Gchil1583.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1583.t2
Unique NameGchil1583.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length245
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1062125..1062859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1583Gchil1583Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1062125..1062859 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1583.t2.stop1Gchil1583.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1062125..1062127 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1583.t2.CDS1Gchil1583.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1062125..1062859 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1583.t2.exon1Gchil1583.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1062125..1062859 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1583.t2.start1Gchil1583.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1062857..1062859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1583.t2Gchil1583.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1062125..1062859 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1583.t2 ID=Gchil1583.t2|Name=Gchil1583.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=245bp
MVTAIKESKDEFVLEIGGLVNLEDNDPNDYTIQERDFGFSTCANLNYTRM
TRREFSIRIIAMNSRLDIRGLARAIIAYLNEEVPFPDDSGVYRSYNAVDL
MAEVFFSGTVDSDEHPDQVIGQFERMQVRVREKEQDITVLYSSAIVLIVV
VAVAALSGIVTNVFIDNQGRDITSVAWTLGVVRSHYERLGRCWNKTPDTT
TYWVQVRDGSSTHFGPEGYGAIAQAGDGVRNEDITGCTTLRQAE*
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spliced messenger RNA

>Gchil1583.t2 ID=Gchil1583.t2|Name=Gchil1583.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00004403_pilon:1062125..1062859- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTACAGCCATAAAGGAATCAAAAGATGAATTTGTGTTGGAGATTGG
GGGACTTGTGAACCTGGAAGATAATGATCCTAATGACTACACGATACAGG
AAAGAGATTTCGGCTTTTCTACGTGTGCCAACCTCAACTACACCCGTATG
ACGCGACGAGAGTTCAGCATAAGGATTATTGCAATGAACTCCAGACTAGA
TATTAGAGGATTGGCTAGGGCAATCATCGCTTACTTGAACGAAGAAGTCC
CATTCCCGGATGATTCAGGAGTGTATAGATCATACAATGCAGTGGACTTG
ATGGCAGAGGTTTTCTTTTCAGGAACAGTTGATTCCGATGAACACCCTGA
TCAGGTTATTGGTCAATTCGAGAGAATGCAAGTGCGTGTTCGGGAAAAGG
AGCAGGATATAACGGTTCTGTATTCGAGTGCGATAGTGCTAATTGTTGTT
GTGGCTGTAGCGGCTTTGAGCGGTATAGTAACCAACGTGTTCATCGATAA
TCAGGGAAGGGACATAACTTCAGTGGCATGGACGCTGGGAGTTGTGCGAT
CGCACTACGAGAGGCTCGGAAGGTGTTGGAACAAGACACCTGATACTACC
ACCTACTGGGTGCAGGTAAGAGACGGATCGTCGACGCACTTCGGACCGGA
AGGGTACGGGGCCATTGCGCAGGCTGGAGACGGCGTACGGAATGAAGACA
TCACGGGCTGTACAACGCTTCGGCAGGCCGAGTAA
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protein sequence of Gchil1583.t2

>Gchil1583.t2 ID=Gchil1583.t2|Name=Gchil1583.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=245bp
MVTAIKESKDEFVLEIGGLVNLEDNDPNDYTIQERDFGFSTCANLNYTRM
TRREFSIRIIAMNSRLDIRGLARAIIAYLNEEVPFPDDSGVYRSYNAVDL
MAEVFFSGTVDSDEHPDQVIGQFERMQVRVREKEQDITVLYSSAIVLIVV
VAVAALSGIVTNVFIDNQGRDITSVAWTLGVVRSHYERLGRCWNKTPDTT
TYWVQVRDGSSTHFGPEGYGAIAQAGDGVRNEDITGCTTLRQAE*
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mRNA from alignment at tig00004403_pilon:1062125..1062859-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1583.t2 ID=Gchil1583.t2|Name=Gchil1583.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00004403_pilon:1062125..1062859- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTACAGCCATAAAGGAATCAAAAGATGAATTTGTGTTGGAGATTGG
GGGACTTGTGAACCTGGAAGATAATGATCCTAATGACTACACGATACAGG
AAAGAGATTTCGGCTTTTCTACGTGTGCCAACCTCAACTACACCCGTATG
ACGCGACGAGAGTTCAGCATAAGGATTATTGCAATGAACTCCAGACTAGA
TATTAGAGGATTGGCTAGGGCAATCATCGCTTACTTGAACGAAGAAGTCC
CATTCCCGGATGATTCAGGAGTGTATAGATCATACAATGCAGTGGACTTG
ATGGCAGAGGTTTTCTTTTCAGGAACAGTTGATTCCGATGAACACCCTGA
TCAGGTTATTGGTCAATTCGAGAGAATGCAAGTGCGTGTTCGGGAAAAGG
AGCAGGATATAACGGTTCTGTATTCGAGTGCGATAGTGCTAATTGTTGTT
GTGGCTGTAGCGGCTTTGAGCGGTATAGTAACCAACGTGTTCATCGATAA
TCAGGGAAGGGACATAACTTCAGTGGCATGGACGCTGGGAGTTGTGCGAT
CGCACTACGAGAGGCTCGGAAGGTGTTGGAACAAGACACCTGATACTACC
ACCTACTGGGTGCAGGTAAGAGACGGATCGTCGACGCACTTCGGACCGGA
AGGGTACGGGGCCATTGCGCAGGCTGGAGACGGCGTACGGAATGAAGACA
TCACGGGCTGTACAACGCTTCGGCAGGCCGAGTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1062125..1062859-

>Gchil1583.t2 ID=Gchil1583.t2|Name=Gchil1583.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=735bp|location=Sequence derived from alignment at tig00004403_pilon:1062125..1062859- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTACAGCCATAAAGGAATCAAAAGATGAATTTGTGTTGGAGATTGG
GGGACTTGTGAACCTGGAAGATAATGATCCTAATGACTACACGATACAGG
AAAGAGATTTCGGCTTTTCTACGTGTGCCAACCTCAACTACACCCGTATG
ACGCGACGAGAGTTCAGCATAAGGATTATTGCAATGAACTCCAGACTAGA
TATTAGAGGATTGGCTAGGGCAATCATCGCTTACTTGAACGAAGAAGTCC
CATTCCCGGATGATTCAGGAGTGTATAGATCATACAATGCAGTGGACTTG
ATGGCAGAGGTTTTCTTTTCAGGAACAGTTGATTCCGATGAACACCCTGA
TCAGGTTATTGGTCAATTCGAGAGAATGCAAGTGCGTGTTCGGGAAAAGG
AGCAGGATATAACGGTTCTGTATTCGAGTGCGATAGTGCTAATTGTTGTT
GTGGCTGTAGCGGCTTTGAGCGGTATAGTAACCAACGTGTTCATCGATAA
TCAGGGAAGGGACATAACTTCAGTGGCATGGACGCTGGGAGTTGTGCGAT
CGCACTACGAGAGGCTCGGAAGGTGTTGGAACAAGACACCTGATACTACC
ACCTACTGGGTGCAGGTAAGAGACGGATCGTCGACGCACTTCGGACCGGA
AGGGTACGGGGCCATTGCGCAGGCTGGAGACGGCGTACGGAATGAAGACA
TCACGGGCTGTACAACGCTTCGGCAGGCCGAGTAA
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