Gchil1526.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1526.t1
Unique NameGchil1526.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length465
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:785038..786432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0205192
PFAMsCyclin
Max annot lvl2759|Eukaryota
Evalue1.08e-15
EggNOG OGsKOG1674@1|root,KOG1674@2759|Eukaryota
DescriptionCyclin-dependent protein kinase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1526Gchil1526Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 785038..786432 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1526.t1.stop1Gchil1526.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 785038..785040 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1526.t1.CDS1Gchil1526.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 785038..786432 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1526.t1.exon1Gchil1526.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 785038..786432 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1526.t1.start1Gchil1526.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 786430..786432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1526.t1Gchil1526.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 785038..786432 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1526.t1 ID=Gchil1526.t1|Name=Gchil1526.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=465bp
MPPATATAPPPSRPTRPTKRRLPPATHPDRVAAPCLKRPRPAHTTTTPPK
SATISLVSPPESRTPPSPPPSPLLPCSPSPSPSASPSPLLPPPRRSARKP
RFSSLSNTCSASSAAAAAAAAAAAAAARVVDVITSPRSPRSPRFSPSAAR
LREIQQQPHFRYEAAASHPSSPSAHCVEHSPQFSPGAVSPPIGAASPPPP
PPPPPPPPPRTHHQWCERDVVTAVCALLHQWCRGTESITGHHASPQHQLK
YHAFFSQYRQPFELPFYVKRLVQFCNCSLSAFIVALTFVHRVQTECNALR
VSEMNVHRLFCTALVLAIKNVDDELFSNAYYARVAGISCEELNELEVTML
HVLRWDAACPLLRYQLMERRLLQTLALETACLHAEERGYKQAYRPRAYGC
EYAYGQHDEDEDGHLDEDGHLDEEGHLDLDEHDGDLDEHDGDLDEHDGDL
DEDVVGEPRVTCAA*
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spliced messenger RNA

>Gchil1526.t1 ID=Gchil1526.t1|Name=Gchil1526.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00004403_pilon:785038..786432- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCCGCAACCGCCACAGCCCCGCCGCCCTCGCGCCCCACGCGCCC
CACCAAGCGTCGCCTCCCGCCCGCCACCCACCCGGATCGCGTCGCCGCCC
CCTGCCTCAAGCGCCCGCGTCCAGCGCACACCACCACCACGCCGCCCAAG
TCGGCCACCATTTCGCTCGTCAGCCCACCCGAGTCGCGCACGCCCCCATC
CCCGCCCCCGTCCCCCTTACTACCGTGTTCGCCGTCGCCGTCTCCATCCG
CTTCACCGTCGCCGCTGCTGCCGCCGCCGCGCCGCAGCGCGCGCAAGCCG
CGCTTCTCGTCGCTTTCCAACACTTGCTCTGCTTCTTCTGCTGCCGCTGC
TGCCGCTGCTGCCGCTGCTGCTGCTGCCGCACGCGTCGTCGACGTCATTA
CGTCGCCGCGTTCGCCGCGTTCGCCGCGCTTCTCTCCGTCTGCGGCGCGT
CTGCGCGAGATACAGCAACAGCCGCACTTTCGCTATGAGGCCGCTGCGTC
GCACCCTTCCTCCCCATCCGCACACTGTGTTGAGCACTCGCCGCAATTCT
CGCCTGGCGCTGTGTCCCCGCCCATTGGTGCTGCGTCGCCGCCGCCGCCA
CCGCCGCCGCCGCCGCCGCCGCCGCCGCGCACGCATCATCAGTGGTGCGA
GCGCGATGTCGTCACCGCCGTGTGCGCCCTGTTGCACCAGTGGTGTCGTG
GCACCGAGTCAATCACGGGCCACCACGCGTCACCGCAGCACCAGCTCAAG
TACCACGCGTTCTTCTCGCAGTACCGCCAGCCGTTTGAGCTGCCCTTTTA
CGTCAAGCGTCTGGTGCAGTTTTGCAACTGCTCGTTATCGGCCTTCATCG
TCGCGCTCACGTTTGTGCACCGCGTGCAGACCGAGTGCAACGCGTTGCGC
GTGAGCGAGATGAACGTACACCGACTGTTTTGTACCGCGCTCGTGCTCGC
CATCAAGAACGTTGACGATGAGCTGTTTTCCAACGCGTACTACGCGCGTG
TGGCTGGCATCTCGTGTGAAGAGCTCAATGAGCTGGAAGTGACCATGCTG
CACGTGTTGCGCTGGGACGCGGCGTGCCCGTTGTTGCGCTACCAGCTCAT
GGAGAGACGGCTGTTGCAAACGCTGGCGCTCGAGACGGCGTGCCTGCACG
CCGAGGAGCGTGGCTATAAGCAAGCCTACCGGCCTCGCGCCTATGGCTGT
GAGTACGCGTACGGCCAGCACGACGAAGACGAAGACGGTCACTTGGACGA
AGACGGTCACTTGGACGAAGAGGGCCACTTGGACCTGGACGAGCACGACG
GCGATTTGGACGAGCACGACGGCGATTTGGACGAGCACGACGGCGATTTG
GACGAGGACGTCGTCGGTGAGCCGCGTGTCACGTGCGCTGCGTGA
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protein sequence of Gchil1526.t1

>Gchil1526.t1 ID=Gchil1526.t1|Name=Gchil1526.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=465bp
MPPATATAPPPSRPTRPTKRRLPPATHPDRVAAPCLKRPRPAHTTTTPPK
SATISLVSPPESRTPPSPPPSPLLPCSPSPSPSASPSPLLPPPRRSARKP
RFSSLSNTCSASSAAAAAAAAAAAAAARVVDVITSPRSPRSPRFSPSAAR
LREIQQQPHFRYEAAASHPSSPSAHCVEHSPQFSPGAVSPPIGAASPPPP
PPPPPPPPPRTHHQWCERDVVTAVCALLHQWCRGTESITGHHASPQHQLK
YHAFFSQYRQPFELPFYVKRLVQFCNCSLSAFIVALTFVHRVQTECNALR
VSEMNVHRLFCTALVLAIKNVDDELFSNAYYARVAGISCEELNELEVTML
HVLRWDAACPLLRYQLMERRLLQTLALETACLHAEERGYKQAYRPRAYGC
EYAYGQHDEDEDGHLDEDGHLDEEGHLDLDEHDGDLDEHDGDLDEHDGDL
DEDVVGEPRVTCAA*
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mRNA from alignment at tig00004403_pilon:785038..786432-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1526.t1 ID=Gchil1526.t1|Name=Gchil1526.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00004403_pilon:785038..786432- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCCCGCAACCGCCACAGCCCCGCCGCCCTCGCGCCCCACGCGCCC
CACCAAGCGTCGCCTCCCGCCCGCCACCCACCCGGATCGCGTCGCCGCCC
CCTGCCTCAAGCGCCCGCGTCCAGCGCACACCACCACCACGCCGCCCAAG
TCGGCCACCATTTCGCTCGTCAGCCCACCCGAGTCGCGCACGCCCCCATC
CCCGCCCCCGTCCCCCTTACTACCGTGTTCGCCGTCGCCGTCTCCATCCG
CTTCACCGTCGCCGCTGCTGCCGCCGCCGCGCCGCAGCGCGCGCAAGCCG
CGCTTCTCGTCGCTTTCCAACACTTGCTCTGCTTCTTCTGCTGCCGCTGC
TGCCGCTGCTGCCGCTGCTGCTGCTGCCGCACGCGTCGTCGACGTCATTA
CGTCGCCGCGTTCGCCGCGTTCGCCGCGCTTCTCTCCGTCTGCGGCGCGT
CTGCGCGAGATACAGCAACAGCCGCACTTTCGCTATGAGGCCGCTGCGTC
GCACCCTTCCTCCCCATCCGCACACTGTGTTGAGCACTCGCCGCAATTCT
CGCCTGGCGCTGTGTCCCCGCCCATTGGTGCTGCGTCGCCGCCGCCGCCA
CCGCCGCCGCCGCCGCCGCCGCCGCCGCGCACGCATCATCAGTGGTGCGA
GCGCGATGTCGTCACCGCCGTGTGCGCCCTGTTGCACCAGTGGTGTCGTG
GCACCGAGTCAATCACGGGCCACCACGCGTCACCGCAGCACCAGCTCAAG
TACCACGCGTTCTTCTCGCAGTACCGCCAGCCGTTTGAGCTGCCCTTTTA
CGTCAAGCGTCTGGTGCAGTTTTGCAACTGCTCGTTATCGGCCTTCATCG
TCGCGCTCACGTTTGTGCACCGCGTGCAGACCGAGTGCAACGCGTTGCGC
GTGAGCGAGATGAACGTACACCGACTGTTTTGTACCGCGCTCGTGCTCGC
CATCAAGAACGTTGACGATGAGCTGTTTTCCAACGCGTACTACGCGCGTG
TGGCTGGCATCTCGTGTGAAGAGCTCAATGAGCTGGAAGTGACCATGCTG
CACGTGTTGCGCTGGGACGCGGCGTGCCCGTTGTTGCGCTACCAGCTCAT
GGAGAGACGGCTGTTGCAAACGCTGGCGCTCGAGACGGCGTGCCTGCACG
CCGAGGAGCGTGGCTATAAGCAAGCCTACCGGCCTCGCGCCTATGGCTGT
GAGTACGCGTACGGCCAGCACGACGAAGACGAAGACGGTCACTTGGACGA
AGACGGTCACTTGGACGAAGAGGGCCACTTGGACCTGGACGAGCACGACG
GCGATTTGGACGAGCACGACGGCGATTTGGACGAGCACGACGGCGATTTG
GACGAGGACGTCGTCGGTGAGCCGCGTGTCACGTGCGCTGCGTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:785038..786432-

>Gchil1526.t1 ID=Gchil1526.t1|Name=Gchil1526.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1395bp|location=Sequence derived from alignment at tig00004403_pilon:785038..786432- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCCCGCAACCGCCACAGCCCCGCCGCCCTCGCGCCCCACGCGCCC
CACCAAGCGTCGCCTCCCGCCCGCCACCCACCCGGATCGCGTCGCCGCCC
CCTGCCTCAAGCGCCCGCGTCCAGCGCACACCACCACCACGCCGCCCAAG
TCGGCCACCATTTCGCTCGTCAGCCCACCCGAGTCGCGCACGCCCCCATC
CCCGCCCCCGTCCCCCTTACTACCGTGTTCGCCGTCGCCGTCTCCATCCG
CTTCACCGTCGCCGCTGCTGCCGCCGCCGCGCCGCAGCGCGCGCAAGCCG
CGCTTCTCGTCGCTTTCCAACACTTGCTCTGCTTCTTCTGCTGCCGCTGC
TGCCGCTGCTGCCGCTGCTGCTGCTGCCGCACGCGTCGTCGACGTCATTA
CGTCGCCGCGTTCGCCGCGTTCGCCGCGCTTCTCTCCGTCTGCGGCGCGT
CTGCGCGAGATACAGCAACAGCCGCACTTTCGCTATGAGGCCGCTGCGTC
GCACCCTTCCTCCCCATCCGCACACTGTGTTGAGCACTCGCCGCAATTCT
CGCCTGGCGCTGTGTCCCCGCCCATTGGTGCTGCGTCGCCGCCGCCGCCA
CCGCCGCCGCCGCCGCCGCCGCCGCCGCGCACGCATCATCAGTGGTGCGA
GCGCGATGTCGTCACCGCCGTGTGCGCCCTGTTGCACCAGTGGTGTCGTG
GCACCGAGTCAATCACGGGCCACCACGCGTCACCGCAGCACCAGCTCAAG
TACCACGCGTTCTTCTCGCAGTACCGCCAGCCGTTTGAGCTGCCCTTTTA
CGTCAAGCGTCTGGTGCAGTTTTGCAACTGCTCGTTATCGGCCTTCATCG
TCGCGCTCACGTTTGTGCACCGCGTGCAGACCGAGTGCAACGCGTTGCGC
GTGAGCGAGATGAACGTACACCGACTGTTTTGTACCGCGCTCGTGCTCGC
CATCAAGAACGTTGACGATGAGCTGTTTTCCAACGCGTACTACGCGCGTG
TGGCTGGCATCTCGTGTGAAGAGCTCAATGAGCTGGAAGTGACCATGCTG
CACGTGTTGCGCTGGGACGCGGCGTGCCCGTTGTTGCGCTACCAGCTCAT
GGAGAGACGGCTGTTGCAAACGCTGGCGCTCGAGACGGCGTGCCTGCACG
CCGAGGAGCGTGGCTATAAGCAAGCCTACCGGCCTCGCGCCTATGGCTGT
GAGTACGCGTACGGCCAGCACGACGAAGACGAAGACGGTCACTTGGACGA
AGACGGTCACTTGGACGAAGAGGGCCACTTGGACCTGGACGAGCACGACG
GCGATTTGGACGAGCACGACGGCGATTTGGACGAGCACGACGGCGATTTG
GACGAGGACGTCGTCGGTGAGCCGCGTGTCACGTGCGCTGCGTGA
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