Gchil1595.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1595.t1
Unique NameGchil1595.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length541
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1118872..1120494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706139.1
Preferred nameMIPS
PFAMsInos-1-P_synth,NAD_binding_5
Max annot lvl2759|Eukaryota
KEGG rclassRC01804
KEGG koko:K01858
KEGG ReactionR07324
KEGG Pathwayko00521,ko00562,ko01100,ko01130,map00521,map00562,map01100,map01130
GOsGO:0000003,GO:0000302,GO:0002252,GO:0002376,GO:0003006,GO:0003674,GO:0003824,GO:0004512,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005975,GO:0006020,GO:0006021,GO:0006066,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006658,GO:0006659,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006979,GO:0007154,GO:0007275,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009266,GO:0009267,GO:0009314,GO:0009408,GO:0009416,GO:0009605,GO:0009607,GO:0009615,GO:0009617,GO:0009620,GO:0009628,GO:0009636,GO:0009642,GO:0009644,GO:0009719,GO:0009725,GO:0009733,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010154,GO:0010264,GO:0016036,GO:0016051,GO:0016853,GO:0016872,GO:0017144,GO:0019637,GO:0019751,GO:0022414,GO:0031667,GO:0031668,GO:0031669,GO:0032501,GO:0032502,GO:0032958,GO:0033517,GO:0033554,GO:0034637,GO:0042221,GO:0042398,GO:0042493,GO:0042542,GO:0042594,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043647,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044262,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0045017,GO:0046165,GO:0046173,GO:0046474,GO:0046486,GO:0046677,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050832,GO:0050896,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0061458,GO:0071496,GO:0071704,GO:0090407,GO:0098542,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1901700
Evalue7.86e-228
EggNOG OGsCOG1260@1|root,KOG0693@2759|Eukaryota
EC5.5.1.4
Descriptioninositol-3-phosphate synthase activity
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1595Gchil1595Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1118872..1120494 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1595.t1.start1Gchil1595.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1118872..1118874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1595.t1.CDS1Gchil1595.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1118872..1120494 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1595.t1.exon1Gchil1595.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1118872..1120494 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1595.t1.stop1Gchil1595.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1120492..1120494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1595.t1Gchil1595.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1118872..1120494 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1595.t1 ID=Gchil1595.t1|Name=Gchil1595.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=541bp
MTDNTEQRKKSVNRIAGAITASGKLTVNNADISVVEGYIRSRFEYNTVKA
VVDDAGNVEATPIKRVYHFRTASKPRKLGLLQVGWGGNNGSTVTAAVVAN
QNDISWETRNQTHAPNYKGSLTQAATLRIGFDEHGHDVFVPFKSVVPMAE
PNNIVLGGWDISGLNMADAMDRAGVLEPDLRRKLRPYMENMKPLPAAFDK
RFIAKNQTFRADNIIQTEDKQAQLEQLREDIRNFKKDNNLEYVVVVWTGN
SERYAIESEGVNDTADNLLASIQASDTEVSPSTLYCAAAILEGCPYINGS
PQNTFVPGTVELAERHSVPICGDDFKSGQTKMKSVLADYLIGCGVKIKTM
VTYNHLGNNDMYQLTDEVMWKPKSASKSRVIEDIVDSNGTLYKGGDDAPD
HIVVVKYVPYLGDSKRDVSEYTSETFMDCHYTTIMHNECLDSALCAPLIL
DLAIFAELFTRVEYGVEDRNDPKKNLVYSPMQSALSVLGFYMKIPRTPAG
EPIINALGRQRACIENMLRALVGLQPENNMLLETKCPVLY*
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spliced messenger RNA

>Gchil1595.t1 ID=Gchil1595.t1|Name=Gchil1595.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1623bp|location=Sequence derived from alignment at tig00004403_pilon:1118872..1120494+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGACAATACAGAACAACGTAAAAAAAGCGTCAATAGAATTGCTGG
AGCAATCACGGCCTCGGGGAAACTCACCGTCAACAACGCTGACATTTCTG
TGGTCGAAGGGTACATTCGATCCCGTTTCGAGTACAATACGGTAAAAGCA
GTTGTAGATGACGCCGGCAACGTAGAAGCAACACCTATCAAACGAGTTTA
CCATTTTCGTACCGCGTCTAAGCCAAGAAAGTTGGGACTCTTACAAGTTG
GATGGGGTGGTAACAATGGGTCCACCGTTACTGCTGCTGTAGTAGCCAAC
CAGAATGATATTTCTTGGGAAACCAGGAATCAAACCCATGCTCCGAACTA
TAAAGGATCTCTGACTCAGGCAGCAACGCTACGAATTGGGTTCGACGAAC
ATGGTCATGATGTCTTTGTACCCTTCAAATCTGTTGTGCCGATGGCAGAG
CCCAACAATATTGTTCTGGGTGGCTGGGACATTTCCGGCCTCAACATGGC
AGATGCGATGGACCGAGCTGGGGTATTAGAACCGGATTTGAGGCGAAAGC
TTCGACCCTATATGGAAAACATGAAACCGTTACCCGCAGCATTTGATAAA
CGGTTTATCGCCAAGAACCAGACTTTTAGGGCTGATAATATTATTCAGAC
CGAAGACAAACAAGCGCAACTAGAGCAACTGAGAGAAGATATCCGCAACT
TCAAGAAGGATAACAACTTGGAGTATGTAGTGGTGGTATGGACTGGAAAT
TCGGAAAGGTATGCGATTGAAAGTGAGGGTGTAAACGACACCGCTGACAA
TCTATTAGCGTCCATTCAGGCGTCTGACACCGAAGTATCTCCATCGACTT
TATATTGCGCTGCTGCTATACTGGAAGGGTGTCCTTATATTAATGGCTCA
CCACAGAATACGTTTGTCCCTGGGACCGTGGAACTGGCAGAAAGGCACAG
CGTTCCTATATGTGGAGATGATTTCAAATCGGGTCAGACCAAAATGAAGT
CTGTGCTTGCTGACTACTTGATTGGATGTGGCGTAAAAATTAAGACGATG
GTAACATACAACCATCTCGGTAACAATGACATGTATCAGCTGACGGATGA
GGTAATGTGGAAACCAAAGTCGGCTTCGAAATCCCGGGTGATCGAAGACA
TTGTTGATTCAAACGGAACATTATACAAAGGTGGCGATGATGCTCCCGAT
CACATTGTTGTTGTGAAATATGTGCCGTATCTAGGTGATTCGAAGCGCGA
TGTGTCTGAATACACATCTGAGACGTTCATGGATTGTCACTACACAACAA
TAATGCATAACGAATGCTTAGATTCCGCGTTATGCGCACCGTTAATACTG
GATTTGGCAATATTCGCGGAATTGTTCACCCGAGTCGAGTACGGTGTGGA
GGATAGGAATGATCCGAAGAAGAACTTGGTATATTCACCAATGCAAAGTG
CATTGAGTGTGTTGGGTTTCTACATGAAGATACCGCGCACACCCGCCGGA
GAACCTATCATAAATGCCTTGGGTCGACAGAGAGCGTGTATTGAAAACAT
GTTGAGGGCATTAGTTGGGCTACAACCAGAAAATAATATGTTACTCGAAA
CGAAGTGCCCTGTTTTATATTAG
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protein sequence of Gchil1595.t1

>Gchil1595.t1 ID=Gchil1595.t1|Name=Gchil1595.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=541bp
MTDNTEQRKKSVNRIAGAITASGKLTVNNADISVVEGYIRSRFEYNTVKA
VVDDAGNVEATPIKRVYHFRTASKPRKLGLLQVGWGGNNGSTVTAAVVAN
QNDISWETRNQTHAPNYKGSLTQAATLRIGFDEHGHDVFVPFKSVVPMAE
PNNIVLGGWDISGLNMADAMDRAGVLEPDLRRKLRPYMENMKPLPAAFDK
RFIAKNQTFRADNIIQTEDKQAQLEQLREDIRNFKKDNNLEYVVVVWTGN
SERYAIESEGVNDTADNLLASIQASDTEVSPSTLYCAAAILEGCPYINGS
PQNTFVPGTVELAERHSVPICGDDFKSGQTKMKSVLADYLIGCGVKIKTM
VTYNHLGNNDMYQLTDEVMWKPKSASKSRVIEDIVDSNGTLYKGGDDAPD
HIVVVKYVPYLGDSKRDVSEYTSETFMDCHYTTIMHNECLDSALCAPLIL
DLAIFAELFTRVEYGVEDRNDPKKNLVYSPMQSALSVLGFYMKIPRTPAG
EPIINALGRQRACIENMLRALVGLQPENNMLLETKCPVLY*
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mRNA from alignment at tig00004403_pilon:1118872..1120494+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1595.t1 ID=Gchil1595.t1|Name=Gchil1595.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1623bp|location=Sequence derived from alignment at tig00004403_pilon:1118872..1120494+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAGACAATACAGAACAACGTAAAAAAAGCGTCAATAGAATTGCTGG
AGCAATCACGGCCTCGGGGAAACTCACCGTCAACAACGCTGACATTTCTG
TGGTCGAAGGGTACATTCGATCCCGTTTCGAGTACAATACGGTAAAAGCA
GTTGTAGATGACGCCGGCAACGTAGAAGCAACACCTATCAAACGAGTTTA
CCATTTTCGTACCGCGTCTAAGCCAAGAAAGTTGGGACTCTTACAAGTTG
GATGGGGTGGTAACAATGGGTCCACCGTTACTGCTGCTGTAGTAGCCAAC
CAGAATGATATTTCTTGGGAAACCAGGAATCAAACCCATGCTCCGAACTA
TAAAGGATCTCTGACTCAGGCAGCAACGCTACGAATTGGGTTCGACGAAC
ATGGTCATGATGTCTTTGTACCCTTCAAATCTGTTGTGCCGATGGCAGAG
CCCAACAATATTGTTCTGGGTGGCTGGGACATTTCCGGCCTCAACATGGC
AGATGCGATGGACCGAGCTGGGGTATTAGAACCGGATTTGAGGCGAAAGC
TTCGACCCTATATGGAAAACATGAAACCGTTACCCGCAGCATTTGATAAA
CGGTTTATCGCCAAGAACCAGACTTTTAGGGCTGATAATATTATTCAGAC
CGAAGACAAACAAGCGCAACTAGAGCAACTGAGAGAAGATATCCGCAACT
TCAAGAAGGATAACAACTTGGAGTATGTAGTGGTGGTATGGACTGGAAAT
TCGGAAAGGTATGCGATTGAAAGTGAGGGTGTAAACGACACCGCTGACAA
TCTATTAGCGTCCATTCAGGCGTCTGACACCGAAGTATCTCCATCGACTT
TATATTGCGCTGCTGCTATACTGGAAGGGTGTCCTTATATTAATGGCTCA
CCACAGAATACGTTTGTCCCTGGGACCGTGGAACTGGCAGAAAGGCACAG
CGTTCCTATATGTGGAGATGATTTCAAATCGGGTCAGACCAAAATGAAGT
CTGTGCTTGCTGACTACTTGATTGGATGTGGCGTAAAAATTAAGACGATG
GTAACATACAACCATCTCGGTAACAATGACATGTATCAGCTGACGGATGA
GGTAATGTGGAAACCAAAGTCGGCTTCGAAATCCCGGGTGATCGAAGACA
TTGTTGATTCAAACGGAACATTATACAAAGGTGGCGATGATGCTCCCGAT
CACATTGTTGTTGTGAAATATGTGCCGTATCTAGGTGATTCGAAGCGCGA
TGTGTCTGAATACACATCTGAGACGTTCATGGATTGTCACTACACAACAA
TAATGCATAACGAATGCTTAGATTCCGCGTTATGCGCACCGTTAATACTG
GATTTGGCAATATTCGCGGAATTGTTCACCCGAGTCGAGTACGGTGTGGA
GGATAGGAATGATCCGAAGAAGAACTTGGTATATTCACCAATGCAAAGTG
CATTGAGTGTGTTGGGTTTCTACATGAAGATACCGCGCACACCCGCCGGA
GAACCTATCATAAATGCCTTGGGTCGACAGAGAGCGTGTATTGAAAACAT
GTTGAGGGCATTAGTTGGGCTACAACCAGAAAATAATATGTTACTCGAAA
CGAAGTGCCCTGTTTTATATTAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:1118872..1120494+

>Gchil1595.t1 ID=Gchil1595.t1|Name=Gchil1595.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1623bp|location=Sequence derived from alignment at tig00004403_pilon:1118872..1120494+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAGACAATACAGAACAACGTAAAAAAAGCGTCAATAGAATTGCTGG
AGCAATCACGGCCTCGGGGAAACTCACCGTCAACAACGCTGACATTTCTG
TGGTCGAAGGGTACATTCGATCCCGTTTCGAGTACAATACGGTAAAAGCA
GTTGTAGATGACGCCGGCAACGTAGAAGCAACACCTATCAAACGAGTTTA
CCATTTTCGTACCGCGTCTAAGCCAAGAAAGTTGGGACTCTTACAAGTTG
GATGGGGTGGTAACAATGGGTCCACCGTTACTGCTGCTGTAGTAGCCAAC
CAGAATGATATTTCTTGGGAAACCAGGAATCAAACCCATGCTCCGAACTA
TAAAGGATCTCTGACTCAGGCAGCAACGCTACGAATTGGGTTCGACGAAC
ATGGTCATGATGTCTTTGTACCCTTCAAATCTGTTGTGCCGATGGCAGAG
CCCAACAATATTGTTCTGGGTGGCTGGGACATTTCCGGCCTCAACATGGC
AGATGCGATGGACCGAGCTGGGGTATTAGAACCGGATTTGAGGCGAAAGC
TTCGACCCTATATGGAAAACATGAAACCGTTACCCGCAGCATTTGATAAA
CGGTTTATCGCCAAGAACCAGACTTTTAGGGCTGATAATATTATTCAGAC
CGAAGACAAACAAGCGCAACTAGAGCAACTGAGAGAAGATATCCGCAACT
TCAAGAAGGATAACAACTTGGAGTATGTAGTGGTGGTATGGACTGGAAAT
TCGGAAAGGTATGCGATTGAAAGTGAGGGTGTAAACGACACCGCTGACAA
TCTATTAGCGTCCATTCAGGCGTCTGACACCGAAGTATCTCCATCGACTT
TATATTGCGCTGCTGCTATACTGGAAGGGTGTCCTTATATTAATGGCTCA
CCACAGAATACGTTTGTCCCTGGGACCGTGGAACTGGCAGAAAGGCACAG
CGTTCCTATATGTGGAGATGATTTCAAATCGGGTCAGACCAAAATGAAGT
CTGTGCTTGCTGACTACTTGATTGGATGTGGCGTAAAAATTAAGACGATG
GTAACATACAACCATCTCGGTAACAATGACATGTATCAGCTGACGGATGA
GGTAATGTGGAAACCAAAGTCGGCTTCGAAATCCCGGGTGATCGAAGACA
TTGTTGATTCAAACGGAACATTATACAAAGGTGGCGATGATGCTCCCGAT
CACATTGTTGTTGTGAAATATGTGCCGTATCTAGGTGATTCGAAGCGCGA
TGTGTCTGAATACACATCTGAGACGTTCATGGATTGTCACTACACAACAA
TAATGCATAACGAATGCTTAGATTCCGCGTTATGCGCACCGTTAATACTG
GATTTGGCAATATTCGCGGAATTGTTCACCCGAGTCGAGTACGGTGTGGA
GGATAGGAATGATCCGAAGAAGAACTTGGTATATTCACCAATGCAAAGTG
CATTGAGTGTGTTGGGTTTCTACATGAAGATACCGCGCACACCCGCCGGA
GAACCTATCATAAATGCCTTGGGTCGACAGAGAGCGTGTATTGAAAACAT
GTTGAGGGCATTAGTTGGGCTACAACCAGAAAATAATATGTTACTCGAAA
CGAAGTGCCCTGTTTTATATTAG
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