Gchil1689.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1689.t1
Unique NameGchil1689.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length582
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1727579..1729324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0233661
Max annot lvl554915|Amoebozoa
Evalue6.8e-15
EggNOG OGsCOG5347@1|root,KOG0702@2759|Eukaryota,3XDTT@554915|Amoebozoa
DescriptionGTPase activator activity
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1689Gchil1689Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1727579..1729324 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1689.t1.stop1Gchil1689.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1727579..1727581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1689.t1.CDS1Gchil1689.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1727579..1729324 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1689.t1.exon1Gchil1689.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1727579..1729324 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1689.t1.start1Gchil1689.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1729322..1729324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1689.t1Gchil1689.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1727579..1729324 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1689.t1 ID=Gchil1689.t1|Name=Gchil1689.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=582bp
MSSRYVSRAAQDAEHALRDVQARLEGNQYCADCGVHRPEFINLTIGTFIC
EVCADFHRNSSNRKIKDVFGGELTQDDVRRIDSVGNDMANRKFLAVWNTR
EFPEPDRRNREALREFLWLKYEGIFKRKQSNPSPPQPDPPSRAYYDNKSY
EPERSRGERSMRREQELFRNGPAPPGRAKGYWSSRLGDQRPPPPPPQQMA
MPAPEQVRRRDDYYGRPMNPPSYPDRYRTTAPQDRFQPPQPTPVVPYGFP
RNPRARYREEAYEDYASNSSSRDRERRHSERSSTKPSSQDSYSDGEDEDD
RRSRKKKSAKERSKGRKKNSGSIDSDEEYENDDYEDEDHEDGYKKKRSKK
SKKKSSKEGRSKRRNDEYEENGSYDEEDRSSEEEEASRKSKKKSSKRDDS
GNRPTETWGFDLMSEWMGDAKEESVRPANPIASGANAGQNIPQAMQQAYQ
TAQIPMMPPMSMYGSVMPMPGGGFMPMMPPPGMMPPPMGMPGMPGMPGMP
GMPPIPPGMMGGIPPMPNAPNMPQGGGMSGVPGLINGMHNLNMNTRPHPV
GPATTQPPPPPPVGMPAGPPPGPPPDPPAKS*
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spliced messenger RNA

>Gchil1689.t1 ID=Gchil1689.t1|Name=Gchil1689.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1746bp|location=Sequence derived from alignment at tig00004403_pilon:1727579..1729324- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCGCGCTACGTCTCGCGCGCGGCACAGGACGCCGAGCATGCGCT
CAGGGACGTGCAAGCGAGGCTAGAGGGCAATCAATACTGCGCCGACTGCG
GTGTGCACCGCCCTGAGTTCATAAATCTCACCATCGGCACTTTCATCTGT
GAGGTGTGTGCTGACTTTCATCGTAATTCTTCCAACAGAAAGATAAAAGA
TGTCTTCGGCGGCGAGCTCACTCAAGACGATGTGCGTCGCATAGACTCGG
TCGGCAATGACATGGCTAACCGGAAGTTCCTCGCCGTTTGGAACACCCGC
GAGTTTCCAGAACCCGACAGAAGAAACAGAGAAGCTTTGCGCGAGTTTCT
CTGGCTCAAGTATGAGGGAATATTCAAGAGGAAACAATCAAATCCCTCGC
CACCTCAACCAGACCCTCCGTCGCGTGCTTACTACGACAACAAGTCTTAC
GAACCCGAGCGTTCCAGGGGAGAACGCTCGATGCGTCGGGAGCAAGAGCT
CTTCCGCAACGGTCCTGCGCCTCCAGGTCGAGCAAAGGGCTACTGGTCCT
CCAGATTGGGTGATCAGCGACCTCCTCCTCCCCCACCGCAACAAATGGCC
ATGCCTGCCCCGGAGCAAGTGCGCAGACGAGATGACTACTATGGAAGACC
CATGAATCCTCCATCGTACCCAGATCGATATCGCACAACTGCTCCACAAG
ACCGATTTCAGCCTCCCCAACCAACTCCTGTTGTTCCTTACGGATTTCCA
CGGAATCCCCGTGCAAGATACCGCGAGGAGGCGTATGAGGATTATGCTAG
CAATTCGAGTAGTCGCGATCGTGAGCGTCGCCACTCGGAGAGGAGCTCAA
CAAAGCCAAGCAGTCAAGACTCCTATAGTGACGGGGAAGACGAGGATGAC
CGTCGAAGCCGGAAGAAGAAGTCGGCCAAGGAACGTTCGAAAGGTAGAAA
GAAGAACAGCGGATCTATTGACAGTGATGAAGAGTACGAAAACGATGATT
ATGAGGACGAAGACCACGAAGACGGATACAAAAAGAAGAGATCTAAGAAA
TCAAAGAAAAAGTCTTCAAAGGAAGGACGAAGCAAGCGAAGGAATGACGA
ATACGAAGAGAATGGTTCATATGATGAAGAAGATCGTTCCTCAGAGGAGG
AGGAGGCTAGTCGAAAGTCTAAGAAAAAGTCTTCAAAACGTGATGATTCT
GGGAATAGACCAACTGAAACTTGGGGTTTTGACCTCATGTCAGAATGGAT
GGGGGACGCCAAAGAAGAGAGCGTGCGACCGGCGAATCCTATCGCAAGCG
GAGCTAATGCAGGACAGAACATTCCCCAAGCTATGCAGCAAGCTTATCAG
ACTGCTCAAATACCGATGATGCCACCCATGTCGATGTATGGTAGTGTTAT
GCCAATGCCAGGAGGTGGGTTCATGCCAATGATGCCACCACCTGGCATGA
TGCCGCCGCCCATGGGAATGCCCGGTATGCCCGGTATGCCCGGTATGCCC
GGAATGCCTCCAATACCACCCGGAATGATGGGTGGCATACCGCCAATGCC
AAACGCTCCCAACATGCCTCAAGGTGGTGGGATGTCAGGTGTTCCAGGCC
TAATTAACGGAATGCACAACTTGAACATGAATACCAGACCACACCCAGTC
GGACCTGCCACAACCCAACCTCCTCCTCCACCACCTGTGGGAATGCCAGC
GGGCCCCCCGCCTGGTCCTCCTCCGGACCCTCCAGCGAAGTCGTAG
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protein sequence of Gchil1689.t1

>Gchil1689.t1 ID=Gchil1689.t1|Name=Gchil1689.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=582bp
MSSRYVSRAAQDAEHALRDVQARLEGNQYCADCGVHRPEFINLTIGTFIC
EVCADFHRNSSNRKIKDVFGGELTQDDVRRIDSVGNDMANRKFLAVWNTR
EFPEPDRRNREALREFLWLKYEGIFKRKQSNPSPPQPDPPSRAYYDNKSY
EPERSRGERSMRREQELFRNGPAPPGRAKGYWSSRLGDQRPPPPPPQQMA
MPAPEQVRRRDDYYGRPMNPPSYPDRYRTTAPQDRFQPPQPTPVVPYGFP
RNPRARYREEAYEDYASNSSSRDRERRHSERSSTKPSSQDSYSDGEDEDD
RRSRKKKSAKERSKGRKKNSGSIDSDEEYENDDYEDEDHEDGYKKKRSKK
SKKKSSKEGRSKRRNDEYEENGSYDEEDRSSEEEEASRKSKKKSSKRDDS
GNRPTETWGFDLMSEWMGDAKEESVRPANPIASGANAGQNIPQAMQQAYQ
TAQIPMMPPMSMYGSVMPMPGGGFMPMMPPPGMMPPPMGMPGMPGMPGMP
GMPPIPPGMMGGIPPMPNAPNMPQGGGMSGVPGLINGMHNLNMNTRPHPV
GPATTQPPPPPPVGMPAGPPPGPPPDPPAKS*
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mRNA from alignment at tig00004403_pilon:1727579..1729324-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1689.t1 ID=Gchil1689.t1|Name=Gchil1689.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1746bp|location=Sequence derived from alignment at tig00004403_pilon:1727579..1729324- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCTCGCGCTACGTCTCGCGCGCGGCACAGGACGCCGAGCATGCGCT
CAGGGACGTGCAAGCGAGGCTAGAGGGCAATCAATACTGCGCCGACTGCG
GTGTGCACCGCCCTGAGTTCATAAATCTCACCATCGGCACTTTCATCTGT
GAGGTGTGTGCTGACTTTCATCGTAATTCTTCCAACAGAAAGATAAAAGA
TGTCTTCGGCGGCGAGCTCACTCAAGACGATGTGCGTCGCATAGACTCGG
TCGGCAATGACATGGCTAACCGGAAGTTCCTCGCCGTTTGGAACACCCGC
GAGTTTCCAGAACCCGACAGAAGAAACAGAGAAGCTTTGCGCGAGTTTCT
CTGGCTCAAGTATGAGGGAATATTCAAGAGGAAACAATCAAATCCCTCGC
CACCTCAACCAGACCCTCCGTCGCGTGCTTACTACGACAACAAGTCTTAC
GAACCCGAGCGTTCCAGGGGAGAACGCTCGATGCGTCGGGAGCAAGAGCT
CTTCCGCAACGGTCCTGCGCCTCCAGGTCGAGCAAAGGGCTACTGGTCCT
CCAGATTGGGTGATCAGCGACCTCCTCCTCCCCCACCGCAACAAATGGCC
ATGCCTGCCCCGGAGCAAGTGCGCAGACGAGATGACTACTATGGAAGACC
CATGAATCCTCCATCGTACCCAGATCGATATCGCACAACTGCTCCACAAG
ACCGATTTCAGCCTCCCCAACCAACTCCTGTTGTTCCTTACGGATTTCCA
CGGAATCCCCGTGCAAGATACCGCGAGGAGGCGTATGAGGATTATGCTAG
CAATTCGAGTAGTCGCGATCGTGAGCGTCGCCACTCGGAGAGGAGCTCAA
CAAAGCCAAGCAGTCAAGACTCCTATAGTGACGGGGAAGACGAGGATGAC
CGTCGAAGCCGGAAGAAGAAGTCGGCCAAGGAACGTTCGAAAGGTAGAAA
GAAGAACAGCGGATCTATTGACAGTGATGAAGAGTACGAAAACGATGATT
ATGAGGACGAAGACCACGAAGACGGATACAAAAAGAAGAGATCTAAGAAA
TCAAAGAAAAAGTCTTCAAAGGAAGGACGAAGCAAGCGAAGGAATGACGA
ATACGAAGAGAATGGTTCATATGATGAAGAAGATCGTTCCTCAGAGGAGG
AGGAGGCTAGTCGAAAGTCTAAGAAAAAGTCTTCAAAACGTGATGATTCT
GGGAATAGACCAACTGAAACTTGGGGTTTTGACCTCATGTCAGAATGGAT
GGGGGACGCCAAAGAAGAGAGCGTGCGACCGGCGAATCCTATCGCAAGCG
GAGCTAATGCAGGACAGAACATTCCCCAAGCTATGCAGCAAGCTTATCAG
ACTGCTCAAATACCGATGATGCCACCCATGTCGATGTATGGTAGTGTTAT
GCCAATGCCAGGAGGTGGGTTCATGCCAATGATGCCACCACCTGGCATGA
TGCCGCCGCCCATGGGAATGCCCGGTATGCCCGGTATGCCCGGTATGCCC
GGAATGCCTCCAATACCACCCGGAATGATGGGTGGCATACCGCCAATGCC
AAACGCTCCCAACATGCCTCAAGGTGGTGGGATGTCAGGTGTTCCAGGCC
TAATTAACGGAATGCACAACTTGAACATGAATACCAGACCACACCCAGTC
GGACCTGCCACAACCCAACCTCCTCCTCCACCACCTGTGGGAATGCCAGC
GGGCCCCCCGCCTGGTCCTCCTCCGGACCCTCCAGCGAAGTCGTAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:1727579..1729324-

>Gchil1689.t1 ID=Gchil1689.t1|Name=Gchil1689.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1746bp|location=Sequence derived from alignment at tig00004403_pilon:1727579..1729324- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCTCGCGCTACGTCTCGCGCGCGGCACAGGACGCCGAGCATGCGCT
CAGGGACGTGCAAGCGAGGCTAGAGGGCAATCAATACTGCGCCGACTGCG
GTGTGCACCGCCCTGAGTTCATAAATCTCACCATCGGCACTTTCATCTGT
GAGGTGTGTGCTGACTTTCATCGTAATTCTTCCAACAGAAAGATAAAAGA
TGTCTTCGGCGGCGAGCTCACTCAAGACGATGTGCGTCGCATAGACTCGG
TCGGCAATGACATGGCTAACCGGAAGTTCCTCGCCGTTTGGAACACCCGC
GAGTTTCCAGAACCCGACAGAAGAAACAGAGAAGCTTTGCGCGAGTTTCT
CTGGCTCAAGTATGAGGGAATATTCAAGAGGAAACAATCAAATCCCTCGC
CACCTCAACCAGACCCTCCGTCGCGTGCTTACTACGACAACAAGTCTTAC
GAACCCGAGCGTTCCAGGGGAGAACGCTCGATGCGTCGGGAGCAAGAGCT
CTTCCGCAACGGTCCTGCGCCTCCAGGTCGAGCAAAGGGCTACTGGTCCT
CCAGATTGGGTGATCAGCGACCTCCTCCTCCCCCACCGCAACAAATGGCC
ATGCCTGCCCCGGAGCAAGTGCGCAGACGAGATGACTACTATGGAAGACC
CATGAATCCTCCATCGTACCCAGATCGATATCGCACAACTGCTCCACAAG
ACCGATTTCAGCCTCCCCAACCAACTCCTGTTGTTCCTTACGGATTTCCA
CGGAATCCCCGTGCAAGATACCGCGAGGAGGCGTATGAGGATTATGCTAG
CAATTCGAGTAGTCGCGATCGTGAGCGTCGCCACTCGGAGAGGAGCTCAA
CAAAGCCAAGCAGTCAAGACTCCTATAGTGACGGGGAAGACGAGGATGAC
CGTCGAAGCCGGAAGAAGAAGTCGGCCAAGGAACGTTCGAAAGGTAGAAA
GAAGAACAGCGGATCTATTGACAGTGATGAAGAGTACGAAAACGATGATT
ATGAGGACGAAGACCACGAAGACGGATACAAAAAGAAGAGATCTAAGAAA
TCAAAGAAAAAGTCTTCAAAGGAAGGACGAAGCAAGCGAAGGAATGACGA
ATACGAAGAGAATGGTTCATATGATGAAGAAGATCGTTCCTCAGAGGAGG
AGGAGGCTAGTCGAAAGTCTAAGAAAAAGTCTTCAAAACGTGATGATTCT
GGGAATAGACCAACTGAAACTTGGGGTTTTGACCTCATGTCAGAATGGAT
GGGGGACGCCAAAGAAGAGAGCGTGCGACCGGCGAATCCTATCGCAAGCG
GAGCTAATGCAGGACAGAACATTCCCCAAGCTATGCAGCAAGCTTATCAG
ACTGCTCAAATACCGATGATGCCACCCATGTCGATGTATGGTAGTGTTAT
GCCAATGCCAGGAGGTGGGTTCATGCCAATGATGCCACCACCTGGCATGA
TGCCGCCGCCCATGGGAATGCCCGGTATGCCCGGTATGCCCGGTATGCCC
GGAATGCCTCCAATACCACCCGGAATGATGGGTGGCATACCGCCAATGCC
AAACGCTCCCAACATGCCTCAAGGTGGTGGGATGTCAGGTGTTCCAGGCC
TAATTAACGGAATGCACAACTTGAACATGAATACCAGACCACACCCAGTC
GGACCTGCCACAACCCAACCTCCTCCTCCACCACCTGTGGGAATGCCAGC
GGGCCCCCCGCCTGGTCCTCCTCCGGACCCTCCAGCGAAGTCGTAG
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