Gchil1539.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1539.t1
Unique Name	Gchil1539.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	456

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:817032..818399 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	164328.Phyra87757
PFAMs	Nop53
Max annot lvl	4776\|Peronosporales
KEGG ko	ko:K14840
KEGG Pathway	ko05168,map05168
Evalue	5.52e-06
EggNOG OGs	KOG2823@1\|root,KOG2823@2759\|Eukaryota,3QBIB@4776\|Peronosporales
Description	Nop53 (60S ribosomal biogenesis)
COG category	S
BRITE	ko00000,ko00001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1539	Gchil1539	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 817032..818399 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1539.t1.start1	Gchil1539.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 817032..817034 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1539.t1.CDS1	Gchil1539.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 817032..818399 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1539.t1.exon1	Gchil1539.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 817032..818399 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1539.t1.stop1	Gchil1539.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 818397..818399 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1539.t1	Gchil1539.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 817032..818399 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:817032..818399+
coding sequence from alignment at tig00004403_pilon:817032..818399+

mRNA sequence

>Gchil1539.t1 ID=Gchil1539.t1|Name=Gchil1539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=456bp
MGKTGTKRKRKERETRTAAEVDEGKRYAATEQKLLGTSVTKDAADESIFV
IDRKGNSKGKLDQQFRGQAVQQRRAAKRARRQAPKQRKSEAGVRPAEADA
ELITFVGRKKKDLISPVERQILAKKKFDKPEGHVGNRSSAVREMLRKKGE
KADVWATGDEEDAEAGLFEKKGTSEKRKRLEKKVHSRHRSAAPIVHPDSG
LSVNPTHSDHQDILGETVACIIRHDDMRRWDENMMSYDPAILQESTEGEV
ADTGMKLDNSANESDDESEGDAVVMTQGAPERKTRAQRNKESRKRIMAAN
IARKKSDAKQVKDLENIENLTRQAEEEADKLSGVTKKRLRKENPPPPRSA
YAPVRRKICGEYVRSERVRIPVTLSTELSESMRNVKMPKANPLVRDRFLS
FERRGFIAPPRVLPKELRRMARDKLREERKDRRKRKGRGSASDLTFWRNG
KRAVL*

spliced messenger RNA

>Gchil1539.t1 ID=Gchil1539.t1|Name=Gchil1539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00004403_pilon:817032..818399+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTAAAACCGGAACAAAGCGGAAGCGAAAGGAGCGTGAAACTCGCAC
TGCAGCCGAGGTGGACGAAGGGAAACGGTATGCGGCAACAGAACAGAAGC
TACTTGGAACTAGCGTGACGAAAGATGCGGCAGACGAATCAATCTTTGTT
ATCGATAGAAAAGGAAACTCAAAGGGAAAATTGGATCAGCAATTTCGAGG
CCAAGCCGTGCAACAAAGAAGGGCGGCGAAACGGGCCCGGCGCCAAGCTC
CGAAGCAAAGGAAATCTGAAGCAGGCGTTAGACCCGCCGAAGCTGATGCG
GAACTCATCACGTTCGTTGGTAGGAAAAAGAAGGATTTAATAAGTCCGGT
CGAGAGACAAATATTGGCCAAGAAGAAATTCGACAAACCAGAAGGTCACG
TTGGGAACAGGAGTTCCGCAGTCCGGGAAATGTTACGAAAGAAAGGTGAA
AAGGCGGATGTCTGGGCTACAGGTGACGAAGAAGATGCAGAAGCAGGTTT
ATTTGAAAAGAAGGGCACTTCAGAGAAGAGGAAAAGATTAGAGAAGAAGG
TACATTCTCGTCACAGATCGGCAGCACCTATTGTACATCCTGATAGCGGT
TTGAGCGTTAACCCAACCCACTCCGATCATCAAGATATACTTGGTGAAAC
AGTAGCATGTATTATACGGCATGACGATATGAGACGCTGGGATGAAAATA
TGATGAGCTACGACCCAGCTATTTTGCAAGAAAGCACAGAAGGCGAGGTT
GCCGACACTGGAATGAAACTGGACAACAGTGCGAATGAGTCCGATGACGA
AAGTGAAGGTGATGCAGTGGTCATGACCCAGGGCGCACCGGAGCGTAAGA
CGAGAGCACAGCGGAACAAAGAGTCTCGGAAGCGCATTATGGCTGCCAAT
ATAGCCAGAAAGAAGTCTGATGCGAAGCAGGTTAAAGATCTTGAGAACAT
AGAGAACCTAACGCGCCAGGCTGAAGAAGAGGCAGATAAACTAAGCGGAG
TAACAAAGAAGAGATTGCGGAAAGAGAATCCTCCACCGCCTCGAAGTGCT
TATGCACCAGTAAGGCGTAAGATATGTGGAGAATATGTTCGGAGTGAGAG
GGTTCGCATCCCCGTGACTTTGAGCACAGAGCTTTCAGAAAGCATGCGAA
ACGTGAAGATGCCCAAAGCAAACCCACTTGTCCGTGACAGGTTTCTTAGC
TTTGAGAGGAGAGGATTTATAGCACCTCCAAGGGTTTTGCCCAAGGAACT
CCGCAGAATGGCTAGGGACAAGCTTCGAGAGGAAAGAAAAGATAGAAGGA
AACGAAAGGGGAGGGGGAGTGCGTCCGACCTTACGTTTTGGAGGAATGGG
AAGAGGGCTGTGCTGTAG

protein sequence of Gchil1539.t1

>Gchil1539.t1 ID=Gchil1539.t1|Name=Gchil1539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=456bp
MGKTGTKRKRKERETRTAAEVDEGKRYAATEQKLLGTSVTKDAADESIFV
IDRKGNSKGKLDQQFRGQAVQQRRAAKRARRQAPKQRKSEAGVRPAEADA
ELITFVGRKKKDLISPVERQILAKKKFDKPEGHVGNRSSAVREMLRKKGE
KADVWATGDEEDAEAGLFEKKGTSEKRKRLEKKVHSRHRSAAPIVHPDSG
LSVNPTHSDHQDILGETVACIIRHDDMRRWDENMMSYDPAILQESTEGEV
ADTGMKLDNSANESDDESEGDAVVMTQGAPERKTRAQRNKESRKRIMAAN
IARKKSDAKQVKDLENIENLTRQAEEEADKLSGVTKKRLRKENPPPPRSA
YAPVRRKICGEYVRSERVRIPVTLSTELSESMRNVKMPKANPLVRDRFLS
FERRGFIAPPRVLPKELRRMARDKLREERKDRRKRKGRGSASDLTFWRNG
KRAVL*

mRNA from alignment at tig00004403_pilon:817032..818399+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1539.t1 ID=Gchil1539.t1|Name=Gchil1539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00004403_pilon:817032..818399+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTAAAACCGGAACAAAGCGGAAGCGAAAGGAGCGTGAAACTCGCAC
TGCAGCCGAGGTGGACGAAGGGAAACGGTATGCGGCAACAGAACAGAAGC
TACTTGGAACTAGCGTGACGAAAGATGCGGCAGACGAATCAATCTTTGTT
ATCGATAGAAAAGGAAACTCAAAGGGAAAATTGGATCAGCAATTTCGAGG
CCAAGCCGTGCAACAAAGAAGGGCGGCGAAACGGGCCCGGCGCCAAGCTC
CGAAGCAAAGGAAATCTGAAGCAGGCGTTAGACCCGCCGAAGCTGATGCG
GAACTCATCACGTTCGTTGGTAGGAAAAAGAAGGATTTAATAAGTCCGGT
CGAGAGACAAATATTGGCCAAGAAGAAATTCGACAAACCAGAAGGTCACG
TTGGGAACAGGAGTTCCGCAGTCCGGGAAATGTTACGAAAGAAAGGTGAA
AAGGCGGATGTCTGGGCTACAGGTGACGAAGAAGATGCAGAAGCAGGTTT
ATTTGAAAAGAAGGGCACTTCAGAGAAGAGGAAAAGATTAGAGAAGAAGG
TACATTCTCGTCACAGATCGGCAGCACCTATTGTACATCCTGATAGCGGT
TTGAGCGTTAACCCAACCCACTCCGATCATCAAGATATACTTGGTGAAAC
AGTAGCATGTATTATACGGCATGACGATATGAGACGCTGGGATGAAAATA
TGATGAGCTACGACCCAGCTATTTTGCAAGAAAGCACAGAAGGCGAGGTT
GCCGACACTGGAATGAAACTGGACAACAGTGCGAATGAGTCCGATGACGA
AAGTGAAGGTGATGCAGTGGTCATGACCCAGGGCGCACCGGAGCGTAAGA
CGAGAGCACAGCGGAACAAAGAGTCTCGGAAGCGCATTATGGCTGCCAAT
ATAGCCAGAAAGAAGTCTGATGCGAAGCAGGTTAAAGATCTTGAGAACAT
AGAGAACCTAACGCGCCAGGCTGAAGAAGAGGCAGATAAACTAAGCGGAG
TAACAAAGAAGAGATTGCGGAAAGAGAATCCTCCACCGCCTCGAAGTGCT
TATGCACCAGTAAGGCGTAAGATATGTGGAGAATATGTTCGGAGTGAGAG
GGTTCGCATCCCCGTGACTTTGAGCACAGAGCTTTCAGAAAGCATGCGAA
ACGTGAAGATGCCCAAAGCAAACCCACTTGTCCGTGACAGGTTTCTTAGC
TTTGAGAGGAGAGGATTTATAGCACCTCCAAGGGTTTTGCCCAAGGAACT
CCGCAGAATGGCTAGGGACAAGCTTCGAGAGGAAAGAAAAGATAGAAGGA
AACGAAAGGGGAGGGGGAGTGCGTCCGACCTTACGTTTTGGAGGAATGGG
AAGAGGGCTGTGCTGTAG

Coding sequence (CDS) from alignment at tig00004403_pilon:817032..818399+

>Gchil1539.t1 ID=Gchil1539.t1|Name=Gchil1539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1368bp|location=Sequence derived from alignment at tig00004403_pilon:817032..818399+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTAAAACCGGAACAAAGCGGAAGCGAAAGGAGCGTGAAACTCGCAC
TGCAGCCGAGGTGGACGAAGGGAAACGGTATGCGGCAACAGAACAGAAGC
TACTTGGAACTAGCGTGACGAAAGATGCGGCAGACGAATCAATCTTTGTT
ATCGATAGAAAAGGAAACTCAAAGGGAAAATTGGATCAGCAATTTCGAGG
CCAAGCCGTGCAACAAAGAAGGGCGGCGAAACGGGCCCGGCGCCAAGCTC
CGAAGCAAAGGAAATCTGAAGCAGGCGTTAGACCCGCCGAAGCTGATGCG
GAACTCATCACGTTCGTTGGTAGGAAAAAGAAGGATTTAATAAGTCCGGT
CGAGAGACAAATATTGGCCAAGAAGAAATTCGACAAACCAGAAGGTCACG
TTGGGAACAGGAGTTCCGCAGTCCGGGAAATGTTACGAAAGAAAGGTGAA
AAGGCGGATGTCTGGGCTACAGGTGACGAAGAAGATGCAGAAGCAGGTTT
ATTTGAAAAGAAGGGCACTTCAGAGAAGAGGAAAAGATTAGAGAAGAAGG
TACATTCTCGTCACAGATCGGCAGCACCTATTGTACATCCTGATAGCGGT
TTGAGCGTTAACCCAACCCACTCCGATCATCAAGATATACTTGGTGAAAC
AGTAGCATGTATTATACGGCATGACGATATGAGACGCTGGGATGAAAATA
TGATGAGCTACGACCCAGCTATTTTGCAAGAAAGCACAGAAGGCGAGGTT
GCCGACACTGGAATGAAACTGGACAACAGTGCGAATGAGTCCGATGACGA
AAGTGAAGGTGATGCAGTGGTCATGACCCAGGGCGCACCGGAGCGTAAGA
CGAGAGCACAGCGGAACAAAGAGTCTCGGAAGCGCATTATGGCTGCCAAT
ATAGCCAGAAAGAAGTCTGATGCGAAGCAGGTTAAAGATCTTGAGAACAT
AGAGAACCTAACGCGCCAGGCTGAAGAAGAGGCAGATAAACTAAGCGGAG
TAACAAAGAAGAGATTGCGGAAAGAGAATCCTCCACCGCCTCGAAGTGCT
TATGCACCAGTAAGGCGTAAGATATGTGGAGAATATGTTCGGAGTGAGAG
GGTTCGCATCCCCGTGACTTTGAGCACAGAGCTTTCAGAAAGCATGCGAA
ACGTGAAGATGCCCAAAGCAAACCCACTTGTCCGTGACAGGTTTCTTAGC
TTTGAGAGGAGAGGATTTATAGCACCTCCAAGGGTTTTGCCCAAGGAACT
CCGCAGAATGGCTAGGGACAAGCTTCGAGAGGAAAGAAAAGATAGAAGGA
AACGAAAGGGGAGGGGGAGTGCGTCCGACCTTACGTTTTGGAGGAATGGG
AAGAGGGCTGTGCTGTAG