Gchil1614.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1614.t1
Unique NameGchil1614.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length267
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1168782..1169655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706460.1
Max annot lvl2759|Eukaryota
Evalue2.7e-67
EggNOG OGs28Q09@1|root,2QWNX@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1614Gchil1614Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1168782..1169655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1614.t1Gchil1614.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1168782..1169655 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1614.t1.stop1Gchil1614.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1168782..1168784 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1614.t1.CDS1Gchil1614.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1168782..1169166 -
Gchil1614.t1.CDS2Gchil1614.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1169240..1169655 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1614.t1.exon1Gchil1614.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1168782..1169166 -
Gchil1614.t1.exon2Gchil1614.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1169240..1169655 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1614.t1.intron1Gchil1614.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1169167..1169239 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1614.t1.start1Gchil1614.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1169653..1169655 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1614.t1 ID=Gchil1614.t1|Name=Gchil1614.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=267bp
MADKSFIYALDFDGVICDSAHESSRTALLAAKAQWPHLQLPSSPNETFPE
SLVQALRSVRPVIETGYENVVLGRMVAEADEQKLEEQFVQPILKDWPTIR
DARMLEWGLKKEDLIQVFGSVRDKWITEDQLSWLNANKFFPDVVSAINSS
SGPVFIITTKQTRFAHLLLQHNNATIPLERIYGLEKGSKISVLKEITAMP
EHQGKQVVFVEDRYETLEKVSLSMLGQPLQLFLATWGYNTPQICEVAEKH
PFITLLDLPTFVNKFQ*
back to top

spliced messenger RNA

>Gchil1614.t1 ID=Gchil1614.t1|Name=Gchil1614.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=801bp|location=Sequence derived from alignment at tig00004403_pilon:1168782..1169655- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGATAAGTCATTCATCTACGCGCTTGATTTCGACGGGGTCATCTG
TGACAGTGCGCACGAATCATCTCGCACCGCACTGCTCGCGGCCAAGGCGC
AATGGCCTCATTTACAACTTCCATCCTCTCCGAACGAAACCTTTCCAGAG
AGTTTGGTTCAGGCGCTGCGTTCTGTACGTCCAGTCATTGAAACAGGATA
TGAGAACGTTGTCCTGGGTCGGATGGTTGCGGAAGCCGATGAACAAAAAT
TGGAGGAGCAATTCGTTCAGCCAATTTTGAAAGATTGGCCTACTATCCGT
GATGCTCGTATGCTTGAATGGGGCCTCAAGAAAGAAGATCTCATTCAAGT
GTTTGGAAGTGTTCGGGATAAATGGATAACAGAAGATCAGTTATCTTGGC
TTAATGCGAACAAGTTTTTTCCAGATGTGGTGAGCGCCATCAACTCATCT
TCGGGACCTGTTTTCATCATCACCACCAAGCAAACTCGGTTTGCTCATTT
GCTACTCCAACACAACAATGCCACAATTCCCCTGGAACGCATTTACGGTC
TGGAAAAGGGCTCAAAGATATCTGTCTTGAAGGAGATAACCGCCATGCCT
GAACACCAAGGTAAGCAAGTTGTGTTCGTGGAAGATCGTTACGAAACTTT
AGAAAAAGTTTCTCTGAGCATGCTAGGCCAGCCTTTACAACTCTTCTTAG
CTACATGGGGCTATAATACTCCACAGATTTGCGAAGTAGCCGAAAAGCAC
CCGTTTATTACACTTCTCGATCTCCCAACCTTCGTCAACAAGTTTCAGTG
A
back to top

protein sequence of Gchil1614.t1

>Gchil1614.t1 ID=Gchil1614.t1|Name=Gchil1614.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=267bp
MADKSFIYALDFDGVICDSAHESSRTALLAAKAQWPHLQLPSSPNETFPE
SLVQALRSVRPVIETGYENVVLGRMVAEADEQKLEEQFVQPILKDWPTIR
DARMLEWGLKKEDLIQVFGSVRDKWITEDQLSWLNANKFFPDVVSAINSS
SGPVFIITTKQTRFAHLLLQHNNATIPLERIYGLEKGSKISVLKEITAMP
EHQGKQVVFVEDRYETLEKVSLSMLGQPLQLFLATWGYNTPQICEVAEKH
PFITLLDLPTFVNKFQ*
back to top

mRNA from alignment at tig00004403_pilon:1168782..1169655-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1614.t1 ID=Gchil1614.t1|Name=Gchil1614.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=874bp|location=Sequence derived from alignment at tig00004403_pilon:1168782..1169655- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGATAAGTCATTCATCTACGCGCTTGATTTCGACGGGGTCATCTG
TGACAGTGCGCACGAATCATCTCGCACCGCACTGCTCGCGGCCAAGGCGC
AATGGCCTCATTTACAACTTCCATCCTCTCCGAACGAAACCTTTCCAGAG
AGTTTGGTTCAGGCGCTGCGTTCTGTACGTCCAGTCATTGAAACAGGATA
TGAGAACGTTGTCCTGGGTCGGATGGTTGCGGAAGCCGATGAACAAAAAT
TGGAGGAGCAATTCGTTCAGCCAATTTTGAAAGATTGGCCTACTATCCGT
GATGCTCGTATGCTTGAATGGGGCCTCAAGAAAGAAGATCTCATTCAAGT
GTTTGGAAGTGTTCGGGATAAATGGATAACAGAAGATCAGTTATCTTGGC
TTAATGCGAACAAGTTGTACGTAAATATGAGTTATTCAGTCATCATTCTT
TGATCTTTCACGGACAAATCTAACCTTTTTTTGGCTCAGTTTTCCAGATG
TGGTGAGCGCCATCAACTCATCTTCGGGACCTGTTTTCATCATCACCACC
AAGCAAACTCGGTTTGCTCATTTGCTACTCCAACACAACAATGCCACAAT
TCCCCTGGAACGCATTTACGGTCTGGAAAAGGGCTCAAAGATATCTGTCT
TGAAGGAGATAACCGCCATGCCTGAACACCAAGGTAAGCAAGTTGTGTTC
GTGGAAGATCGTTACGAAACTTTAGAAAAAGTTTCTCTGAGCATGCTAGG
CCAGCCTTTACAACTCTTCTTAGCTACATGGGGCTATAATACTCCACAGA
TTTGCGAAGTAGCCGAAAAGCACCCGTTTATTACACTTCTCGATCTCCCA
ACCTTCGTCAACAAGTTTCAGTGA
back to top

Coding sequence (CDS) from alignment at tig00004403_pilon:1168782..1169655-

>Gchil1614.t1 ID=Gchil1614.t1|Name=Gchil1614.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=801bp|location=Sequence derived from alignment at tig00004403_pilon:1168782..1169655- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGATAAGTCATTCATCTACGCGCTTGATTTCGACGGGGTCATCTG
TGACAGTGCGCACGAATCATCTCGCACCGCACTGCTCGCGGCCAAGGCGC
AATGGCCTCATTTACAACTTCCATCCTCTCCGAACGAAACCTTTCCAGAG
AGTTTGGTTCAGGCGCTGCGTTCTGTACGTCCAGTCATTGAAACAGGATA
TGAGAACGTTGTCCTGGGTCGGATGGTTGCGGAAGCCGATGAACAAAAAT
TGGAGGAGCAATTCGTTCAGCCAATTTTGAAAGATTGGCCTACTATCCGT
GATGCTCGTATGCTTGAATGGGGCCTCAAGAAAGAAGATCTCATTCAAGT
GTTTGGAAGTGTTCGGGATAAATGGATAACAGAAGATCAGTTATCTTGGC
TTAATGCGAACAAGTTTTTTCCAGATGTGGTGAGCGCCATCAACTCATCT
TCGGGACCTGTTTTCATCATCACCACCAAGCAAACTCGGTTTGCTCATTT
GCTACTCCAACACAACAATGCCACAATTCCCCTGGAACGCATTTACGGTC
TGGAAAAGGGCTCAAAGATATCTGTCTTGAAGGAGATAACCGCCATGCCT
GAACACCAAGGTAAGCAAGTTGTGTTCGTGGAAGATCGTTACGAAACTTT
AGAAAAAGTTTCTCTGAGCATGCTAGGCCAGCCTTTACAACTCTTCTTAG
CTACATGGGGCTATAATACTCCACAGATTTGCGAAGTAGCCGAAAAGCAC
CCGTTTATTACACTTCTCGATCTCCCAACCTTCGTCAACAAGTTTCAGTG
A
back to top