Gchil1512.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1512.t1
Unique NameGchil1512.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length141
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:481131..482311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1512Gchil1512Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 481131..482311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1512.t1Gchil1512.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 481131..482311 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1512.t1.stop1Gchil1512.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 481131..481133 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1512.t1.CDS1Gchil1512.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 481131..481237 -
Gchil1512.t1.CDS2Gchil1512.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 481996..482311 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1512.t1.exon1Gchil1512.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 481131..481237 -
Gchil1512.t1.exon2Gchil1512.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 481996..482311 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1512.t1.intron1Gchil1512.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 481238..481995 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1512.t1.start1Gchil1512.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 482309..482311 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1512.t1 ID=Gchil1512.t1|Name=Gchil1512.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=141bp
MPFVIGEDVNILPSEEPVATNEPVPFVIITCQEDGCFSGDGQQYNCPPTF
AFPAAQSASFLQVEFEQGVGFEVMYNATVSLAEVDSGFVDAIPWQRTDNG
AAPAVALAAQLALPATLQPPLSPRRSAPTPPRQPVVAYRE*
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spliced messenger RNA

>Gchil1512.t1 ID=Gchil1512.t1|Name=Gchil1512.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=423bp|location=Sequence derived from alignment at tig00004403_pilon:481131..482311- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTTTGTGATTGGTGAGGATGTTAACATTCTGCCATCCGAGGAGCC
GGTCGCAACCAACGAACCAGTGCCGTTTGTGATCATCACCTGCCAGGAAG
ACGGATGCTTCTCAGGAGACGGGCAGCAGTATAATTGCCCGCCCACGTTT
GCGTTCCCCGCTGCTCAATCGGCGTCATTTTTGCAGGTTGAATTTGAGCA
AGGTGTGGGGTTTGAAGTGATGTACAACGCCACTGTGTCACTGGCCGAGG
TCGACAGCGGCTTTGTTGACGCCATACCGTGGCAGAGAACTGACAATGGT
GCGGCGCCAGCTGTGGCGCTTGCTGCTCAACTGGCCTTGCCGGCTACGTT
GCAGCCACCGCTCTCGCCACGGCGTTCTGCGCCAACCCCACCGCGCCAGC
CCGTTGTTGCCTACCGCGAATAG
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protein sequence of Gchil1512.t1

>Gchil1512.t1 ID=Gchil1512.t1|Name=Gchil1512.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=141bp
MPFVIGEDVNILPSEEPVATNEPVPFVIITCQEDGCFSGDGQQYNCPPTF
AFPAAQSASFLQVEFEQGVGFEVMYNATVSLAEVDSGFVDAIPWQRTDNG
AAPAVALAAQLALPATLQPPLSPRRSAPTPPRQPVVAYRE*
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mRNA from alignment at tig00004403_pilon:481131..482311-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1512.t1 ID=Gchil1512.t1|Name=Gchil1512.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1181bp|location=Sequence derived from alignment at tig00004403_pilon:481131..482311- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTTTGTGATTGGTGAGGATGTTAACATTCTGCCATCCGAGGAGCC
GGTCGCAACCAACGAACCAGTGCCGTTTGTGATCATCACCTGCCAGGAAG
ACGGATGCTTCTCAGGAGACGGGCAGCAGTATAATTGCCCGCCCACGTTT
GCGTTCCCCGCTGCTCAATCGGCGTCATTTTTGCAGGTTGAATTTGAGCA
AGGTGTGGGGTTTGAAGTGATGTACAACGCCACTGTGTCACTGGCCGAGG
TCGACAGCGGCTTTGTTGACGCCATACCGTGGCAGAGAACTGACAATGGT
GCGGCGCCAGCTGTGGGTACGTGCGTGCTGGATGATGAGCCTGAGGAGAG
TGGTAATGACGATTTTAAGATTGGACTTCCTTTCGGCGCTTGCTGTGGTG
CGTGTTCGCGGTTAAGCGCCAATCGCGTGCCGCCGCCGTTTTCGTGTTGT
CGGCCGTGTAGATTCCAATAAAACGGCACAGAACTACATTACGTATAAGA
TCAAAAATAGTAAACAACCAAGTGCGCAGGACAATGCACAGGCCTGCAAG
GCGGGCTTGTTGTAAAGAAATCATGCATCGACGTTCACATTATGGCGGGT
GATAATGTTTTTCTCTGTCAGAGTCTAGGAGAGTTAAGGTGTATCATAAC
ACCAAACTTACATGGACACTGCTCTGTGGTGCACAAGATGCAAACCAAAC
CACTACGTGGCCAAAGCTACACTGGATGATGGTGTCCACCAGGTTCTTGC
CAAGAAAGAGCAAGAACATAGCTAGATTATTAAATAGCTAGCATACGAGA
GGATAGCTACATTTACAACGCAATAAAAAGCCAGCTCGGTGAAACAACCA
AAGTGTTTCCGAGTCAACGGTTCACTCACACATACATATTCTAATAGTCT
CGGGCTTTAGAGCAAGGGTCACGCGTGCTCCGACCAAATCTGCAGTTACT
CAGAGCACAACTTTCACCCCGATTCCGTAGCCCCCGGATGCACTCGAATT
GTAGTTAACACCACAAAATTGCTGCTGGTTTTTCCGGTAATGGCGAACGT
ACCACTTGGCGCTTTGGCCGCCAGCGCTTGCTGCTCAACTGGCCTTGCCG
GCTACGTTGCAGCCACCGCTCTCGCCACGGCGTTCTGCGCCAACCCCACC
GCGCCAGCCCGTTGTTGCCTACCGCGAATAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:481131..482311-

>Gchil1512.t1 ID=Gchil1512.t1|Name=Gchil1512.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=423bp|location=Sequence derived from alignment at tig00004403_pilon:481131..482311- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTTTGTGATTGGTGAGGATGTTAACATTCTGCCATCCGAGGAGCC
GGTCGCAACCAACGAACCAGTGCCGTTTGTGATCATCACCTGCCAGGAAG
ACGGATGCTTCTCAGGAGACGGGCAGCAGTATAATTGCCCGCCCACGTTT
GCGTTCCCCGCTGCTCAATCGGCGTCATTTTTGCAGGTTGAATTTGAGCA
AGGTGTGGGGTTTGAAGTGATGTACAACGCCACTGTGTCACTGGCCGAGG
TCGACAGCGGCTTTGTTGACGCCATACCGTGGCAGAGAACTGACAATGGT
GCGGCGCCAGCTGTGGCGCTTGCTGCTCAACTGGCCTTGCCGGCTACGTT
GCAGCCACCGCTCTCGCCACGGCGTTCTGCGCCAACCCCACCGCGCCAGC
CCGTTGTTGCCTACCGCGAATAG
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