Gchil1833.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1833.t1
Unique NameGchil1833.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length396
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2818704..2819891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0203990
PFAMsPAP2
Max annot lvl554915|Amoebozoa
Evalue1.03e-41
EggNOG OGs2C635@1|root,2SJ3Z@2759|Eukaryota,3XB0E@554915|Amoebozoa
DescriptionPAP2 superfamily
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1833Gchil1833Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2818704..2819891 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1833.t1.start1Gchil1833.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2818704..2818706 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1833.t1.CDS1Gchil1833.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2818704..2819891 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1833.t1.exon1Gchil1833.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2818704..2819891 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1833.t1.stop1Gchil1833.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2819889..2819891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1833.t1Gchil1833.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2818704..2819891 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1833.t1 ID=Gchil1833.t1|Name=Gchil1833.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=396bp
MQRPGSSPSSGAAERPVSPSPATSNHTAAPPQSAAKHPSSQSHCAPRSAR
FMLPPRTRFQLPFPSLLERGFAAFDDRVVALCQRRTDGLVHLVSMALTFF
TSIEVSLVAPPTLYALGYDMAAGLCSSVLLVLGIVSQVPKKFIFRPRPWM
VGRALPIRQDRTSSFPSRAVVCAVVFSWLMAQSLHLEGLLPHPLNPLKLW
LAILAAASLTAFARINVGAHYPSDTILGFVLGVFVITCGSRLERRVWHRA
CPLSAAYATPHTASFTSYTQLPAATPPRIMAAMTLLAYAMTFVSVQGFWV
KCSYVYGLLMACATFRASYLCPHEHARFAHLMENGSARQHLGALATFATL
LLFGMFTRAKKGVFRIVSFSLIYVGTLLALIVWRLAVQRTALGHT*
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spliced messenger RNA

>Gchil1833.t1 ID=Gchil1833.t1|Name=Gchil1833.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00004403_pilon:2818704..2819891+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGCCCCGGCTCCAGCCCGTCGTCAGGCGCCGCCGAGCGTCCCGT
CTCCCCGTCGCCAGCCACCTCCAACCACACCGCCGCCCCGCCGCAAAGCG
CCGCAAAGCATCCGTCGTCCCAGTCGCACTGCGCCCCCCGCTCGGCCCGC
TTCATGTTACCGCCGCGCACGCGCTTCCAACTGCCCTTCCCCTCACTCTT
GGAGCGTGGTTTTGCCGCCTTTGACGATCGAGTCGTCGCCTTGTGTCAGC
GTCGCACCGACGGGCTCGTGCATCTCGTCAGCATGGCCCTCACTTTCTTC
ACCTCCATCGAGGTGTCGCTCGTCGCCCCCCCTACGCTTTACGCCCTCGG
CTACGACATGGCCGCCGGTCTATGCTCCTCTGTGCTGCTCGTGCTCGGCA
TCGTCAGCCAGGTTCCCAAGAAATTCATCTTCCGCCCGCGCCCTTGGATG
GTCGGCCGCGCCCTTCCCATCCGCCAAGACCGCACCTCCAGCTTTCCATC
GCGCGCCGTCGTGTGTGCCGTCGTCTTTTCGTGGCTCATGGCTCAATCGC
TGCACTTGGAGGGTCTGTTGCCTCACCCGCTCAATCCGCTCAAATTATGG
CTTGCCATTCTCGCCGCCGCCTCGCTCACTGCCTTTGCGCGCATCAACGT
CGGCGCTCATTACCCCTCCGACACCATTCTGGGCTTTGTGCTGGGCGTCT
TTGTCATCACCTGTGGCAGTCGTCTGGAGCGCCGCGTGTGGCATCGCGCC
TGCCCGCTTTCCGCTGCTTACGCCACTCCGCACACCGCCTCCTTCACCAG
CTACACCCAGCTGCCGGCAGCCACCCCGCCCCGTATCATGGCCGCCATGA
CACTACTGGCTTACGCCATGACCTTCGTCTCTGTGCAGGGCTTTTGGGTC
AAATGCAGCTACGTTTACGGCCTCCTCATGGCATGCGCTACCTTTCGCGC
CTCGTATCTGTGCCCCCACGAGCACGCGCGCTTTGCGCACCTCATGGAAA
ATGGATCGGCGCGCCAGCATCTGGGCGCGCTTGCTACCTTCGCCACCCTG
CTTTTGTTTGGCATGTTCACGCGCGCCAAGAAAGGTGTCTTTCGCATCGT
CTCCTTCTCGCTCATTTACGTCGGCACCCTTCTTGCGCTCATCGTGTGGA
GACTTGCTGTGCAACGCACCGCCCTTGGCCACACGTAA
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protein sequence of Gchil1833.t1

>Gchil1833.t1 ID=Gchil1833.t1|Name=Gchil1833.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=396bp
MQRPGSSPSSGAAERPVSPSPATSNHTAAPPQSAAKHPSSQSHCAPRSAR
FMLPPRTRFQLPFPSLLERGFAAFDDRVVALCQRRTDGLVHLVSMALTFF
TSIEVSLVAPPTLYALGYDMAAGLCSSVLLVLGIVSQVPKKFIFRPRPWM
VGRALPIRQDRTSSFPSRAVVCAVVFSWLMAQSLHLEGLLPHPLNPLKLW
LAILAAASLTAFARINVGAHYPSDTILGFVLGVFVITCGSRLERRVWHRA
CPLSAAYATPHTASFTSYTQLPAATPPRIMAAMTLLAYAMTFVSVQGFWV
KCSYVYGLLMACATFRASYLCPHEHARFAHLMENGSARQHLGALATFATL
LLFGMFTRAKKGVFRIVSFSLIYVGTLLALIVWRLAVQRTALGHT*
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mRNA from alignment at tig00004403_pilon:2818704..2819891+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1833.t1 ID=Gchil1833.t1|Name=Gchil1833.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00004403_pilon:2818704..2819891+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCGCCCCGGCTCCAGCCCGTCGTCAGGCGCCGCCGAGCGTCCCGT
CTCCCCGTCGCCAGCCACCTCCAACCACACCGCCGCCCCGCCGCAAAGCG
CCGCAAAGCATCCGTCGTCCCAGTCGCACTGCGCCCCCCGCTCGGCCCGC
TTCATGTTACCGCCGCGCACGCGCTTCCAACTGCCCTTCCCCTCACTCTT
GGAGCGTGGTTTTGCCGCCTTTGACGATCGAGTCGTCGCCTTGTGTCAGC
GTCGCACCGACGGGCTCGTGCATCTCGTCAGCATGGCCCTCACTTTCTTC
ACCTCCATCGAGGTGTCGCTCGTCGCCCCCCCTACGCTTTACGCCCTCGG
CTACGACATGGCCGCCGGTCTATGCTCCTCTGTGCTGCTCGTGCTCGGCA
TCGTCAGCCAGGTTCCCAAGAAATTCATCTTCCGCCCGCGCCCTTGGATG
GTCGGCCGCGCCCTTCCCATCCGCCAAGACCGCACCTCCAGCTTTCCATC
GCGCGCCGTCGTGTGTGCCGTCGTCTTTTCGTGGCTCATGGCTCAATCGC
TGCACTTGGAGGGTCTGTTGCCTCACCCGCTCAATCCGCTCAAATTATGG
CTTGCCATTCTCGCCGCCGCCTCGCTCACTGCCTTTGCGCGCATCAACGT
CGGCGCTCATTACCCCTCCGACACCATTCTGGGCTTTGTGCTGGGCGTCT
TTGTCATCACCTGTGGCAGTCGTCTGGAGCGCCGCGTGTGGCATCGCGCC
TGCCCGCTTTCCGCTGCTTACGCCACTCCGCACACCGCCTCCTTCACCAG
CTACACCCAGCTGCCGGCAGCCACCCCGCCCCGTATCATGGCCGCCATGA
CACTACTGGCTTACGCCATGACCTTCGTCTCTGTGCAGGGCTTTTGGGTC
AAATGCAGCTACGTTTACGGCCTCCTCATGGCATGCGCTACCTTTCGCGC
CTCGTATCTGTGCCCCCACGAGCACGCGCGCTTTGCGCACCTCATGGAAA
ATGGATCGGCGCGCCAGCATCTGGGCGCGCTTGCTACCTTCGCCACCCTG
CTTTTGTTTGGCATGTTCACGCGCGCCAAGAAAGGTGTCTTTCGCATCGT
CTCCTTCTCGCTCATTTACGTCGGCACCCTTCTTGCGCTCATCGTGTGGA
GACTTGCTGTGCAACGCACCGCCCTTGGCCACACGTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:2818704..2819891+

>Gchil1833.t1 ID=Gchil1833.t1|Name=Gchil1833.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1188bp|location=Sequence derived from alignment at tig00004403_pilon:2818704..2819891+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCGCCCCGGCTCCAGCCCGTCGTCAGGCGCCGCCGAGCGTCCCGT
CTCCCCGTCGCCAGCCACCTCCAACCACACCGCCGCCCCGCCGCAAAGCG
CCGCAAAGCATCCGTCGTCCCAGTCGCACTGCGCCCCCCGCTCGGCCCGC
TTCATGTTACCGCCGCGCACGCGCTTCCAACTGCCCTTCCCCTCACTCTT
GGAGCGTGGTTTTGCCGCCTTTGACGATCGAGTCGTCGCCTTGTGTCAGC
GTCGCACCGACGGGCTCGTGCATCTCGTCAGCATGGCCCTCACTTTCTTC
ACCTCCATCGAGGTGTCGCTCGTCGCCCCCCCTACGCTTTACGCCCTCGG
CTACGACATGGCCGCCGGTCTATGCTCCTCTGTGCTGCTCGTGCTCGGCA
TCGTCAGCCAGGTTCCCAAGAAATTCATCTTCCGCCCGCGCCCTTGGATG
GTCGGCCGCGCCCTTCCCATCCGCCAAGACCGCACCTCCAGCTTTCCATC
GCGCGCCGTCGTGTGTGCCGTCGTCTTTTCGTGGCTCATGGCTCAATCGC
TGCACTTGGAGGGTCTGTTGCCTCACCCGCTCAATCCGCTCAAATTATGG
CTTGCCATTCTCGCCGCCGCCTCGCTCACTGCCTTTGCGCGCATCAACGT
CGGCGCTCATTACCCCTCCGACACCATTCTGGGCTTTGTGCTGGGCGTCT
TTGTCATCACCTGTGGCAGTCGTCTGGAGCGCCGCGTGTGGCATCGCGCC
TGCCCGCTTTCCGCTGCTTACGCCACTCCGCACACCGCCTCCTTCACCAG
CTACACCCAGCTGCCGGCAGCCACCCCGCCCCGTATCATGGCCGCCATGA
CACTACTGGCTTACGCCATGACCTTCGTCTCTGTGCAGGGCTTTTGGGTC
AAATGCAGCTACGTTTACGGCCTCCTCATGGCATGCGCTACCTTTCGCGC
CTCGTATCTGTGCCCCCACGAGCACGCGCGCTTTGCGCACCTCATGGAAA
ATGGATCGGCGCGCCAGCATCTGGGCGCGCTTGCTACCTTCGCCACCCTG
CTTTTGTTTGGCATGTTCACGCGCGCCAAGAAAGGTGTCTTTCGCATCGT
CTCCTTCTCGCTCATTTACGTCGGCACCCTTCTTGCGCTCATCGTGTGGA
GACTTGCTGTGCAACGCACCGCCCTTGGCCACACGTAA
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