Gchil1624.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1624.t1
Unique NameGchil1624.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length749
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1222051..1224297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMM179CT
PFAMsCitMHS,Na_sulph_symp,TrkA_C
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008272,GO:0008509,GO:0015075,GO:0015103,GO:0015116,GO:0015318,GO:0015698,GO:0016020,GO:0022857,GO:0034220,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0072348,GO:0098656,GO:0098660,GO:0098661,GO:1901682,GO:1902358
Evalue1.02e-159
EggNOG OGsCOG0471@1|root,2QPZM@2759|Eukaryota
Descriptionpotassium ion transport
COG categoryP
BiGG ReactioniRC1080.CRv4_Au5_s10_g542_t1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1624Gchil1624Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1222051..1224297 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1624.t1.stop1Gchil1624.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1222051..1222053 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1624.t1.CDS1Gchil1624.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1222051..1224297 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1624.t1.exon1Gchil1624.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1222051..1224297 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1624.t1.start1Gchil1624.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1224295..1224297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1624.t1Gchil1624.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1222051..1224297 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1624.t1 ID=Gchil1624.t1|Name=Gchil1624.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=749bp
MTLPTVPPHHRSSERHSFHSDENIDCRIISIPDLPETPLDAVVSEDQFVC
TALEIPLTDSNLVDFTYPSLPSPLPSAHTSPRKGDHAQATHYGSAPLPTR
QTAGENFTTRIPSPARRRNSVVLFGIAAALGAIAGIWSIFHDLGWKAWVS
VVILLITLCILLSNAFPTVLSMLFGLSLMLVFDIVRPSRAVEGFSNVGVL
SVAVLFIVADGIQRTSVLLPIFRVLLGKPQRTWVAQLRVMLPVAIISAFL
NNTPVVAMLIPVVQSWSRRANMPVSKLMMPLSNAAVLGGTLTLLGTSTNL
VVNGLAVKSKILGVNENGIGIGLPIFGITPIGLVVLLAGLVYMLLFSHWL
LRDRGKTGVGAMMCNPREYTVALLVKAHSPIVGETVQEAGLRNLSGLFLV
EVTRADGTVIPAVAPDTLILTGDTLLFAGIVETVRELYHIQGLVPATGQS
QKMKIERHRRRLVELVIGATSALVGTTAKESQFRSRFSAAIIAVHRQGIH
IKQRIADIRLRAGDTLLVEAGTEFAETFGKDSNFALVSEVTHSQPPREDL
AHMMISAATAVCMVALAASGTVPLLTAASAAAFVMIVSGCMSVNNAGQAV
DMAVVVTIAASFGLSNGLEDSGAAERMANAMVQAFERVGSLGLLFGIYTG
TALLSSVITNNAAVSLVFPVVRSIVSKEGVGATSALYTLMIGASACFSTP
IGYQTNLMVHGPGGYTFGDWVRFGTPMQLVLGAVGVLTVHWLHGTSSP*
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spliced messenger RNA

>Gchil1624.t1 ID=Gchil1624.t1|Name=Gchil1624.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2247bp|location=Sequence derived from alignment at tig00004403_pilon:1222051..1224297- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACTTCCGACTGTGCCGCCTCACCATCGCAGCTCCGAACGCCATTC
ATTTCACAGCGATGAGAACATCGACTGCCGCATCATAAGCATCCCGGACC
TCCCTGAAACCCCTCTCGACGCTGTTGTCTCCGAAGACCAGTTTGTGTGT
ACCGCCCTCGAAATACCTTTAACGGATTCAAACCTCGTTGATTTCACATA
TCCCAGTCTACCATCTCCTCTTCCATCTGCACATACCTCTCCCCGAAAAG
GTGATCATGCACAGGCCACTCACTATGGCTCCGCACCGTTGCCTACGCGT
CAAACTGCGGGAGAAAACTTTACTACCAGGATTCCGAGCCCAGCACGGCG
AAGAAACAGCGTTGTTTTGTTTGGCATTGCTGCGGCTCTTGGTGCGATCG
CGGGCATTTGGTCCATATTTCATGATCTGGGATGGAAAGCATGGGTATCT
GTCGTCATTCTGTTAATCACTCTCTGCATCTTGTTATCCAACGCGTTTCC
TACGGTACTGTCGATGCTTTTTGGCCTTTCTCTAATGCTAGTATTTGACA
TTGTCAGACCTTCACGTGCTGTAGAGGGATTTTCTAATGTTGGCGTGCTA
TCCGTTGCTGTGCTTTTCATCGTTGCCGATGGGATTCAGCGCACATCAGT
TCTGCTACCAATCTTCCGCGTGCTACTGGGTAAACCGCAGCGTACGTGGG
TAGCACAGTTACGCGTCATGCTTCCGGTGGCCATTATCTCAGCCTTTCTC
AACAACACTCCAGTTGTTGCCATGCTCATACCGGTGGTGCAATCGTGGTC
GAGACGAGCAAATATGCCGGTCTCAAAGTTAATGATGCCGCTCAGTAATG
CTGCTGTGCTAGGTGGAACACTGACACTTCTTGGCACCAGCACAAATCTT
GTTGTGAATGGGTTGGCAGTCAAAAGCAAGATTCTTGGCGTCAACGAAAA
TGGAATAGGGATTGGACTGCCAATATTTGGTATCACACCTATCGGGTTGG
TGGTGCTTTTGGCAGGGCTCGTATACATGCTGCTGTTTTCTCACTGGCTC
CTTCGTGACCGTGGAAAGACGGGAGTCGGGGCGATGATGTGCAATCCGCG
GGAGTACACAGTTGCGCTGCTGGTGAAAGCCCACTCTCCCATCGTAGGCG
AAACAGTACAAGAAGCAGGGCTGCGAAATTTGAGCGGTTTGTTCTTGGTT
GAGGTAACTCGCGCAGATGGCACTGTGATTCCTGCAGTGGCACCAGATAC
GCTCATCTTAACAGGGGATACTCTACTTTTTGCTGGAATTGTAGAAACTG
TCCGCGAATTGTATCACATTCAAGGATTAGTGCCGGCCACAGGACAGTCA
CAGAAAATGAAGATTGAACGACATCGACGCAGACTCGTAGAACTTGTGAT
TGGTGCAACATCTGCATTGGTAGGCACAACAGCGAAAGAATCGCAGTTTC
GATCCCGTTTCTCAGCCGCAATCATTGCCGTGCACCGACAGGGAATACAC
ATCAAACAACGAATCGCAGACATTCGTCTGAGAGCAGGCGACACGCTACT
TGTTGAAGCCGGTACAGAATTCGCTGAAACATTCGGAAAGGACTCAAACT
TTGCGCTGGTCTCGGAGGTTACACACTCACAGCCGCCGCGAGAAGACTTG
GCACACATGATGATTTCAGCGGCGACTGCGGTGTGTATGGTTGCTCTGGC
TGCCAGTGGCACTGTACCACTGCTCACAGCCGCCAGTGCAGCGGCATTTG
TGATGATTGTGAGCGGATGCATGAGCGTAAACAACGCAGGACAGGCTGTT
GACATGGCAGTAGTAGTGACAATCGCGGCGAGTTTTGGTCTGTCGAACGG
GCTGGAAGATAGTGGGGCCGCCGAACGAATGGCAAATGCAATGGTGCAGG
CGTTTGAAAGAGTGGGCTCGTTGGGGTTACTATTCGGGATCTATACTGGT
ACAGCGCTGCTTTCATCTGTGATCACAAATAACGCGGCAGTATCTCTTGT
ATTCCCGGTGGTGCGAAGCATCGTTTCGAAAGAGGGCGTGGGCGCAACGT
CGGCGCTATACACGCTAATGATAGGCGCGTCGGCGTGCTTCTCGACGCCA
ATCGGGTATCAAACCAACCTTATGGTACACGGACCCGGCGGCTACACGTT
TGGCGACTGGGTGCGCTTTGGCACGCCAATGCAGCTGGTGTTAGGGGCGG
TGGGGGTGCTCACCGTGCATTGGTTGCACGGCACCTCATCGCCGTGA
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protein sequence of Gchil1624.t1

>Gchil1624.t1 ID=Gchil1624.t1|Name=Gchil1624.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=749bp
MTLPTVPPHHRSSERHSFHSDENIDCRIISIPDLPETPLDAVVSEDQFVC
TALEIPLTDSNLVDFTYPSLPSPLPSAHTSPRKGDHAQATHYGSAPLPTR
QTAGENFTTRIPSPARRRNSVVLFGIAAALGAIAGIWSIFHDLGWKAWVS
VVILLITLCILLSNAFPTVLSMLFGLSLMLVFDIVRPSRAVEGFSNVGVL
SVAVLFIVADGIQRTSVLLPIFRVLLGKPQRTWVAQLRVMLPVAIISAFL
NNTPVVAMLIPVVQSWSRRANMPVSKLMMPLSNAAVLGGTLTLLGTSTNL
VVNGLAVKSKILGVNENGIGIGLPIFGITPIGLVVLLAGLVYMLLFSHWL
LRDRGKTGVGAMMCNPREYTVALLVKAHSPIVGETVQEAGLRNLSGLFLV
EVTRADGTVIPAVAPDTLILTGDTLLFAGIVETVRELYHIQGLVPATGQS
QKMKIERHRRRLVELVIGATSALVGTTAKESQFRSRFSAAIIAVHRQGIH
IKQRIADIRLRAGDTLLVEAGTEFAETFGKDSNFALVSEVTHSQPPREDL
AHMMISAATAVCMVALAASGTVPLLTAASAAAFVMIVSGCMSVNNAGQAV
DMAVVVTIAASFGLSNGLEDSGAAERMANAMVQAFERVGSLGLLFGIYTG
TALLSSVITNNAAVSLVFPVVRSIVSKEGVGATSALYTLMIGASACFSTP
IGYQTNLMVHGPGGYTFGDWVRFGTPMQLVLGAVGVLTVHWLHGTSSP*
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mRNA from alignment at tig00004403_pilon:1222051..1224297-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1624.t1 ID=Gchil1624.t1|Name=Gchil1624.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2247bp|location=Sequence derived from alignment at tig00004403_pilon:1222051..1224297- (Gracilaria chilensis NLEC103_M9 male)
ATGACACTTCCGACTGTGCCGCCTCACCATCGCAGCTCCGAACGCCATTC
ATTTCACAGCGATGAGAACATCGACTGCCGCATCATAAGCATCCCGGACC
TCCCTGAAACCCCTCTCGACGCTGTTGTCTCCGAAGACCAGTTTGTGTGT
ACCGCCCTCGAAATACCTTTAACGGATTCAAACCTCGTTGATTTCACATA
TCCCAGTCTACCATCTCCTCTTCCATCTGCACATACCTCTCCCCGAAAAG
GTGATCATGCACAGGCCACTCACTATGGCTCCGCACCGTTGCCTACGCGT
CAAACTGCGGGAGAAAACTTTACTACCAGGATTCCGAGCCCAGCACGGCG
AAGAAACAGCGTTGTTTTGTTTGGCATTGCTGCGGCTCTTGGTGCGATCG
CGGGCATTTGGTCCATATTTCATGATCTGGGATGGAAAGCATGGGTATCT
GTCGTCATTCTGTTAATCACTCTCTGCATCTTGTTATCCAACGCGTTTCC
TACGGTACTGTCGATGCTTTTTGGCCTTTCTCTAATGCTAGTATTTGACA
TTGTCAGACCTTCACGTGCTGTAGAGGGATTTTCTAATGTTGGCGTGCTA
TCCGTTGCTGTGCTTTTCATCGTTGCCGATGGGATTCAGCGCACATCAGT
TCTGCTACCAATCTTCCGCGTGCTACTGGGTAAACCGCAGCGTACGTGGG
TAGCACAGTTACGCGTCATGCTTCCGGTGGCCATTATCTCAGCCTTTCTC
AACAACACTCCAGTTGTTGCCATGCTCATACCGGTGGTGCAATCGTGGTC
GAGACGAGCAAATATGCCGGTCTCAAAGTTAATGATGCCGCTCAGTAATG
CTGCTGTGCTAGGTGGAACACTGACACTTCTTGGCACCAGCACAAATCTT
GTTGTGAATGGGTTGGCAGTCAAAAGCAAGATTCTTGGCGTCAACGAAAA
TGGAATAGGGATTGGACTGCCAATATTTGGTATCACACCTATCGGGTTGG
TGGTGCTTTTGGCAGGGCTCGTATACATGCTGCTGTTTTCTCACTGGCTC
CTTCGTGACCGTGGAAAGACGGGAGTCGGGGCGATGATGTGCAATCCGCG
GGAGTACACAGTTGCGCTGCTGGTGAAAGCCCACTCTCCCATCGTAGGCG
AAACAGTACAAGAAGCAGGGCTGCGAAATTTGAGCGGTTTGTTCTTGGTT
GAGGTAACTCGCGCAGATGGCACTGTGATTCCTGCAGTGGCACCAGATAC
GCTCATCTTAACAGGGGATACTCTACTTTTTGCTGGAATTGTAGAAACTG
TCCGCGAATTGTATCACATTCAAGGATTAGTGCCGGCCACAGGACAGTCA
CAGAAAATGAAGATTGAACGACATCGACGCAGACTCGTAGAACTTGTGAT
TGGTGCAACATCTGCATTGGTAGGCACAACAGCGAAAGAATCGCAGTTTC
GATCCCGTTTCTCAGCCGCAATCATTGCCGTGCACCGACAGGGAATACAC
ATCAAACAACGAATCGCAGACATTCGTCTGAGAGCAGGCGACACGCTACT
TGTTGAAGCCGGTACAGAATTCGCTGAAACATTCGGAAAGGACTCAAACT
TTGCGCTGGTCTCGGAGGTTACACACTCACAGCCGCCGCGAGAAGACTTG
GCACACATGATGATTTCAGCGGCGACTGCGGTGTGTATGGTTGCTCTGGC
TGCCAGTGGCACTGTACCACTGCTCACAGCCGCCAGTGCAGCGGCATTTG
TGATGATTGTGAGCGGATGCATGAGCGTAAACAACGCAGGACAGGCTGTT
GACATGGCAGTAGTAGTGACAATCGCGGCGAGTTTTGGTCTGTCGAACGG
GCTGGAAGATAGTGGGGCCGCCGAACGAATGGCAAATGCAATGGTGCAGG
CGTTTGAAAGAGTGGGCTCGTTGGGGTTACTATTCGGGATCTATACTGGT
ACAGCGCTGCTTTCATCTGTGATCACAAATAACGCGGCAGTATCTCTTGT
ATTCCCGGTGGTGCGAAGCATCGTTTCGAAAGAGGGCGTGGGCGCAACGT
CGGCGCTATACACGCTAATGATAGGCGCGTCGGCGTGCTTCTCGACGCCA
ATCGGGTATCAAACCAACCTTATGGTACACGGACCCGGCGGCTACACGTT
TGGCGACTGGGTGCGCTTTGGCACGCCAATGCAGCTGGTGTTAGGGGCGG
TGGGGGTGCTCACCGTGCATTGGTTGCACGGCACCTCATCGCCGTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1222051..1224297-

>Gchil1624.t1 ID=Gchil1624.t1|Name=Gchil1624.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2247bp|location=Sequence derived from alignment at tig00004403_pilon:1222051..1224297- (Gracilaria chilensis NLEC103_M9 male)
ATGACACTTCCGACTGTGCCGCCTCACCATCGCAGCTCCGAACGCCATTC
ATTTCACAGCGATGAGAACATCGACTGCCGCATCATAAGCATCCCGGACC
TCCCTGAAACCCCTCTCGACGCTGTTGTCTCCGAAGACCAGTTTGTGTGT
ACCGCCCTCGAAATACCTTTAACGGATTCAAACCTCGTTGATTTCACATA
TCCCAGTCTACCATCTCCTCTTCCATCTGCACATACCTCTCCCCGAAAAG
GTGATCATGCACAGGCCACTCACTATGGCTCCGCACCGTTGCCTACGCGT
CAAACTGCGGGAGAAAACTTTACTACCAGGATTCCGAGCCCAGCACGGCG
AAGAAACAGCGTTGTTTTGTTTGGCATTGCTGCGGCTCTTGGTGCGATCG
CGGGCATTTGGTCCATATTTCATGATCTGGGATGGAAAGCATGGGTATCT
GTCGTCATTCTGTTAATCACTCTCTGCATCTTGTTATCCAACGCGTTTCC
TACGGTACTGTCGATGCTTTTTGGCCTTTCTCTAATGCTAGTATTTGACA
TTGTCAGACCTTCACGTGCTGTAGAGGGATTTTCTAATGTTGGCGTGCTA
TCCGTTGCTGTGCTTTTCATCGTTGCCGATGGGATTCAGCGCACATCAGT
TCTGCTACCAATCTTCCGCGTGCTACTGGGTAAACCGCAGCGTACGTGGG
TAGCACAGTTACGCGTCATGCTTCCGGTGGCCATTATCTCAGCCTTTCTC
AACAACACTCCAGTTGTTGCCATGCTCATACCGGTGGTGCAATCGTGGTC
GAGACGAGCAAATATGCCGGTCTCAAAGTTAATGATGCCGCTCAGTAATG
CTGCTGTGCTAGGTGGAACACTGACACTTCTTGGCACCAGCACAAATCTT
GTTGTGAATGGGTTGGCAGTCAAAAGCAAGATTCTTGGCGTCAACGAAAA
TGGAATAGGGATTGGACTGCCAATATTTGGTATCACACCTATCGGGTTGG
TGGTGCTTTTGGCAGGGCTCGTATACATGCTGCTGTTTTCTCACTGGCTC
CTTCGTGACCGTGGAAAGACGGGAGTCGGGGCGATGATGTGCAATCCGCG
GGAGTACACAGTTGCGCTGCTGGTGAAAGCCCACTCTCCCATCGTAGGCG
AAACAGTACAAGAAGCAGGGCTGCGAAATTTGAGCGGTTTGTTCTTGGTT
GAGGTAACTCGCGCAGATGGCACTGTGATTCCTGCAGTGGCACCAGATAC
GCTCATCTTAACAGGGGATACTCTACTTTTTGCTGGAATTGTAGAAACTG
TCCGCGAATTGTATCACATTCAAGGATTAGTGCCGGCCACAGGACAGTCA
CAGAAAATGAAGATTGAACGACATCGACGCAGACTCGTAGAACTTGTGAT
TGGTGCAACATCTGCATTGGTAGGCACAACAGCGAAAGAATCGCAGTTTC
GATCCCGTTTCTCAGCCGCAATCATTGCCGTGCACCGACAGGGAATACAC
ATCAAACAACGAATCGCAGACATTCGTCTGAGAGCAGGCGACACGCTACT
TGTTGAAGCCGGTACAGAATTCGCTGAAACATTCGGAAAGGACTCAAACT
TTGCGCTGGTCTCGGAGGTTACACACTCACAGCCGCCGCGAGAAGACTTG
GCACACATGATGATTTCAGCGGCGACTGCGGTGTGTATGGTTGCTCTGGC
TGCCAGTGGCACTGTACCACTGCTCACAGCCGCCAGTGCAGCGGCATTTG
TGATGATTGTGAGCGGATGCATGAGCGTAAACAACGCAGGACAGGCTGTT
GACATGGCAGTAGTAGTGACAATCGCGGCGAGTTTTGGTCTGTCGAACGG
GCTGGAAGATAGTGGGGCCGCCGAACGAATGGCAAATGCAATGGTGCAGG
CGTTTGAAAGAGTGGGCTCGTTGGGGTTACTATTCGGGATCTATACTGGT
ACAGCGCTGCTTTCATCTGTGATCACAAATAACGCGGCAGTATCTCTTGT
ATTCCCGGTGGTGCGAAGCATCGTTTCGAAAGAGGGCGTGGGCGCAACGT
CGGCGCTATACACGCTAATGATAGGCGCGTCGGCGTGCTTCTCGACGCCA
ATCGGGTATCAAACCAACCTTATGGTACACGGACCCGGCGGCTACACGTT
TGGCGACTGGGTGCGCTTTGGCACGCCAATGCAGCTGGTGTTAGGGGCGG
TGGGGGTGCTCACCGTGCATTGGTTGCACGGCACCTCATCGCCGTGA
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