Gchil1539.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1539.t1
Unique NameGchil1539.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length456
Homology
BLAST of Gchil1539.t1 vs. uniprot
Match: A0A2V3ISY7_9FLOR (Ribosome biogenesis protein NOP53 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISY7_9FLOR)

HSP 1 Score: 546 bits (1406), Expect = 2.720e-190
Identity = 296/457 (64.77%), Postives = 361/457 (78.99%), Query Frame = 0
Query:    1 MGKTGTKRKRKERETRTAAEVDEGKRYAATEQKLLGTSVTKDAADESIFVIDRKGNSKGKLDQQFRGQAVQQRRAAKRARRQAPKQRKSEAGVRPAEADAELITFVGRKKKDLISPVERQILAKKKFDKPEGHVGNRSSAVREMLRKKGEKADVWATGDEEDAEAG---LFEKKGTSEKRKRLEKKVHSRHRSAAPIVHPDSGLSVNPTHSDHQDILGETVACIIRHDDMRRWDENMMSYDPAILQESTEGEVADTGMKLDNSANESDDESEGDAVVMTQGAPERKTRAQRNKESRKRIMAANIARKKSDAKQVKDLENIENLTRQAEEEADKLSGVTKKRLRKENPPPPRSAYAPVRRKICGEYVRSERVRIPVTLSTELSESMRNVKMPKANPLVRDRFLSFERRGFIAPPRVLPKELRRMARDKLREERKDRRKRKGRGSASDLTFWRNGKRAV 454
            MGKTGTKRKR+ERE R A EV++GKR  A E+KLLGT+V + AAD  +F IDRKG SK  L Q+F GQA+QQRRAAKRARR APK+RKSEA ++ AE   + + F GRK K  I  VE++ILAK+ FDKPEGHVGNRS+ VR  L+ KG+K D+W T D++  + G   L EK+G + +R+RLE  +H+ HRSA  IVHPDSGLS+NPTHSDHQD+LGE +A I+R DD RRW+E  MSYDPAIL+ESTEG +AD GMK+DN + +S+DESE + +VM QGAP+RKTRAQRNKE+RKR+MA NIA+KK+ AKQ KD ENIE + R+AE EADK++G+ K+R+  + P       APV  K+ G  VR E+  IPVTLSTELSESMR VKMP ANPL RDRFLSFERRGFI PP+VLPKE+RRM+RDKLREERKDRR+RKGRG+ASDLTFWR GK+A+
Sbjct:    1 MGKTGTKRKRRERENRVAGEVEDGKRAVAIEKKLLGTAVNEYAADHVLFTIDRKGKSKDALAQKFHGQALQQRRAAKRARRHAPKERKSEAAIKTAETSTDNVLFKGRKNKANIPSVEQRILAKRSFDKPEGHVGNRSAVVRVTLQNKGKKDDLWNTTDDKQEQDGSDLLSEKQGIANRRRRLEGAIHAVHRSAPHIVHPDSGLSINPTHSDHQDVLGEALAEIVRKDDDRRWNEKKMSYDPAILEESTEGILADIGMKVDNQSEQSEDESEDEVLVMHQGAPDRKTRAQRNKEARKRVMACNIAKKKAAAKQDKDFENIEEIRRKAETEADKINGIAKERMLAKKPSQDHGMDAPVLTKVAGVKVRVEKANIPVTLSTELSESMRKVKMPTANPLARDRFLSFERRGFIVPPKVLPKEIRRMSRDKLREERKDRRRRKGRGAASDLTFWRRGKKAI 457          
BLAST of Gchil1539.t1 vs. uniprot
Match: R7QTR3_CHOCR (Ribosome biogenesis protein NOP53 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTR3_CHOCR)

HSP 1 Score: 402 bits (1033), Expect = 6.340e-134
Identity = 230/456 (50.44%), Postives = 310/456 (67.98%), Query Frame = 0
Query:    1 MGKTGTKRKRKERETRTAAEVDEGKRYAATEQKLLGTSVTKDAADESIFVIDRKGNSKGKLDQQFRGQAVQQRRAAKRARRQAPKQRKSEAGVRPAEADAELITFVGRKKKDLISPVERQILAKKKFDKPEGHVGNRSSAVREMLRKKGEKADVWATGDEEDAEAGLFEKKGTSEKRKRLEKKVHSRHRSAAPIVHPDSGLSVNPTHSDHQDILGETVACIIRHDDMRRWDENMMSYDPAILQESTEGEVADTGMKLDNSA-NESDDESEGDAVVMTQGAPERKTRAQRNKESRKRIMAANIARKKSDAKQVKDLENIENLTRQAEEEADKLSGVTKKRLRKENPPPPRSAYAPVRRKICGEYVRSERVRIPVTLSTELSESMRNVKMPKANPLVRDRFLSFERRGFIAPPRVLPKELRRMARDKLREERKDRRKRKGRGSASDLTFWRNGKRAVL 455
            M   GTKRKR++R  R AA +++G+   A E+K LG  ++    D  +FV DR+G  K ++ Q+   QA + RRAAKRARR  PK RKSE  +  +   A      G++KK  +  VE +ILAK+KFDKP GHVGNRS  +R+    K    DVW      + E         S+ R+RLE KV+  HRSA  ++HP  G+S+NPTH DHQD LGE +A I+R DD   W    M +DPA+L ESTEGEV  TGMK  + A ++S+   + D+++ T   P+RKTR+QR+KE+RKR M +NIA+KK+ A++V +L+N++ + R+A++ ADKLSG  K R  +ENPPP +  + P+  K+ G+ VR+E V  PVTLS ELSESMR VKMP ANPL+RDRF+SFERRG IAPP+VLPKE+ RM + K ++ERKD+RKRKGRGS S++TFWRNGK+A+L
Sbjct:    1 MVSAGTKRKRRDRGNRVAAAIEDGRIRGARERKTLGKVISASVPDTELFVEDRRGKEKAEVQQELLAQAAEDRRAAKRARRAVPKVRKSEGALGKSVPIASTSDLAGKRKKKGLGIVEVEILAKRKFDKPRGHVGNRSEVIRQQKLHKDGMEDVW------NGEMSRKVADEISQNRRRLEGKVNVIHRSAPSVIHPAQGMSINPTHGDHQDKLGEALADIVRKDDDDEWTATKMKFDPALLAESTEGEVLGTGMKAASDAPDDSESSDDEDSIIRT--VPQRKTRSQRHKEARKREMVSNIAKKKASARRVAELQNVDEIAREAKKLADKLSGEEKLRQLRENPPPAKKVHEPIFAKVAGQKVRNETVVEPVTLSAELSESMRRVKMPIANPLLRDRFVSFERRGLIAPPKVLPKEIWRMEQAKRQDERKDKRKRKGRGSRSNMTFWRNGKKAIL 448          
BLAST of Gchil1539.t1 vs. uniprot
Match: A0A7S3EL21_9RHOD (Ribosome biogenesis protein NOP53 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EL21_9RHOD)

HSP 1 Score: 82.4 bits (202), Expect = 2.230e-13
Identity = 84/278 (30.22%), Postives = 129/278 (46.40%), Query Frame = 0
Query:  153 DVWATGDEEDAEAGLFEKKGTSEKRKRLEKKVHSRHRSAAPIVHPDSGLSVNPTHSDHQDILGETVACIIRHDDMRRWDENMMSYDPAILQESTEGEVADTGMKLDNSANESDDESEGDAVVMTQGAPERKTRAQRNKESRKRIMAANIARKKSDAKQVKDLENIENLTRQAEE----EADKLSGVTK--------------------KRLRKENPPPPRSAYAPVRRKICGEYVRSERVRIPVTLSTELSESMRNVKMPKANPLVRDRFLSFERRGF 406
            DVW+   EEDA+ G + K    +K   L+ K  +    A   V P  G S+NP+ SDHQ++LGE V+ ++R +  R W    +          TE + A     L     +  ++  G A       PE+KTR +RN+E R++        +K+  K   D+E I  + ++ EE    +ADK+  + K                    K++R+E           VRR+I G  V    + +P+T   EL + +R  K+ K N LVRDRF+S +RRGF
Sbjct:  144 DVWSV-PEEDADVGNWWKLQVKKKNLPLDDKQGASGSQAGDQVAPP-GASINPSFSDHQNLLGEAVSQVVRREHERNWVREKLYVG------ETEHDKATIPQHLAEITPDKAEDGPGSAKTN----PEKKTRTERNREMRRKRSEQESELRKAKRKLRGDVERIHEIEKEIEESARPDADKVISLLKMLRPCGAARQLSLLYIFSQVKKMRREV----------VRRRIAGRKVPDREITVPLT--EELGKDLRRAKV-KGN-LVRDRFVSLQRRGF 395          
The following BLAST results are available for this feature:
BLAST of Gchil1539.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3ISY7_9FLOR2.720e-19064.77Ribosome biogenesis protein NOP53 n=1 Tax=Gracilar... [more]
R7QTR3_CHOCR6.340e-13450.44Ribosome biogenesis protein NOP53 n=1 Tax=Chondrus... [more]
A0A7S3EL21_9RHOD2.230e-1330.22Ribosome biogenesis protein NOP53 n=2 Tax=Rhodosor... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 314..337
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 256..294
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 420..443
NoneNo IPR availablePANTHERPTHR14211:SF7RIBOSOME BIOGENESIS PROTEIN NOP53coord: 6..412
IPR011687Ribosome biogenesis protein Nop53/GLTSCR2PIRSFPIRSF017302Gltscr2coord: 2..446
e-value: 1.1E-13
score: 48.9
IPR011687Ribosome biogenesis protein Nop53/GLTSCR2PFAMPF07767Nop53coord: 20..400
e-value: 1.3E-25
score: 90.6
IPR011687Ribosome biogenesis protein Nop53/GLTSCR2PANTHERPTHR14211GLIOMA SUPPRESSOR CANDIDATE REGION GENE 2coord: 6..412

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:817032..818399 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1539.t1Gchil1539.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004403_pilon 817032..818399 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1539.t1 ID=Gchil1539.t1|Name=Gchil1539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=456bp
MGKTGTKRKRKERETRTAAEVDEGKRYAATEQKLLGTSVTKDAADESIFV
IDRKGNSKGKLDQQFRGQAVQQRRAAKRARRQAPKQRKSEAGVRPAEADA
ELITFVGRKKKDLISPVERQILAKKKFDKPEGHVGNRSSAVREMLRKKGE
KADVWATGDEEDAEAGLFEKKGTSEKRKRLEKKVHSRHRSAAPIVHPDSG
LSVNPTHSDHQDILGETVACIIRHDDMRRWDENMMSYDPAILQESTEGEV
ADTGMKLDNSANESDDESEGDAVVMTQGAPERKTRAQRNKESRKRIMAAN
IARKKSDAKQVKDLENIENLTRQAEEEADKLSGVTKKRLRKENPPPPRSA
YAPVRRKICGEYVRSERVRIPVTLSTELSESMRNVKMPKANPLVRDRFLS
FERRGFIAPPRVLPKELRRMARDKLREERKDRRKRKGRGSASDLTFWRNG
KRAVL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011687Nop53/GLTSCR2