Gchil2797.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2797.t1
Unique NameGchil2797.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length349
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:527664..528710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28072.Nos7524_3767
Preferred namecscK
PFAMsPfkB
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00002,RC00017
KEGG koko:K00847
KEGG ReactionR00760,R00867,R03920
KEGG Pathwayko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100
Evalue5.17e-57
EggNOG OGsCOG0524@1|root,COG0524@2|Bacteria,1G0RV@1117|Cyanobacteria,1HJA7@1161|Nostocales
EC2.7.1.4
DescriptionPFAM pfkB family carbohydrate kinase
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2797Gchil2797Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 527664..528710 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2797.t1.stop1Gchil2797.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 527664..527666 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2797.t1.CDS1Gchil2797.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 527664..528710 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2797.t1.exon1Gchil2797.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 527664..528710 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2797.t1.start1Gchil2797.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 528708..528710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2797.t1Gchil2797.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 527664..528710 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2797.t1 ID=Gchil2797.t1|Name=Gchil2797.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=349bp
MVREAEPINQSPLGAPQILCAGEILYDLYAPPDTSTQDIELWSRVPGGAP
ANVAAALAQLGTGSAFIGMVGDDEGGDGLRRALVEKKVNIDGVQTAEGRR
TRTVFVRVFEDGDRDFVGFGGDNRSFADTQQIDGEKLPGVLFYAAKMLML
PTLGLAFDGCSKSYDLVLEMAKMCMLETVVDVNWRPVFWSDYSDEEARKR
IVNMTRKADILKISLDEVRFVFGEALARDALEDPERVRQTAQNKGVLITD
GANGSAYAFNYGEAVAGRAAAMQAEGGVVDTTGAGDAFLAGFLSEMMRKG
GTAALRDAAKVRDMVEIATATASFVIARKGVFSSLPSLREVEQLVARL*
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spliced messenger RNA

>Gchil2797.t1 ID=Gchil2797.t1|Name=Gchil2797.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at tig00004406_pilon:527664..528710- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGTGAAGCAGAGCCCATCAATCAGTCGCCGCTAGGCGCGCCGCA
AATCCTATGCGCAGGAGAGATTCTGTATGACCTGTACGCGCCGCCCGACA
CTTCGACCCAAGACATCGAGCTTTGGAGCAGAGTGCCCGGCGGCGCACCG
GCCAACGTGGCGGCTGCGCTGGCACAGCTCGGAACGGGCAGCGCGTTCAT
CGGGATGGTGGGCGACGACGAGGGTGGCGATGGTTTGAGACGTGCGTTGG
TAGAGAAGAAAGTGAACATTGACGGCGTACAAACGGCCGAGGGACGACGC
ACCAGGACTGTGTTCGTGCGCGTTTTCGAAGACGGCGATCGCGACTTTGT
CGGCTTTGGCGGCGACAATCGGAGTTTTGCGGATACACAGCAGATTGATG
GCGAGAAGTTACCCGGCGTTCTTTTCTACGCGGCGAAGATGCTTATGCTG
CCGACACTGGGACTTGCGTTTGACGGGTGTTCGAAATCATACGATCTGGT
GCTGGAGATGGCCAAAATGTGCATGCTGGAAACCGTGGTGGACGTGAACT
GGCGGCCGGTGTTTTGGAGCGATTACTCGGACGAAGAAGCGCGCAAACGA
ATTGTGAACATGACTCGAAAGGCAGACATATTAAAGATCTCTCTCGACGA
GGTGCGCTTCGTGTTTGGGGAAGCGCTGGCGCGCGACGCGCTGGAAGATC
CGGAGCGGGTGCGTCAAACGGCGCAAAACAAGGGTGTGCTCATCACTGAC
GGCGCGAACGGAAGTGCATATGCGTTCAACTACGGAGAGGCGGTGGCGGG
GCGCGCGGCGGCCATGCAGGCGGAGGGCGGGGTGGTGGATACTACAGGTG
CGGGCGACGCGTTTCTGGCGGGGTTTTTGTCCGAGATGATGCGCAAGGGC
GGCACAGCGGCGCTGAGGGACGCAGCAAAGGTGCGGGATATGGTTGAGAT
TGCGACGGCGACGGCGAGTTTTGTAATTGCACGGAAGGGAGTGTTCTCGA
GCTTGCCAAGCTTGAGAGAGGTGGAGCAACTGGTAGCACGGTTGTGA
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protein sequence of Gchil2797.t1

>Gchil2797.t1 ID=Gchil2797.t1|Name=Gchil2797.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=349bp
MVREAEPINQSPLGAPQILCAGEILYDLYAPPDTSTQDIELWSRVPGGAP
ANVAAALAQLGTGSAFIGMVGDDEGGDGLRRALVEKKVNIDGVQTAEGRR
TRTVFVRVFEDGDRDFVGFGGDNRSFADTQQIDGEKLPGVLFYAAKMLML
PTLGLAFDGCSKSYDLVLEMAKMCMLETVVDVNWRPVFWSDYSDEEARKR
IVNMTRKADILKISLDEVRFVFGEALARDALEDPERVRQTAQNKGVLITD
GANGSAYAFNYGEAVAGRAAAMQAEGGVVDTTGAGDAFLAGFLSEMMRKG
GTAALRDAAKVRDMVEIATATASFVIARKGVFSSLPSLREVEQLVARL*
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mRNA from alignment at tig00004406_pilon:527664..528710-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2797.t1 ID=Gchil2797.t1|Name=Gchil2797.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at tig00004406_pilon:527664..528710- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCGTGAAGCAGAGCCCATCAATCAGTCGCCGCTAGGCGCGCCGCA
AATCCTATGCGCAGGAGAGATTCTGTATGACCTGTACGCGCCGCCCGACA
CTTCGACCCAAGACATCGAGCTTTGGAGCAGAGTGCCCGGCGGCGCACCG
GCCAACGTGGCGGCTGCGCTGGCACAGCTCGGAACGGGCAGCGCGTTCAT
CGGGATGGTGGGCGACGACGAGGGTGGCGATGGTTTGAGACGTGCGTTGG
TAGAGAAGAAAGTGAACATTGACGGCGTACAAACGGCCGAGGGACGACGC
ACCAGGACTGTGTTCGTGCGCGTTTTCGAAGACGGCGATCGCGACTTTGT
CGGCTTTGGCGGCGACAATCGGAGTTTTGCGGATACACAGCAGATTGATG
GCGAGAAGTTACCCGGCGTTCTTTTCTACGCGGCGAAGATGCTTATGCTG
CCGACACTGGGACTTGCGTTTGACGGGTGTTCGAAATCATACGATCTGGT
GCTGGAGATGGCCAAAATGTGCATGCTGGAAACCGTGGTGGACGTGAACT
GGCGGCCGGTGTTTTGGAGCGATTACTCGGACGAAGAAGCGCGCAAACGA
ATTGTGAACATGACTCGAAAGGCAGACATATTAAAGATCTCTCTCGACGA
GGTGCGCTTCGTGTTTGGGGAAGCGCTGGCGCGCGACGCGCTGGAAGATC
CGGAGCGGGTGCGTCAAACGGCGCAAAACAAGGGTGTGCTCATCACTGAC
GGCGCGAACGGAAGTGCATATGCGTTCAACTACGGAGAGGCGGTGGCGGG
GCGCGCGGCGGCCATGCAGGCGGAGGGCGGGGTGGTGGATACTACAGGTG
CGGGCGACGCGTTTCTGGCGGGGTTTTTGTCCGAGATGATGCGCAAGGGC
GGCACAGCGGCGCTGAGGGACGCAGCAAAGGTGCGGGATATGGTTGAGAT
TGCGACGGCGACGGCGAGTTTTGTAATTGCACGGAAGGGAGTGTTCTCGA
GCTTGCCAAGCTTGAGAGAGGTGGAGCAACTGGTAGCACGGTTGTGA
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Coding sequence (CDS) from alignment at tig00004406_pilon:527664..528710-

>Gchil2797.t1 ID=Gchil2797.t1|Name=Gchil2797.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1047bp|location=Sequence derived from alignment at tig00004406_pilon:527664..528710- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCGTGAAGCAGAGCCCATCAATCAGTCGCCGCTAGGCGCGCCGCA
AATCCTATGCGCAGGAGAGATTCTGTATGACCTGTACGCGCCGCCCGACA
CTTCGACCCAAGACATCGAGCTTTGGAGCAGAGTGCCCGGCGGCGCACCG
GCCAACGTGGCGGCTGCGCTGGCACAGCTCGGAACGGGCAGCGCGTTCAT
CGGGATGGTGGGCGACGACGAGGGTGGCGATGGTTTGAGACGTGCGTTGG
TAGAGAAGAAAGTGAACATTGACGGCGTACAAACGGCCGAGGGACGACGC
ACCAGGACTGTGTTCGTGCGCGTTTTCGAAGACGGCGATCGCGACTTTGT
CGGCTTTGGCGGCGACAATCGGAGTTTTGCGGATACACAGCAGATTGATG
GCGAGAAGTTACCCGGCGTTCTTTTCTACGCGGCGAAGATGCTTATGCTG
CCGACACTGGGACTTGCGTTTGACGGGTGTTCGAAATCATACGATCTGGT
GCTGGAGATGGCCAAAATGTGCATGCTGGAAACCGTGGTGGACGTGAACT
GGCGGCCGGTGTTTTGGAGCGATTACTCGGACGAAGAAGCGCGCAAACGA
ATTGTGAACATGACTCGAAAGGCAGACATATTAAAGATCTCTCTCGACGA
GGTGCGCTTCGTGTTTGGGGAAGCGCTGGCGCGCGACGCGCTGGAAGATC
CGGAGCGGGTGCGTCAAACGGCGCAAAACAAGGGTGTGCTCATCACTGAC
GGCGCGAACGGAAGTGCATATGCGTTCAACTACGGAGAGGCGGTGGCGGG
GCGCGCGGCGGCCATGCAGGCGGAGGGCGGGGTGGTGGATACTACAGGTG
CGGGCGACGCGTTTCTGGCGGGGTTTTTGTCCGAGATGATGCGCAAGGGC
GGCACAGCGGCGCTGAGGGACGCAGCAAAGGTGCGGGATATGGTTGAGAT
TGCGACGGCGACGGCGAGTTTTGTAATTGCACGGAAGGGAGTGTTCTCGA
GCTTGCCAAGCTTGAGAGAGGTGGAGCAACTGGTAGCACGGTTGTGA
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