Gchil1601.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1601.t1
Unique NameGchil1601.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length159
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1132408..1132884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX47863
PFAMsTrigger_N
Max annot lvl2759|Eukaryota
Evalue1.66e-10
EggNOG OGs2E9TB@1|root,2SG42@2759|Eukaryota
DescriptionBacterial trigger factor protein (TF)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1601Gchil1601Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1132408..1132884 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1601.t1.stop1Gchil1601.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1132408..1132410 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1601.t1.CDS1Gchil1601.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1132408..1132884 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1601.t1.exon1Gchil1601.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1132408..1132884 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1601.t1.start1Gchil1601.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1132882..1132884 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1601.t1Gchil1601.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1132408..1132884 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1601.t1 ID=Gchil1601.t1|Name=Gchil1601.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=159bp
MTLLSHEKLDVVLSTEEGEVAKYKLELEIPASIPKEKRKESIQAVKKNAA
FKGFRKGTIPPFIMIEIEQFVLQDSCSAVIEDAAKELELRPVEGKDAMAK
LDFKDLRKRFRIGEDFVFTCEVQLQSITTEKPTEELEEIVSYKGEVPTID
ITKTPENR*
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spliced messenger RNA

>Gchil1601.t1 ID=Gchil1601.t1|Name=Gchil1601.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00004403_pilon:1132408..1132884- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCTGCTCTCGCATGAGAAACTTGATGTTGTTCTCAGTACAGAAGA
GGGAGAGGTTGCCAAGTACAAACTCGAGCTTGAAATTCCCGCATCCATAC
CTAAAGAGAAACGGAAAGAAAGCATCCAAGCTGTTAAGAAAAATGCCGCT
TTTAAAGGATTTCGAAAAGGAACCATCCCGCCGTTCATTATGATAGAAAT
TGAACAATTCGTATTACAAGACTCTTGCAGCGCTGTCATCGAAGATGCAG
CTAAGGAATTGGAACTTCGCCCTGTAGAAGGGAAGGATGCCATGGCGAAG
TTGGATTTCAAAGATTTGAGGAAACGCTTTCGCATTGGGGAGGATTTTGT
CTTCACATGCGAAGTACAACTGCAGTCGATCACCACAGAAAAACCAACCG
AAGAATTAGAAGAAATTGTGAGCTATAAAGGCGAGGTGCCCACCATTGAT
ATAACGAAGACGCCAGAAAATCGATGA
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protein sequence of Gchil1601.t1

>Gchil1601.t1 ID=Gchil1601.t1|Name=Gchil1601.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=159bp
MTLLSHEKLDVVLSTEEGEVAKYKLELEIPASIPKEKRKESIQAVKKNAA
FKGFRKGTIPPFIMIEIEQFVLQDSCSAVIEDAAKELELRPVEGKDAMAK
LDFKDLRKRFRIGEDFVFTCEVQLQSITTEKPTEELEEIVSYKGEVPTID
ITKTPENR*
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mRNA from alignment at tig00004403_pilon:1132408..1132884-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1601.t1 ID=Gchil1601.t1|Name=Gchil1601.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00004403_pilon:1132408..1132884- (Gracilaria chilensis NLEC103_M9 male)
ATGACCCTGCTCTCGCATGAGAAACTTGATGTTGTTCTCAGTACAGAAGA
GGGAGAGGTTGCCAAGTACAAACTCGAGCTTGAAATTCCCGCATCCATAC
CTAAAGAGAAACGGAAAGAAAGCATCCAAGCTGTTAAGAAAAATGCCGCT
TTTAAAGGATTTCGAAAAGGAACCATCCCGCCGTTCATTATGATAGAAAT
TGAACAATTCGTATTACAAGACTCTTGCAGCGCTGTCATCGAAGATGCAG
CTAAGGAATTGGAACTTCGCCCTGTAGAAGGGAAGGATGCCATGGCGAAG
TTGGATTTCAAAGATTTGAGGAAACGCTTTCGCATTGGGGAGGATTTTGT
CTTCACATGCGAAGTACAACTGCAGTCGATCACCACAGAAAAACCAACCG
AAGAATTAGAAGAAATTGTGAGCTATAAAGGCGAGGTGCCCACCATTGAT
ATAACGAAGACGCCAGAAAATCGATGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1132408..1132884-

>Gchil1601.t1 ID=Gchil1601.t1|Name=Gchil1601.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=477bp|location=Sequence derived from alignment at tig00004403_pilon:1132408..1132884- (Gracilaria chilensis NLEC103_M9 male)
ATGACCCTGCTCTCGCATGAGAAACTTGATGTTGTTCTCAGTACAGAAGA
GGGAGAGGTTGCCAAGTACAAACTCGAGCTTGAAATTCCCGCATCCATAC
CTAAAGAGAAACGGAAAGAAAGCATCCAAGCTGTTAAGAAAAATGCCGCT
TTTAAAGGATTTCGAAAAGGAACCATCCCGCCGTTCATTATGATAGAAAT
TGAACAATTCGTATTACAAGACTCTTGCAGCGCTGTCATCGAAGATGCAG
CTAAGGAATTGGAACTTCGCCCTGTAGAAGGGAAGGATGCCATGGCGAAG
TTGGATTTCAAAGATTTGAGGAAACGCTTTCGCATTGGGGAGGATTTTGT
CTTCACATGCGAAGTACAACTGCAGTCGATCACCACAGAAAAACCAACCG
AAGAATTAGAAGAAATTGTGAGCTATAAAGGCGAGGTGCCCACCATTGAT
ATAACGAAGACGCCAGAAAATCGATGA
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