Gchil1518.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1518.t1
Unique Name	Gchil1518.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	467

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:740066..741466 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMH256CT
PFAMs	SE
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00201
KEGG ko	ko:K00511
KEGG Reaction	R02874
KEGG Pathway	ko00100,ko00909,ko01100,ko01110,ko01130,map00100,map00909,map01100,map01110,map01130
GOs	GO:0001101,GO:0003674,GO:0003824,GO:0004497,GO:0004506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006629,GO:0006694,GO:0006950,GO:0008150,GO:0008152,GO:0008202,GO:0008610,GO:0009058,GO:0009414,GO:0009415,GO:0009611,GO:0009628,GO:0009719,GO:0009725,GO:0009753,GO:0010033,GO:0010035,GO:0012505,GO:0016125,GO:0016126,GO:0016491,GO:0016705,GO:0016709,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1901700
Evalue	3.49e-165
EggNOG OGs	COG0654@1\|root,KOG1298@2759\|Eukaryota
EC	1.14.14.17
Description	squalene monooxygenase activity
COG category	CH
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1518	Gchil1518	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 740066..741466 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1518.t1.start1	Gchil1518.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 740066..740068 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1518.t1.CDS1	Gchil1518.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 740066..741466 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1518.t1.exon1	Gchil1518.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 740066..741466 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1518.t1.stop1	Gchil1518.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 741464..741466 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1518.t1	Gchil1518.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 740066..741466 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:740066..741466+
coding sequence from alignment at tig00004403_pilon:740066..741466+

mRNA sequence

>Gchil1518.t1 ID=Gchil1518.t1|Name=Gchil1518.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=467bp
MPSASQHDVIVVGAGVAGGALINCLARDGRRVLCVERHLRHLDGSLTEPS
RIVGELLQPGGCEKLRQLGLAAALSGIDAQPVHGYAMFLDGRSESVSYTE
PSHIQHVGYSFHNGRFLKRLRQIALQHQNVTLVQGNVVSLEKDSLGKVIG
VCYRDEQKRLTRAYAHLTIACDGCSSSLRKRAAAEHNVSVYSNFHGLLLE
MSDVPFPNHGHVVLADPSPVLFYRISSTEVRCLVDISSEYTGDVSDYMLT
VVMPQIPLQFQKPFETAVNNGKSRMMPNRVMPAPADIIPGALLLGDAFNM
RHPLTGGGMTVALSDVTIIRDLLKQVPDLSDVDTVSRKLDVFYTARKPMS
TTINILANALYTLFCAKGDPALKDMRDACFEYLGRGGRMTHDPISMLGGI
KPQRFLLVTHFFAVALYGCGRAMLPFPTPDRLGKAWSIFRASFNVIKPLI
DAENLWPLSWLPISAL*

spliced messenger RNA

>Gchil1518.t1 ID=Gchil1518.t1|Name=Gchil1518.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00004403_pilon:740066..741466+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCCGCGTCACAGCACGACGTCATCGTCGTCGGCGCCGGCGTTGC
CGGCGGTGCCTTGATTAACTGTCTTGCGCGCGATGGGCGCCGCGTCCTGT
GCGTCGAGCGCCACTTGCGCCACTTGGATGGCTCACTGACCGAGCCGTCG
CGCATTGTCGGAGAGCTTTTGCAGCCCGGCGGCTGTGAGAAGCTCCGACA
GCTCGGACTCGCCGCCGCGCTCTCCGGCATTGACGCACAGCCCGTACATG
GCTACGCCATGTTTCTTGACGGCCGTTCCGAATCCGTCTCGTACACAGAG
CCATCGCACATCCAACACGTTGGCTACAGTTTTCACAACGGCCGCTTCTT
GAAGAGACTTCGTCAAATTGCGCTTCAACACCAAAACGTTACCCTCGTGC
AAGGCAATGTTGTGTCGCTTGAGAAAGATTCCCTGGGAAAAGTTATCGGC
GTCTGCTACCGAGATGAGCAAAAACGTCTCACGCGCGCTTACGCACATCT
TACCATTGCGTGCGATGGATGTTCAAGCAGCTTGCGCAAGCGAGCTGCTG
CCGAACACAACGTCTCGGTCTACTCCAACTTTCATGGCTTGCTGCTCGAA
ATGTCCGACGTGCCATTCCCGAACCACGGCCATGTCGTGCTTGCCGACCC
TTCGCCCGTTCTCTTCTACCGCATAAGTAGCACTGAAGTTCGCTGTCTTG
TCGACATTTCGAGCGAGTACACTGGAGATGTATCCGATTACATGTTGACC
GTCGTAATGCCCCAAATTCCGCTGCAGTTTCAAAAGCCGTTTGAGACCGC
CGTCAACAACGGCAAATCCAGAATGATGCCCAATCGCGTCATGCCTGCCC
CGGCTGACATCATTCCTGGAGCGCTATTGCTGGGCGATGCCTTCAACATG
CGTCACCCGCTCACGGGTGGTGGCATGACAGTTGCCTTGTCGGATGTTAC
CATTATTCGCGACTTGCTAAAACAAGTGCCTGATTTATCCGATGTTGACA
CCGTTTCACGGAAACTTGACGTGTTCTACACTGCTCGCAAACCCATGTCA
ACCACGATAAACATTCTTGCCAATGCATTGTATACACTATTTTGCGCCAA
GGGTGACCCCGCCCTCAAGGATATGAGAGATGCTTGTTTCGAGTATCTTG
GCAGGGGTGGAAGGATGACGCATGATCCCATAAGCATGCTAGGTGGAATC
AAACCACAGCGATTTCTCCTTGTCACTCACTTCTTCGCTGTGGCGCTGTA
CGGTTGTGGCCGGGCAATGTTGCCGTTTCCCACTCCCGATCGACTGGGAA
AGGCTTGGAGCATTTTCAGGGCTTCTTTCAACGTTATCAAGCCCTTGATA
GACGCAGAAAATCTTTGGCCATTGTCGTGGCTGCCTATTTCGGCCTTGTA
G

protein sequence of Gchil1518.t1

>Gchil1518.t1 ID=Gchil1518.t1|Name=Gchil1518.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=467bp
MPSASQHDVIVVGAGVAGGALINCLARDGRRVLCVERHLRHLDGSLTEPS
RIVGELLQPGGCEKLRQLGLAAALSGIDAQPVHGYAMFLDGRSESVSYTE
PSHIQHVGYSFHNGRFLKRLRQIALQHQNVTLVQGNVVSLEKDSLGKVIG
VCYRDEQKRLTRAYAHLTIACDGCSSSLRKRAAAEHNVSVYSNFHGLLLE
MSDVPFPNHGHVVLADPSPVLFYRISSTEVRCLVDISSEYTGDVSDYMLT
VVMPQIPLQFQKPFETAVNNGKSRMMPNRVMPAPADIIPGALLLGDAFNM
RHPLTGGGMTVALSDVTIIRDLLKQVPDLSDVDTVSRKLDVFYTARKPMS
TTINILANALYTLFCAKGDPALKDMRDACFEYLGRGGRMTHDPISMLGGI
KPQRFLLVTHFFAVALYGCGRAMLPFPTPDRLGKAWSIFRASFNVIKPLI
DAENLWPLSWLPISAL*

mRNA from alignment at tig00004403_pilon:740066..741466+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1518.t1 ID=Gchil1518.t1|Name=Gchil1518.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00004403_pilon:740066..741466+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTCCGCGTCACAGCACGACGTCATCGTCGTCGGCGCCGGCGTTGC
CGGCGGTGCCTTGATTAACTGTCTTGCGCGCGATGGGCGCCGCGTCCTGT
GCGTCGAGCGCCACTTGCGCCACTTGGATGGCTCACTGACCGAGCCGTCG
CGCATTGTCGGAGAGCTTTTGCAGCCCGGCGGCTGTGAGAAGCTCCGACA
GCTCGGACTCGCCGCCGCGCTCTCCGGCATTGACGCACAGCCCGTACATG
GCTACGCCATGTTTCTTGACGGCCGTTCCGAATCCGTCTCGTACACAGAG
CCATCGCACATCCAACACGTTGGCTACAGTTTTCACAACGGCCGCTTCTT
GAAGAGACTTCGTCAAATTGCGCTTCAACACCAAAACGTTACCCTCGTGC
AAGGCAATGTTGTGTCGCTTGAGAAAGATTCCCTGGGAAAAGTTATCGGC
GTCTGCTACCGAGATGAGCAAAAACGTCTCACGCGCGCTTACGCACATCT
TACCATTGCGTGCGATGGATGTTCAAGCAGCTTGCGCAAGCGAGCTGCTG
CCGAACACAACGTCTCGGTCTACTCCAACTTTCATGGCTTGCTGCTCGAA
ATGTCCGACGTGCCATTCCCGAACCACGGCCATGTCGTGCTTGCCGACCC
TTCGCCCGTTCTCTTCTACCGCATAAGTAGCACTGAAGTTCGCTGTCTTG
TCGACATTTCGAGCGAGTACACTGGAGATGTATCCGATTACATGTTGACC
GTCGTAATGCCCCAAATTCCGCTGCAGTTTCAAAAGCCGTTTGAGACCGC
CGTCAACAACGGCAAATCCAGAATGATGCCCAATCGCGTCATGCCTGCCC
CGGCTGACATCATTCCTGGAGCGCTATTGCTGGGCGATGCCTTCAACATG
CGTCACCCGCTCACGGGTGGTGGCATGACAGTTGCCTTGTCGGATGTTAC
CATTATTCGCGACTTGCTAAAACAAGTGCCTGATTTATCCGATGTTGACA
CCGTTTCACGGAAACTTGACGTGTTCTACACTGCTCGCAAACCCATGTCA
ACCACGATAAACATTCTTGCCAATGCATTGTATACACTATTTTGCGCCAA
GGGTGACCCCGCCCTCAAGGATATGAGAGATGCTTGTTTCGAGTATCTTG
GCAGGGGTGGAAGGATGACGCATGATCCCATAAGCATGCTAGGTGGAATC
AAACCACAGCGATTTCTCCTTGTCACTCACTTCTTCGCTGTGGCGCTGTA
CGGTTGTGGCCGGGCAATGTTGCCGTTTCCCACTCCCGATCGACTGGGAA
AGGCTTGGAGCATTTTCAGGGCTTCTTTCAACGTTATCAAGCCCTTGATA
GACGCAGAAAATCTTTGGCCATTGTCGTGGCTGCCTATTTCGGCCTTGTA
G

Coding sequence (CDS) from alignment at tig00004403_pilon:740066..741466+

>Gchil1518.t1 ID=Gchil1518.t1|Name=Gchil1518.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1401bp|location=Sequence derived from alignment at tig00004403_pilon:740066..741466+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTCCGCGTCACAGCACGACGTCATCGTCGTCGGCGCCGGCGTTGC
CGGCGGTGCCTTGATTAACTGTCTTGCGCGCGATGGGCGCCGCGTCCTGT
GCGTCGAGCGCCACTTGCGCCACTTGGATGGCTCACTGACCGAGCCGTCG
CGCATTGTCGGAGAGCTTTTGCAGCCCGGCGGCTGTGAGAAGCTCCGACA
GCTCGGACTCGCCGCCGCGCTCTCCGGCATTGACGCACAGCCCGTACATG
GCTACGCCATGTTTCTTGACGGCCGTTCCGAATCCGTCTCGTACACAGAG
CCATCGCACATCCAACACGTTGGCTACAGTTTTCACAACGGCCGCTTCTT
GAAGAGACTTCGTCAAATTGCGCTTCAACACCAAAACGTTACCCTCGTGC
AAGGCAATGTTGTGTCGCTTGAGAAAGATTCCCTGGGAAAAGTTATCGGC
GTCTGCTACCGAGATGAGCAAAAACGTCTCACGCGCGCTTACGCACATCT
TACCATTGCGTGCGATGGATGTTCAAGCAGCTTGCGCAAGCGAGCTGCTG
CCGAACACAACGTCTCGGTCTACTCCAACTTTCATGGCTTGCTGCTCGAA
ATGTCCGACGTGCCATTCCCGAACCACGGCCATGTCGTGCTTGCCGACCC
TTCGCCCGTTCTCTTCTACCGCATAAGTAGCACTGAAGTTCGCTGTCTTG
TCGACATTTCGAGCGAGTACACTGGAGATGTATCCGATTACATGTTGACC
GTCGTAATGCCCCAAATTCCGCTGCAGTTTCAAAAGCCGTTTGAGACCGC
CGTCAACAACGGCAAATCCAGAATGATGCCCAATCGCGTCATGCCTGCCC
CGGCTGACATCATTCCTGGAGCGCTATTGCTGGGCGATGCCTTCAACATG
CGTCACCCGCTCACGGGTGGTGGCATGACAGTTGCCTTGTCGGATGTTAC
CATTATTCGCGACTTGCTAAAACAAGTGCCTGATTTATCCGATGTTGACA
CCGTTTCACGGAAACTTGACGTGTTCTACACTGCTCGCAAACCCATGTCA
ACCACGATAAACATTCTTGCCAATGCATTGTATACACTATTTTGCGCCAA
GGGTGACCCCGCCCTCAAGGATATGAGAGATGCTTGTTTCGAGTATCTTG
GCAGGGGTGGAAGGATGACGCATGATCCCATAAGCATGCTAGGTGGAATC
AAACCACAGCGATTTCTCCTTGTCACTCACTTCTTCGCTGTGGCGCTGTA
CGGTTGTGGCCGGGCAATGTTGCCGTTTCCCACTCCCGATCGACTGGGAA
AGGCTTGGAGCATTTTCAGGGCTTCTTTCAACGTTATCAAGCCCTTGATA
GACGCAGAAAATCTTTGGCCATTGTCGTGGCTGCCTATTTCGGCCTTGTA
G