Gchil1687.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1687.t1
Unique Name	Gchil1687.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	673

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:1665559..1667894 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	269797.Mbar_A0545
PFAMs	DUF4062,WD40
Max annot lvl	2157\|Archaea
Evalue	7.07e-09
EggNOG OGs	COG2319@1\|root,arCOG02561@2157\|Archaea
Description	Tetratricopeptide repeat
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1687	Gchil1687	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 1665559..1667894 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1687.t1	Gchil1687.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 1665559..1667894 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1687.t1.start1	Gchil1687.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 1665559..1665561 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1687.t1.CDS1	Gchil1687.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 1665559..1665968 +
Gchil1687.t1.CDS2	Gchil1687.t1.CDS2	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 1666221..1667739 +
Gchil1687.t1.CDS3	Gchil1687.t1.CDS3	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 1667805..1667894 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1687.t1.exon1	Gchil1687.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 1665559..1665968 +
Gchil1687.t1.exon2	Gchil1687.t1.exon2	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 1666221..1667739 +
Gchil1687.t1.exon3	Gchil1687.t1.exon3	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 1667805..1667894 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1687.t1.intron1	Gchil1687.t1.intron1	Gracilaria chilensis NLEC103_M9 male	intron	tig00004403_pilon 1665969..1666220 +
Gchil1687.t1.intron2	Gchil1687.t1.intron2	Gracilaria chilensis NLEC103_M9 male	intron	tig00004403_pilon 1667740..1667804 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1687.t1.stop1	Gchil1687.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 1667892..1667894 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:1665559..1667894+
coding sequence from alignment at tig00004403_pilon:1665559..1667894+

mRNA sequence

>Gchil1687.t1 ID=Gchil1687.t1|Name=Gchil1687.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=673bp
MDPPAFRDLFAVLQKLETTVNRFFERKDIAQDNKKKLRQLQSQYRRANDL
IRQLEGLSTPDFVTRARLSLYCDDLQQNSVELNDLQSDIDKATVRNRVRR
MEKVLKQCETDVKELFQFLTDNVSPTLRDAQNLGQDEPATIIQGIASIVE
RTNGSRLAEQVRASKTLQEASDKASIWFRPHNCLFLVDDIWWLNGIDSSV
FTLLGTMVNEGSRLVYTTRDMRFLGQTDKRIEFSEKKAHGELARRMLMRH
AGFGAEHRLEDVNKNAFESILHICQGLPLALGIAGGSVWKYSLEQHADQK
QNAWSDFHRDLLSKRKDLLDIPAAGYGALTNIVDVSLEVLEMRSERRNYQ
KLFRAFCVVQKQQCVPLNMLKNLWDLESLAEVEKVVEMMKDVSLLQVRRE
SGFISVQLHDLILNTAVRKASEEHEAQMFFRTLIHNYIRSETTEVGNWLR
AAWWNTGDDGYIHNNLCRALRNAGYVDELLWLLSKPQWIVMRLQNGGISV
VEQDLEQGTDVAGAGSTEISDERKHLEIIGKAARMSWVYVNNNPYEAWFQ
MHGRLLWYATQCEKTRKFVEEIERSAPRPWAKASVGFLQPAGGAMLDTIP
ILGHIIGVSYEGDEIVVVEQYMEVVKVARYNLTSGTRKIQDLSEDGDGTP
ERKGCRVEYRNRCDDAYPRTSM*

spliced messenger RNA

>Gchil1687.t1 ID=Gchil1687.t1|Name=Gchil1687.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2019bp|location=Sequence derived from alignment at tig00004403_pilon:1665559..1667894+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCCTCCGGCGTTTCGGGACCTGTTTGCGGTGCTTCAAAAGCTCGA
GACCACTGTGAACAGGTTCTTCGAACGCAAGGATATTGCCCAAGATAACA
AGAAGAAGCTTCGCCAACTGCAAAGTCAGTACAGGCGTGCGAATGATTTG
ATTCGACAGCTTGAAGGCTTGTCAACCCCAGACTTCGTAACACGCGCAAG
GTTGTCGCTTTATTGTGACGATTTGCAACAAAACTCCGTCGAACTCAACG
ACTTGCAGTCAGATATCGACAAAGCTACGGTGCGAAATCGAGTCCGCCGA
ATGGAGAAAGTATTGAAGCAGTGCGAGACGGATGTGAAGGAGTTGTTCCA
ATTCCTAACTGACAATGTCTCTCCGACGCTTAGAGATGCACAGAATTTGG
GCCAAGatgaGCCAGCGACGATCATACAGGGTATCGCAAGTATTGTGGAA
CGGACAAACGGTTCACGGCTGGCGGAACAGGTAAGAGCTTCCAAAACGCT
GCAAGAGGCATCGGACAAGGCCTCTATATGGTTCAGACCTCATAACTGTC
TGTTTCTCGTAGATGACATATGGTGGTTGAACGGCATTGATTCCAGTGTG
TTCACCCTACTTGGCACAATGGTGAACGAAGGCAGTCGACTGGTGTACAC
CACGAGAGACATGCGTTTTCTGGGACAAACTGATAAGCGGATTGAGTTTT
CAGAGAAAAAAGCCCATGGCGAGTTAGCCAGACGTATGCTGATGAGGCAT
GCTGGTTTTGGTGCAGAGCACAGGCTTGAAGACGTGAACAAGAATGCCTT
CGAATCTATTCTTCACATATGCCAGGGGCTCCCACTTGCACTTGGCATTG
CTGGAGGCTCAGTATGGAAGTATTCTCTTGAGCAGCATGCAGATCAAAAG
CAGAATGCATGGTCCGATTTTCATCGAGATCTGTTGTCGAAGCGAAAAGA
CTTGCTGGATATCCCTGCGGCGGGATACGGCGCTCTTACGAACATTGTGG
ATGTTTCCCTTGAAGTGCTGGAGATGCGGAGTGAACGCAGGAACTACCAG
AAGCTGTTTCGGGCCTTTTGTGTTGTTCAAAAACAACAGTGTGTTCCGCT
CAACATGCTGAAGAACCTGTGGGACTTGGAGAGCTTGGCTGAAGTTGAGA
AAGTTGTAGAAATGATGAAAGATGTGTCACTTTTGCAAGTGAGGAGGGAA
AGTGGTTTTATATCTGTTCAGCTACACGACTTGATCTTAAACACTGCTGT
TCGAAAGGCATCAGAAGAGCACGAAGCTCAAATGTTCTTTCGAACTTTAA
TTCACAACTACATTCGATCTGAGACCACTGAAGTCGGCAACTGGTTGCGA
GCagcgtggtggaatactggcgatgacggttatattcacaacaatctttg
cagagcacttcgcaatgcaggatacgttgatgaattgctatggctactgt
caaaaccgcaatggatcgtgATGCGTCTGCAAAACGGCGGGATTTCGGTC
GTAGAGCAAGACCTCGAACAAGGAACAGATGTCGCCGGCGCGGGCAGTAC
CGAGATCTCGGATGAAAGAAAGCATCTGGAAATCATTGGAAAGGCTGCCC
GCATGAGTTGGGTGTATGTTAACAACAATCCGTATGAAGCGTGGTTTCAG
ATGCACGGTCGATTGTTGTGGTATGCGACGCAGTGTGAAAAGACTCGAAA
GTTTGTCGAGGAGATAGAGCGTAGTGCACCGAGACCGTGGGCTAAAGCTT
CTGTAGGATTTTTGCAACCAGCGGGTGGTGCAATGCTGGATACGATCCCG
ATCCTTGGACATATTATTGGCGTGAGCTATGAAGGCGACGAAATTGTCGT
TGTGGAGCAGTATATGGAGGTTGTGAAGGTTGCGAGGTATAACCTTACGA
GTGGCACTCGCAAAATCCAGGACTTGAGCGAGGATGGCGACGGGACACCG
GAACGGAAAGGTTGTCGTGTGGAATACCGAAACAGGTGCGATGATGCGTA
TCCTCGGACATCAATGTAA

protein sequence of Gchil1687.t1

>Gchil1687.t1 ID=Gchil1687.t1|Name=Gchil1687.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=673bp
MDPPAFRDLFAVLQKLETTVNRFFERKDIAQDNKKKLRQLQSQYRRANDL
IRQLEGLSTPDFVTRARLSLYCDDLQQNSVELNDLQSDIDKATVRNRVRR
MEKVLKQCETDVKELFQFLTDNVSPTLRDAQNLGQDEPATIIQGIASIVE
RTNGSRLAEQVRASKTLQEASDKASIWFRPHNCLFLVDDIWWLNGIDSSV
FTLLGTMVNEGSRLVYTTRDMRFLGQTDKRIEFSEKKAHGELARRMLMRH
AGFGAEHRLEDVNKNAFESILHICQGLPLALGIAGGSVWKYSLEQHADQK
QNAWSDFHRDLLSKRKDLLDIPAAGYGALTNIVDVSLEVLEMRSERRNYQ
KLFRAFCVVQKQQCVPLNMLKNLWDLESLAEVEKVVEMMKDVSLLQVRRE
SGFISVQLHDLILNTAVRKASEEHEAQMFFRTLIHNYIRSETTEVGNWLR
AAWWNTGDDGYIHNNLCRALRNAGYVDELLWLLSKPQWIVMRLQNGGISV
VEQDLEQGTDVAGAGSTEISDERKHLEIIGKAARMSWVYVNNNPYEAWFQ
MHGRLLWYATQCEKTRKFVEEIERSAPRPWAKASVGFLQPAGGAMLDTIP
ILGHIIGVSYEGDEIVVVEQYMEVVKVARYNLTSGTRKIQDLSEDGDGTP
ERKGCRVEYRNRCDDAYPRTSM*

mRNA from alignment at tig00004403_pilon:1665559..1667894+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1687.t1 ID=Gchil1687.t1|Name=Gchil1687.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2336bp|location=Sequence derived from alignment at tig00004403_pilon:1665559..1667894+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCCTCCGGCGTTTCGGGACCTGTTTGCGGTGCTTCAAAAGCTCGA
GACCACTGTGAACAGGTTCTTCGAACGCAAGGATATTGCCCAAGATAACA
AGAAGAAGCTTCGCCAACTGCAAAGTCAGTACAGGCGTGCGAATGATTTG
ATTCGACAGCTTGAAGGCTTGTCAACCCCAGACTTCGTAACACGCGCAAG
GTTGTCGCTTTATTGTGACGATTTGCAACAAAACTCCGTCGAACTCAACG
ACTTGCAGTCAGATATCGACAAAGCTACGGTGCGAAATCGAGTCCGCCGA
ATGGAGAAAGTATTGAAGCAGTGCGAGACGGATGTGAAGGAGTTGTTCCA
ATTCCTAACTGACAATGTCTCTCCGACGCTTAGAGATGCACAGAATTTGG
GCCAAGatgagtacttaccggataacaacgtgccacccaacccaccccga
ctgactctggactacagcactaccaccacatgcgagggaagactgaaaaa
cgcaattctggacaagtccgagaatcgcattgttgctgttctcgccaccg
ggagaggtggcgttggcaaaacatgcgctctgcgaggccttgcgtccgac
aaagaagtcaagaaacgatttcctggtggtacTCTTTACATTCAGCTTTG
CAAGGATGCCAGGCCAGCGACGATCATACAGGGTATCGCAAGTATTGTGG
AACGGACAAACGGTTCACGGCTGGCGGAACAGGTAAGAGCTTCCAAAACG
CTGCAAGAGGCATCGGACAAGGCCTCTATATGGTTCAGACCTCATAACTG
TCTGTTTCTCGTAGATGACATATGGTGGTTGAACGGCATTGATTCCAGTG
TGTTCACCCTACTTGGCACAATGGTGAACGAAGGCAGTCGACTGGTGTAC
ACCACGAGAGACATGCGTTTTCTGGGACAAACTGATAAGCGGATTGAGTT
TTCAGAGAAAAAAGCCCATGGCGAGTTAGCCAGACGTATGCTGATGAGGC
ATGCTGGTTTTGGTGCAGAGCACAGGCTTGAAGACGTGAACAAGAATGCC
TTCGAATCTATTCTTCACATATGCCAGGGGCTCCCACTTGCACTTGGCAT
TGCTGGAGGCTCAGTATGGAAGTATTCTCTTGAGCAGCATGCAGATCAAA
AGCAGAATGCATGGTCCGATTTTCATCGAGATCTGTTGTCGAAGCGAAAA
GACTTGCTGGATATCCCTGCGGCGGGATACGGCGCTCTTACGAACATTGT
GGATGTTTCCCTTGAAGTGCTGGAGATGCGGAGTGAACGCAGGAACTACC
AGAAGCTGTTTCGGGCCTTTTGTGTTGTTCAAAAACAACAGTGTGTTCCG
CTCAACATGCTGAAGAACCTGTGGGACTTGGAGAGCTTGGCTGAAGTTGA
GAAAGTTGTAGAAATGATGAAAGATGTGTCACTTTTGCAAGTGAGGAGGG
AAAGTGGTTTTATATCTGTTCAGCTACACGACTTGATCTTAAACACTGCT
GTTCGAAAGGCATCAGAAGAGCACGAAGCTCAAATGTTCTTTCGAACTTT
AATTCACAACTACATTCGATCTGAGACCACTGAAGTCGGCAACTGGTTGC
GAGCagcgtggtggaatactggcgatgacggttatattcacaacaatctt
tgcagagcacttcgcaatgcaggatacgttgatgaattgctatggctact
gtcaaaaccgcaatggatcgtgATGCGTCTGCAAAACGGCGGGATTTCGG
TCGTAGAGCAAGACCTCGAACAAGGAACAGATGTCGCCGGCGCGGGCAGT
ACCGAGATCTCGGATGAAAGAAAGCATCTGGAAATCATTGGAAAGGCTGC
CCGCATGAGTTGGGTGTATGTTAACAACAATCCGTATGAAGCGTGGTTTC
AGATGCACGGTCGATTGTTGTGGTATGCGACGCAGTGTGAAAAGACTCGA
AAGTTTGTCGAGGAGATAGAGCGTAGTGCACCGAGACCGTGGGCTAAAGC
TTCTGTAGGATTTTTGCAACCAGCGGGTGGTGCAATGCTGGATACGATCC
CGATCCTTGGACATATTATTGGCGTGAGCTATGAAGGCGACGAAATTGTC
GTTGTGGAGCAGTATATGGAGGTTGTGAAGGTTGCGAGGTATAACCTTAC
GAGTGGCACTCGCAAAATCCAGGACTTGAGCGTCGAAGGAGACAGTCTGG
ATTGGATACTAGACGTCAATTGTTGCGCCTTTTCACTGGACCAAAGGAGG
ATGGCGACGGGACACCGGAACGGAAAGGTTGTCGTGTGGAATACCGAAAC
AGGTGCGATGATGCGTATCCTCGGACATCAATGTAA

Coding sequence (CDS) from alignment at tig00004403_pilon:1665559..1667894+

>Gchil1687.t1 ID=Gchil1687.t1|Name=Gchil1687.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2019bp|location=Sequence derived from alignment at tig00004403_pilon:1665559..1667894+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCCTCCGGCGTTTCGGGACCTGTTTGCGGTGCTTCAAAAGCTCGA
GACCACTGTGAACAGGTTCTTCGAACGCAAGGATATTGCCCAAGATAACA
AGAAGAAGCTTCGCCAACTGCAAAGTCAGTACAGGCGTGCGAATGATTTG
ATTCGACAGCTTGAAGGCTTGTCAACCCCAGACTTCGTAACACGCGCAAG
GTTGTCGCTTTATTGTGACGATTTGCAACAAAACTCCGTCGAACTCAACG
ACTTGCAGTCAGATATCGACAAAGCTACGGTGCGAAATCGAGTCCGCCGA
ATGGAGAAAGTATTGAAGCAGTGCGAGACGGATGTGAAGGAGTTGTTCCA
ATTCCTAACTGACAATGTCTCTCCGACGCTTAGAGATGCACAGAATTTGG
GCCAAGatgaGCCAGCGACGATCATACAGGGTATCGCAAGTATTGTGGAA
CGGACAAACGGTTCACGGCTGGCGGAACAGGTAAGAGCTTCCAAAACGCT
GCAAGAGGCATCGGACAAGGCCTCTATATGGTTCAGACCTCATAACTGTC
TGTTTCTCGTAGATGACATATGGTGGTTGAACGGCATTGATTCCAGTGTG
TTCACCCTACTTGGCACAATGGTGAACGAAGGCAGTCGACTGGTGTACAC
CACGAGAGACATGCGTTTTCTGGGACAAACTGATAAGCGGATTGAGTTTT
CAGAGAAAAAAGCCCATGGCGAGTTAGCCAGACGTATGCTGATGAGGCAT
GCTGGTTTTGGTGCAGAGCACAGGCTTGAAGACGTGAACAAGAATGCCTT
CGAATCTATTCTTCACATATGCCAGGGGCTCCCACTTGCACTTGGCATTG
CTGGAGGCTCAGTATGGAAGTATTCTCTTGAGCAGCATGCAGATCAAAAG
CAGAATGCATGGTCCGATTTTCATCGAGATCTGTTGTCGAAGCGAAAAGA
CTTGCTGGATATCCCTGCGGCGGGATACGGCGCTCTTACGAACATTGTGG
ATGTTTCCCTTGAAGTGCTGGAGATGCGGAGTGAACGCAGGAACTACCAG
AAGCTGTTTCGGGCCTTTTGTGTTGTTCAAAAACAACAGTGTGTTCCGCT
CAACATGCTGAAGAACCTGTGGGACTTGGAGAGCTTGGCTGAAGTTGAGA
AAGTTGTAGAAATGATGAAAGATGTGTCACTTTTGCAAGTGAGGAGGGAA
AGTGGTTTTATATCTGTTCAGCTACACGACTTGATCTTAAACACTGCTGT
TCGAAAGGCATCAGAAGAGCACGAAGCTCAAATGTTCTTTCGAACTTTAA
TTCACAACTACATTCGATCTGAGACCACTGAAGTCGGCAACTGGTTGCGA
GCagcgtggtggaatactggcgatgacggttatattcacaacaatctttg
cagagcacttcgcaatgcaggatacgttgatgaattgctatggctactgt
caaaaccgcaatggatcgtgATGCGTCTGCAAAACGGCGGGATTTCGGTC
GTAGAGCAAGACCTCGAACAAGGAACAGATGTCGCCGGCGCGGGCAGTAC
CGAGATCTCGGATGAAAGAAAGCATCTGGAAATCATTGGAAAGGCTGCCC
GCATGAGTTGGGTGTATGTTAACAACAATCCGTATGAAGCGTGGTTTCAG
ATGCACGGTCGATTGTTGTGGTATGCGACGCAGTGTGAAAAGACTCGAAA
GTTTGTCGAGGAGATAGAGCGTAGTGCACCGAGACCGTGGGCTAAAGCTT
CTGTAGGATTTTTGCAACCAGCGGGTGGTGCAATGCTGGATACGATCCCG
ATCCTTGGACATATTATTGGCGTGAGCTATGAAGGCGACGAAATTGTCGT
TGTGGAGCAGTATATGGAGGTTGTGAAGGTTGCGAGGTATAACCTTACGA
GTGGCACTCGCAAAATCCAGGACTTGAGCGAGGATGGCGACGGGACACCG
GAACGGAAAGGTTGTCGTGTGGAATACCGAAACAGGTGCGATGATGCGTA
TCCTCGGACATCAATGTAA