Gchil2818.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2818.t1
Unique NameGchil2818.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length206
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:710185..710802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706419.1
PFAMsDUF2358
Max annot lvl2759|Eukaryota
Evalue1.28e-22
EggNOG OGs28I8Z@1|root,2QQJ9@2759|Eukaryota
DescriptionUncharacterized conserved protein (DUF2358)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2818Gchil2818Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 710185..710802 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2818.t1.start1Gchil2818.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 710185..710187 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2818.t1.CDS1Gchil2818.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 710185..710802 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2818.t1.exon1Gchil2818.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 710185..710802 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2818.t1.stop1Gchil2818.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 710800..710802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2818.t1Gchil2818.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 710185..710802 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2818.t1 ID=Gchil2818.t1|Name=Gchil2818.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=206bp
MGSAHPPAPSSSAPSPPPPPPPPPNDHALRTPEYYANVGSVIDTLRADYP
ALLHDAPDLSIFTEHVVFSDASGNCIRGKRAYSKLFWVLRLQAMVFLGAH
CVRVQSVFHDDCDGCVYLRWRVQFSPRSWTLLSAVNSDAFVVDGMSLYRL
DHHGWVYHHSLENSVRRRRAQPAPQRVWSPARVVRDASVAGVGAAHRSDN
DSQLT*
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spliced messenger RNA

>Gchil2818.t1 ID=Gchil2818.t1|Name=Gchil2818.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=618bp|location=Sequence derived from alignment at tig00004406_pilon:710185..710802+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAGTGCGCACCCGCCGGCACCCTCTTCGTCGGCTCCGTCGCCACC
ACCGCCGCCACCGCCGCCTCCAAACGACCATGCGCTGCGCACGCCGGAGT
ACTACGCCAACGTGGGTTCGGTCATCGACACATTGCGCGCCGACTACCCC
GCGCTGTTGCACGACGCGCCGGACCTGTCCATCTTCACGGAGCACGTGGT
GTTTTCCGACGCGTCGGGCAATTGCATTCGCGGCAAGCGCGCCTACTCAA
AGCTGTTCTGGGTGCTACGCTTGCAGGCCATGGTGTTTCTGGGCGCGCAC
TGCGTGCGCGTACAAAGCGTCTTTCACGACGATTGTGACGGCTGTGTGTA
CTTGCGGTGGCGCGTGCAGTTCTCGCCGCGCAGCTGGACGTTGCTGTCGG
CCGTTAACAGCGACGCCTTTGTCGTGGACGGCATGTCGTTGTACCGTCTG
GACCACCACGGTTGGGTGTACCACCACAGCCTGGAAAACAGCGTGCGTCG
AAGACGCGCGCAACCCGCGCCACAGCGCGTGTGGAGCCCCGCGCGCGTCG
TGCGCGACGCCTCCGTCGCCGGCGTCGGTGCCGCCCACCGCTCCGACAAC
GACTCGCAGCTCACGTAG
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protein sequence of Gchil2818.t1

>Gchil2818.t1 ID=Gchil2818.t1|Name=Gchil2818.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=206bp
MGSAHPPAPSSSAPSPPPPPPPPPNDHALRTPEYYANVGSVIDTLRADYP
ALLHDAPDLSIFTEHVVFSDASGNCIRGKRAYSKLFWVLRLQAMVFLGAH
CVRVQSVFHDDCDGCVYLRWRVQFSPRSWTLLSAVNSDAFVVDGMSLYRL
DHHGWVYHHSLENSVRRRRAQPAPQRVWSPARVVRDASVAGVGAAHRSDN
DSQLT*
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mRNA from alignment at tig00004406_pilon:710185..710802+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2818.t1 ID=Gchil2818.t1|Name=Gchil2818.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=618bp|location=Sequence derived from alignment at tig00004406_pilon:710185..710802+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCAGTGCGCACCCGCCGGCACCCTCTTCGTCGGCTCCGTCGCCACC
ACCGCCGCCACCGCCGCCTCCAAACGACCATGCGCTGCGCACGCCGGAGT
ACTACGCCAACGTGGGTTCGGTCATCGACACATTGCGCGCCGACTACCCC
GCGCTGTTGCACGACGCGCCGGACCTGTCCATCTTCACGGAGCACGTGGT
GTTTTCCGACGCGTCGGGCAATTGCATTCGCGGCAAGCGCGCCTACTCAA
AGCTGTTCTGGGTGCTACGCTTGCAGGCCATGGTGTTTCTGGGCGCGCAC
TGCGTGCGCGTACAAAGCGTCTTTCACGACGATTGTGACGGCTGTGTGTA
CTTGCGGTGGCGCGTGCAGTTCTCGCCGCGCAGCTGGACGTTGCTGTCGG
CCGTTAACAGCGACGCCTTTGTCGTGGACGGCATGTCGTTGTACCGTCTG
GACCACCACGGTTGGGTGTACCACCACAGCCTGGAAAACAGCGTGCGTCG
AAGACGCGCGCAACCCGCGCCACAGCGCGTGTGGAGCCCCGCGCGCGTCG
TGCGCGACGCCTCCGTCGCCGGCGTCGGTGCCGCCCACCGCTCCGACAAC
GACTCGCAGCTCACGTAG
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Coding sequence (CDS) from alignment at tig00004406_pilon:710185..710802+

>Gchil2818.t1 ID=Gchil2818.t1|Name=Gchil2818.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=618bp|location=Sequence derived from alignment at tig00004406_pilon:710185..710802+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCAGTGCGCACCCGCCGGCACCCTCTTCGTCGGCTCCGTCGCCACC
ACCGCCGCCACCGCCGCCTCCAAACGACCATGCGCTGCGCACGCCGGAGT
ACTACGCCAACGTGGGTTCGGTCATCGACACATTGCGCGCCGACTACCCC
GCGCTGTTGCACGACGCGCCGGACCTGTCCATCTTCACGGAGCACGTGGT
GTTTTCCGACGCGTCGGGCAATTGCATTCGCGGCAAGCGCGCCTACTCAA
AGCTGTTCTGGGTGCTACGCTTGCAGGCCATGGTGTTTCTGGGCGCGCAC
TGCGTGCGCGTACAAAGCGTCTTTCACGACGATTGTGACGGCTGTGTGTA
CTTGCGGTGGCGCGTGCAGTTCTCGCCGCGCAGCTGGACGTTGCTGTCGG
CCGTTAACAGCGACGCCTTTGTCGTGGACGGCATGTCGTTGTACCGTCTG
GACCACCACGGTTGGGTGTACCACCACAGCCTGGAAAACAGCGTGCGTCG
AAGACGCGCGCAACCCGCGCCACAGCGCGTGTGGAGCCCCGCGCGCGTCG
TGCGCGACGCCTCCGTCGCCGGCGTCGGTGCCGCCCACCGCTCCGACAAC
GACTCGCAGCTCACGTAG
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