFE
NDLLKQRRAWADHRDIRRNETVIMGLHGADPFDDHYLDYYLRLSTQTTPA
APDASRAAQPHSRSRSRASRSSSILFGVPIALTFSLGVWQLYRLRRKHTL
IVERQLRLSSAPIDTASLFQHADTDHRRIQLTGRFLHEHEMLVGPRSAPK
HTPMPVLQWGGSTGLQVITPLKTDDGSIVLVNRGWIPQRLSARSRRHNPQ
LSPYSFITKFDRHATYCDYHDSSVLSPQVSFVGVVRSTDERNRFTPKNAP
SKDEWFYVDANAMLHAHGLEGCERLVELVEPHPQAGWPFPRSLESYAEFR
TPPSTHITYAVTWFSLSACIALLTRFRARQKRTF*
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spliced messenger RNA

>Gchil2858.t1 ID=Gchil2858.t1|Name=Gchil2858.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1605bp|location=Sequence derived from alignment at tig00004406_pilon:927585..929398+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAACGGCGCTCCGATCACGGGCTTTCTGCCGTGTGCGGCGGGCGG
GTTCGGGCGTGCGTTGTTCCAGAGTGGGCATCGTTGGCGCAATGGACGCA
ATGAGACGAGAAGCCAAACGCGATGCACGCTGAGCGCGCAGCGCAGTTGC
GCCCGTCGGTGCCAGGCACTTACGGTGGAGGCGTGCAGGCTGGATGGCTT
TTCTAGCGACTTTGTTCGTGAACTGCGCCGACTGGTTCGATCACCTTGGT
TTATTTCGCGAGTGCGGGACCGCATCGAATGGCCTTACTTTCGGTTCAGC
GGGGTGCTGTTCGTGCGCCGAGAGATAGGGTACACGgacgagcacgacga
agacgacgagcacgacgagcacgacgagcacgaGGACGGCGGCGATGGCA
TACCCGGCGCCGTTCGGCAATTGGCGCGGCGAGCCGACATGAAGCTGGTG
GACATTCCTCCGCTCGTGGTTcagcacgcggccaccagcagcaagcagcc
gctgcgcagcggcGTTCAACGCATCGTCGCCGTCTTCGAGACTTACGGCC
ACTGTAGCGGCGCGCTGCCGGAGATGCAAAATCGGCGAGTTCAATTTGAA
AACGACCTTCTGAAACAGCGCCGCGCGTGGGCCGATCACAGGGACATTCG
TCGTAACGAGACCGTCATCATGGGACTGCACGGCGCTGACCCGTTCGATG
ACCACTATCTCGACTACTATCTACGCCTCTCCACCCAAACCACACCTGCC
GCCCCAGACGCTTCGCGCGCCGCACAGCCACACAGTCGCTCGCGCTCGCG
CGCCTCTCGCTCATCATCAATACTCTTTGGTGTTCCAATCGCCCTCACCT
TTTCGCTCGGCGTCTGGCAGCTCTATCGTTTACGTCGAAAACACACATTG
ATCGTCGAGCGTCAACTTCGTCTCAGTTCCGCCCCAATCGATACAGCCTC
ACTCTTCCAACACGCCGATACCGATCACAGGCGTATCCAACTTACAGGTC
GCTTCTTGCACGAGCATGAAATGCTTGTAGGTCCTCGATCAGCCCCAAAA
CATACCCCCATGCCGGTTCTGCAATGGGGTGGTTCAACAGGTCTGCAAGT
TATCACACCGCTCAAGACCGATGATGGCAGTATTGTGTTGGTCAATCGCG
GTTGGATCCCCCAACGATTATCAGCTCGTTCGCGACGACATAATCCACAA
CTTAGTCCATACTCCTTCATCACAAAATTCGATCGCCACGCTACTTATTG
CGACTATCACGACTCCAGTGTTCTTTCTCCGCAAGTATCTTTTGTTGGTG
TCGTTAGAAGTACAGACGAGCGTAATCGTTTCACTCCAAAAAATGCTCCA
TCAAAGGACGAATGGTTTTACGTGGATGCGAATGCTATGCTGCACGCACA
CGGTCTGGAAGGTTGCGAGCGCCTTGTGGAGTTAGTTGAACCTCACCCAC
AAGCAGGTTGGCCTTTCCCTCGTAGCCTTGAATCGTATGCTGAATTTCGA
ACTCCACCAAGTACGCACATCACGTACGCCGTTACATGGTTTAGTCTAAG
CGCGTGCATTGCTCTGCTAACCCGTTTCAGAGCTCGCCAAAAACGTACTT
TTTAG
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protein sequence of Gchil2858.t1

>Gchil2858.t1 ID=Gchil2858.t1|Name=Gchil2858.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=535bp
MRNGAPITGFLPCAAGGFGRALFQSGHRWRNGRNETRSQTRCTLSAQRSC
ARRCQALTVEACRLDGFSSDFVRELRRLVRSPWFISRVRDRIEWPYFRFS
GVLFVRREIGYTDEHDEDDEHDEHDEHEDGGDGIPGAVRQLARRADMKLV
DIPPLVVQHAATSSKQPLRSGVQRIVAVFETYGHCSGALPEMQNRRVQFE
NDLLKQRRAWADHRDIRRNETVIMGLHGADPFDDHYLDYYLRLSTQTTPA
APDASRAAQPHSRSRSRASRSSSILFGVPIALTFSLGVWQLYRLRRKHTL
IVERQLRLSSAPIDTASLFQHADTDHRRIQLTGRFLHEHEMLVGPRSAPK
HTPMPVLQWGGSTGLQVITPLKTDDGSIVLVNRGWIPQRLSARSRRHNPQ
LSPYSFITKFDRHATYCDYHDSSVLSPQVSFVGVVRSTDERNRFTPKNAP
SKDEWFYVDANAMLHAHGLEGCERLVELVEPHPQAGWPFPRSLESYAEFR
TPPSTHITYAVTWFSLSACIALLTRFRARQKRTF*
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mRNA from alignment at tig00004406_pilon:927585..929398+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2858.t1 ID=Gchil2858.t1|Name=Gchil2858.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1814bp|location=Sequence derived from alignment at tig00004406_pilon:927585..929398+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCAACGGCGCTCCGATCACGGGCTTTCTGCCGTGTGCGGCGGGCGG
GTTCGGGCGTGCGTTGTTCCAGAGTGGGCATCGTTGGCGCAATGGACGCA
ATGAGACGAGAAGCCAAACGCGATGCACGCTGAGCGCGCAGCGCAGTTGC
GCCCGTCGGTGCCAGGCACTTACGGTGGAGGCGTGCAGGCTGGATGGCTT
TTCTAGCGACTTTGTTCGTGAACTGCGCCGACTGGTTCGATGTAAGTGAG
CATTTTCGGGTTTATGCATACAGCGTACGACGCGTGCGTGCTGACatgat
gatgatgatgatgatgatgatTTGGTAGCACCTTGGTTTATTTCGCGAGT
GCGGGACCGCATCGAATGGCCTTACTTTCGGTTCAGCGGGGTGCTGTTCG
TGCGCCGAGAGATAGGGTACACGgacgagcacgacgaagacgacgagcac
gacgagcacgacgagcacgaGGACGGCGGCGATGGCATACCCGGCGCCGT
TCGGCAATTGGCGCGGCGAGCCGACATGAAGCTGGTGGACATTCCTCCGC
TCGTGGTTcagcacgcggccaccagcagcaagcagccgctgcgcagcggc
GTTCAACGCATCGTCGCCGTCTTCGAGACTTACGGCCACTGTAGCGGCGC
GCTGCCGGAGATGCAAAATCGGCGAGTTCAATTTGAAAACGACCTTCTGA
AACAGCGCCGCGCGTGGGCCGATCACAGGGACATTCGTCGTAACGAGACC
GTCATCATGGGACTGCACGGCGCTGACCCGTTCGATGACCACTATCTCGA
CTACTATCTGTGAGACACCCTGCTTAAACCTTCGTCACCGTCATGTTCAC
TAGATCCGCCCTTCTCTCTCTTTCATTCACGCCTCCATCTTCTTCGTCTT
GCTCTCTTTCGTCTTTGCGCTTGTTTCACAGACGCCTCTCCACCCAAACC
ACACCTGCCGCCCCAGACGCTTCGCGCGCCGCACAGCCACACAGTCGCTC
GCGCTCGCGCGCCTCTCGCTCATCATCAATACTCTTTGGTGTTCCAATCG
CCCTCACCTTTTCGCTCGGCGTCTGGCAGCTCTATCGTTTACGTCGAAAA
CACACATTGATCGTCGAGCGTCAACTTCGTCTCAGTTCCGCCCCAATCGA
TACAGCCTCACTCTTCCAACACGCCGATACCGATCACAGGCGTATCCAAC
TTACAGGTCGCTTCTTGCACGAGCATGAAATGCTTGTAGGTCCTCGATCA
GCCCCAAAACATACCCCCATGCCGGTTCTGCAATGGGGTGGTTCAACAGG
TCTGCAAGTTATCACACCGCTCAAGACCGATGATGGCAGTATTGTGTTGG
TCAATCGCGGTTGGATCCCCCAACGATTATCAGCTCGTTCGCGACGACAT
AATCCACAACTTAGTCCATACTCCTTCATCACAAAATTCGATCGCCACGC
TACTTATTGCGACTATCACGACTCCAGTGTTCTTTCTCCGCAAGTATCTT
TTGTTGGTGTCGTTAGAAGTACAGACGAGCGTAATCGTTTCACTCCAAAA
AATGCTCCATCAAAGGACGAATGGTTTTACGTGGATGCGAATGCTATGCT
GCACGCACACGGTCTGGAAGGTTGCGAGCGCCTTGTGGAGTTAGTTGAAC
CTCACCCACAAGCAGGTTGGCCTTTCCCTCGTAGCCTTGAATCGTATGCT
GAATTTCGAACTCCACCAAGTACGCACATCACGTACGCCGTTACATGGTT
TAGTCTAAGCGCGTGCATTGCTCTGCTAACCCGTTTCAGAGCTCGCCAAA
AACGTACTTTTTAG
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Coding sequence (CDS) from alignment at tig00004406_pilon:927585..929398+

>Gchil2858.t1 ID=Gchil2858.t1|Name=Gchil2858.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1605bp|location=Sequence derived from alignment at tig00004406_pilon:927585..929398+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCAACGGCGCTCCGATCACGGGCTTTCTGCCGTGTGCGGCGGGCGG
GTTCGGGCGTGCGTTGTTCCAGAGTGGGCATCGTTGGCGCAATGGACGCA
ATGAGACGAGAAGCCAAACGCGATGCACGCTGAGCGCGCAGCGCAGTTGC
GCCCGTCGGTGCCAGGCACTTACGGTGGAGGCGTGCAGGCTGGATGGCTT
TTCTAGCGACTTTGTTCGTGAACTGCGCCGACTGGTTCGATCACCTTGGT
TTATTTCGCGAGTGCGGGACCGCATCGAATGGCCTTACTTTCGGTTCAGC
GGGGTGCTGTTCGTGCGCCGAGAGATAGGGTACACGgacgagcacgacga
agacgacgagcacgacgagcacgacgagcacgaGGACGGCGGCGATGGCA
TACCCGGCGCCGTTCGGCAATTGGCGCGGCGAGCCGACATGAAGCTGGTG
GACATTCCTCCGCTCGTGGTTcagcacgcggccaccagcagcaagcagcc
gctgcgcagcggcGTTCAACGCATCGTCGCCGTCTTCGAGACTTACGGCC
ACTGTAGCGGCGCGCTGCCGGAGATGCAAAATCGGCGAGTTCAATTTGAA
AACGACCTTCTGAAACAGCGCCGCGCGTGGGCCGATCACAGGGACATTCG
TCGTAACGAGACCGTCATCATGGGACTGCACGGCGCTGACCCGTTCGATG
ACCACTATCTCGACTACTATCTACGCCTCTCCACCCAAACCACACCTGCC
GCCCCAGACGCTTCGCGCGCCGCACAGCCACACAGTCGCTCGCGCTCGCG
CGCCTCTCGCTCATCATCAATACTCTTTGGTGTTCCAATCGCCCTCACCT
TTTCGCTCGGCGTCTGGCAGCTCTATCGTTTACGTCGAAAACACACATTG
ATCGTCGAGCGTCAACTTCGTCTCAGTTCCGCCCCAATCGATACAGCCTC
ACTCTTCCAACACGCCGATACCGATCACAGGCGTATCCAACTTACAGGTC
GCTTCTTGCACGAGCATGAAATGCTTGTAGGTCCTCGATCAGCCCCAAAA
CATACCCCCATGCCGGTTCTGCAATGGGGTGGTTCAACAGGTCTGCAAGT
TATCACACCGCTCAAGACCGATGATGGCAGTATTGTGTTGGTCAATCGCG
GTTGGATCCCCCAACGATTATCAGCTCGTTCGCGACGACATAATCCACAA
CTTAGTCCATACTCCTTCATCACAAAATTCGATCGCCACGCTACTTATTG
CGACTATCACGACTCCAGTGTTCTTTCTCCGCAAGTATCTTTTGTTGGTG
TCGTTAGAAGTACAGACGAGCGTAATCGTTTCACTCCAAAAAATGCTCCA
TCAAAGGACGAATGGTTTTACGTGGATGCGAATGCTATGCTGCACGCACA
CGGTCTGGAAGGTTGCGAGCGCCTTGTGGAGTTAGTTGAACCTCACCCAC
AAGCAGGTTGGCCTTTCCCTCGTAGCCTTGAATCGTATGCTGAATTTCGA
ACTCCACCAAGTACGCACATCACGTACGCCGTTACATGGTTTAGTCTAAG
CGCGTGCATTGCTCTGCTAACCCGTTTCAGAGCTCGCCAAAAACGTACTT
TTTAG
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