Gchil1791.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1791.t1
Unique NameGchil1791.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length432
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2482564..2483859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703545.1
PFAMsBranch
Max annot lvl2759|Eukaryota
KEGG koko:K00742,ko:K00771,ko:K02836,ko:K14763,ko:K20891
KEGG ReactionR05925,R06189
KEGG Pathwayko00532,ko00534,ko00601,ko01100,map00532,map00534,map00601,map01100
KEGG ModuleM00057
GOsGO:0000139,GO:0000902,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006029,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009826,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0015020,GO:0016020,GO:0016043,GO:0016049,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0022008,GO:0030154,GO:0030166,GO:0030201,GO:0031090,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032989,GO:0034097,GO:0034645,GO:0040007,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048679,GO:0048681,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060284,GO:0060560,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:2000026
Evalue2.67e-61
EggNOG OGsKOG0799@1|root,KOG0799@2759|Eukaryota
EC2.4.1.150,2.4.2.26
Descriptionacetylglucosaminyltransferase activity
COG categoryO
CAZyGT14
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03009,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1791Gchil1791Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2482564..2483859 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1791.t1.stop1Gchil1791.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2482564..2482566 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1791.t1.CDS1Gchil1791.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2482564..2483859 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1791.t1.exon1Gchil1791.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2482564..2483859 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1791.t1.start1Gchil1791.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2483857..2483859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1791.t1Gchil1791.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2482564..2483859 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1791.t1 ID=Gchil1791.t1|Name=Gchil1791.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=432bp
MRIWMGLLFATFLLFQLATVFAAPSPPFFAAKLESSGTNQANPSPESPGK
ESDSVSETVSDSTSQRQLEGTGSQKDIEREANVERTKHDTSSAGGKGEGD
DPTREANIAYFIQISEATVPHLPRLLKSIYHPKNVYAVHFDLKISKDDVQ
QVVQELRRQIGEAKNLHIMPSELITYRGISMLLNTINAIHLLFEKDDSWD
YFINISGSDYPLVTAESQRQLLGHELGLNYFTYAPSEKWAGMAENRLSEI
WFDESIAFRQNASLGKLQKLPIRNPLVDQRQFEVTHAEAWMISSREFCDF
VLKSDMARKMLVAFSYAVDSSEHYFASLAWNQEKFKKTIVTHSMRLVIWF
HEGNLSGQHPYYVDERRENGEYEFRSKIEKSVLFFARKFKDVDSELMDYV
DERAKKKETYDAVQDHLVKKIASRFIRLEEL*
back to top

spliced messenger RNA

>Gchil1791.t1 ID=Gchil1791.t1|Name=Gchil1791.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1296bp|location=Sequence derived from alignment at tig00004403_pilon:2482564..2483859- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGATATGGATGGGTCTGTTGTTTGCTACGTTTCTTCTTTTTCAGCT
TGCCACTGTGTTTGCTGCTCCATCACCACCGTTCTTTGCCGCAAAACTGG
AGTCGTCTGGTACTAATCAAGCTAATCCCTCTCCCGAATCACCAGGAAAA
GAGTCGGATTCAGTCTCAGAAACTGTCTCAGACTCTACATCGCAGCGACA
GCTTGAAGGCACTGGGTCTCAGAAAGATATTGAGCGGGAAGCGAATGTTG
AAAGAACGAAGCACGATACAAGTAGCGCGGGTGGAAAAGGCGAAGGGGAT
GACCCCACTCGCGAAGCGAACATCGCCTATTTCATCCAGATTTCTGAGGC
TACAGTTCCACATCTCCCTCGTTTATTGAAGTCTATTTATCATCCCAAGA
ATGTTTATGCTGTTCATTTTGACTTGAAGATCTCGAAAGATGACGTTCAA
CAAGTGGTTCAGGAATTGCGTCGGCAAATAGGAGAGGCGAAGAATCTCCA
TATAATGCCATCTGAACTTATCACATATCGTGGGATCAGTATGCTGCTGA
ACACTATTAACGCCATTCACCTTTTGTTCGAAAAAGATGATAGCTGGGAC
TACTTTATCAACATCAGTGGTTCAGACTATCCCCTGGTTACTGCCGAAAG
TCAACGCCAGCTTCTGGGTCATGAACTAGGTTTGAACTACTTCACATATG
CTCCAAGCGAGAAATGGGCAGGTATGGCTGAGAATCGATTATCAGAAATA
TGGTTCGATGAGTCTATTGCATTCCGACAGAATGCCTCTCTTGGAAAACT
GCAGAAACTTCCAATTCGGAACCCGCTTGTCGACCAGCGACAGTTTGAAG
TAACACATGCTGAGGCGTGGATGATTTCTTCTCGTGAATTCTGCGACTTC
GTTCTTAAAAGCGACATGGCTCGTAAAATGCTCGTCGCCTTTTCATACGC
TGTGGATAGTTCGGAGCACTACTTCGCCAGCCTTGCATGGAATCAAGAGA
AATTCAAGAAAACTATTGTAACTCATTCGATGCGCTTGGTTATTTGGTTT
CATGAAGGAAACCTATCCGGTCAACATCCATATTACGTTGATGAACGTCG
CGAGAACGGGGAGTATGAGTTCAGGAGTAAGATAGAAAAATCTGTATTAT
TTTTCGCGAGAAAGTTTAAGGATGTTGACTCAGAACTTATGGATTACGTT
GACGAACGAGCGAAGAAGAAAGAAACTTATGACGCCGTCCAAGATCACCT
CGTTAAGAAGATTGCGAGTCGGTTTATTCGGTTGGAAGAGCTTTAG
back to top

protein sequence of Gchil1791.t1

>Gchil1791.t1 ID=Gchil1791.t1|Name=Gchil1791.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=432bp
MRIWMGLLFATFLLFQLATVFAAPSPPFFAAKLESSGTNQANPSPESPGK
ESDSVSETVSDSTSQRQLEGTGSQKDIEREANVERTKHDTSSAGGKGEGD
DPTREANIAYFIQISEATVPHLPRLLKSIYHPKNVYAVHFDLKISKDDVQ
QVVQELRRQIGEAKNLHIMPSELITYRGISMLLNTINAIHLLFEKDDSWD
YFINISGSDYPLVTAESQRQLLGHELGLNYFTYAPSEKWAGMAENRLSEI
WFDESIAFRQNASLGKLQKLPIRNPLVDQRQFEVTHAEAWMISSREFCDF
VLKSDMARKMLVAFSYAVDSSEHYFASLAWNQEKFKKTIVTHSMRLVIWF
HEGNLSGQHPYYVDERRENGEYEFRSKIEKSVLFFARKFKDVDSELMDYV
DERAKKKETYDAVQDHLVKKIASRFIRLEEL*
back to top

mRNA from alignment at tig00004403_pilon:2482564..2483859-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1791.t1 ID=Gchil1791.t1|Name=Gchil1791.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1296bp|location=Sequence derived from alignment at tig00004403_pilon:2482564..2483859- (Gracilaria chilensis NLEC103_M9 male)
ATGCGGATATGGATGGGTCTGTTGTTTGCTACGTTTCTTCTTTTTCAGCT
TGCCACTGTGTTTGCTGCTCCATCACCACCGTTCTTTGCCGCAAAACTGG
AGTCGTCTGGTACTAATCAAGCTAATCCCTCTCCCGAATCACCAGGAAAA
GAGTCGGATTCAGTCTCAGAAACTGTCTCAGACTCTACATCGCAGCGACA
GCTTGAAGGCACTGGGTCTCAGAAAGATATTGAGCGGGAAGCGAATGTTG
AAAGAACGAAGCACGATACAAGTAGCGCGGGTGGAAAAGGCGAAGGGGAT
GACCCCACTCGCGAAGCGAACATCGCCTATTTCATCCAGATTTCTGAGGC
TACAGTTCCACATCTCCCTCGTTTATTGAAGTCTATTTATCATCCCAAGA
ATGTTTATGCTGTTCATTTTGACTTGAAGATCTCGAAAGATGACGTTCAA
CAAGTGGTTCAGGAATTGCGTCGGCAAATAGGAGAGGCGAAGAATCTCCA
TATAATGCCATCTGAACTTATCACATATCGTGGGATCAGTATGCTGCTGA
ACACTATTAACGCCATTCACCTTTTGTTCGAAAAAGATGATAGCTGGGAC
TACTTTATCAACATCAGTGGTTCAGACTATCCCCTGGTTACTGCCGAAAG
TCAACGCCAGCTTCTGGGTCATGAACTAGGTTTGAACTACTTCACATATG
CTCCAAGCGAGAAATGGGCAGGTATGGCTGAGAATCGATTATCAGAAATA
TGGTTCGATGAGTCTATTGCATTCCGACAGAATGCCTCTCTTGGAAAACT
GCAGAAACTTCCAATTCGGAACCCGCTTGTCGACCAGCGACAGTTTGAAG
TAACACATGCTGAGGCGTGGATGATTTCTTCTCGTGAATTCTGCGACTTC
GTTCTTAAAAGCGACATGGCTCGTAAAATGCTCGTCGCCTTTTCATACGC
TGTGGATAGTTCGGAGCACTACTTCGCCAGCCTTGCATGGAATCAAGAGA
AATTCAAGAAAACTATTGTAACTCATTCGATGCGCTTGGTTATTTGGTTT
CATGAAGGAAACCTATCCGGTCAACATCCATATTACGTTGATGAACGTCG
CGAGAACGGGGAGTATGAGTTCAGGAGTAAGATAGAAAAATCTGTATTAT
TTTTCGCGAGAAAGTTTAAGGATGTTGACTCAGAACTTATGGATTACGTT
GACGAACGAGCGAAGAAGAAAGAAACTTATGACGCCGTCCAAGATCACCT
CGTTAAGAAGATTGCGAGTCGGTTTATTCGGTTGGAAGAGCTTTAG
back to top

Coding sequence (CDS) from alignment at tig00004403_pilon:2482564..2483859-

>Gchil1791.t1 ID=Gchil1791.t1|Name=Gchil1791.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1296bp|location=Sequence derived from alignment at tig00004403_pilon:2482564..2483859- (Gracilaria chilensis NLEC103_M9 male)
ATGCGGATATGGATGGGTCTGTTGTTTGCTACGTTTCTTCTTTTTCAGCT
TGCCACTGTGTTTGCTGCTCCATCACCACCGTTCTTTGCCGCAAAACTGG
AGTCGTCTGGTACTAATCAAGCTAATCCCTCTCCCGAATCACCAGGAAAA
GAGTCGGATTCAGTCTCAGAAACTGTCTCAGACTCTACATCGCAGCGACA
GCTTGAAGGCACTGGGTCTCAGAAAGATATTGAGCGGGAAGCGAATGTTG
AAAGAACGAAGCACGATACAAGTAGCGCGGGTGGAAAAGGCGAAGGGGAT
GACCCCACTCGCGAAGCGAACATCGCCTATTTCATCCAGATTTCTGAGGC
TACAGTTCCACATCTCCCTCGTTTATTGAAGTCTATTTATCATCCCAAGA
ATGTTTATGCTGTTCATTTTGACTTGAAGATCTCGAAAGATGACGTTCAA
CAAGTGGTTCAGGAATTGCGTCGGCAAATAGGAGAGGCGAAGAATCTCCA
TATAATGCCATCTGAACTTATCACATATCGTGGGATCAGTATGCTGCTGA
ACACTATTAACGCCATTCACCTTTTGTTCGAAAAAGATGATAGCTGGGAC
TACTTTATCAACATCAGTGGTTCAGACTATCCCCTGGTTACTGCCGAAAG
TCAACGCCAGCTTCTGGGTCATGAACTAGGTTTGAACTACTTCACATATG
CTCCAAGCGAGAAATGGGCAGGTATGGCTGAGAATCGATTATCAGAAATA
TGGTTCGATGAGTCTATTGCATTCCGACAGAATGCCTCTCTTGGAAAACT
GCAGAAACTTCCAATTCGGAACCCGCTTGTCGACCAGCGACAGTTTGAAG
TAACACATGCTGAGGCGTGGATGATTTCTTCTCGTGAATTCTGCGACTTC
GTTCTTAAAAGCGACATGGCTCGTAAAATGCTCGTCGCCTTTTCATACGC
TGTGGATAGTTCGGAGCACTACTTCGCCAGCCTTGCATGGAATCAAGAGA
AATTCAAGAAAACTATTGTAACTCATTCGATGCGCTTGGTTATTTGGTTT
CATGAAGGAAACCTATCCGGTCAACATCCATATTACGTTGATGAACGTCG
CGAGAACGGGGAGTATGAGTTCAGGAGTAAGATAGAAAAATCTGTATTAT
TTTTCGCGAGAAAGTTTAAGGATGTTGACTCAGAACTTATGGATTACGTT
GACGAACGAGCGAAGAAGAAAGAAACTTATGACGCCGTCCAAGATCACCT
CGTTAAGAAGATTGCGAGTCGGTTTATTCGGTTGGAAGAGCTTTAG
back to top