Gchil7809.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7809.t1
Unique Name	Gchil7809.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	618

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004401_pilon	contig	tig00004401_pilon:120270..122123 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7809	Gchil7809	Gracilaria chilensis NLEC103_M9 male	gene	tig00004401_pilon 120270..122123 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7809.t1.start1	Gchil7809.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004401_pilon 120270..120272 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7809.t1.CDS1	Gchil7809.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004401_pilon 120270..122123 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7809.t1.exon1	Gchil7809.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004401_pilon 120270..122123 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7809.t1.stop1	Gchil7809.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004401_pilon 122121..122123 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7809.t1	Gchil7809.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004401_pilon 120270..122123 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004401_pilon:120270..122123+
coding sequence from alignment at tig00004401_pilon:120270..122123+

mRNA sequence

>Gchil7809.t1 ID=Gchil7809.t1|Name=Gchil7809.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=618bp
MATSSSSIVSHELNAEEIENSQAFPPIELRTAGYKVLTEEEARREITIAN
NWNEEGRDHLPLTREVLSDTLDTLIDLRNRDRSEMRETEDGDRNHVQWEC
RILECDSFSRHISESSADVNATALEFLSHLATARHIDRMRFVGYRDLLYF
GGSLVYDYENGMLFPEERALSRVVQYTMDTPSAESALYNTGSRFGRTLWR
SVHVSCDRDLQEEGAVPRICVYSITDFISTVYAAMVELFEADYEDEEEKG
RFFQDAKFHWLSFASLFGDREKEVSNDLGLVIVDLQKAFMYDGEMRQFIV
EVYVAIVYLYAIADEIARSSVQDHVDFQATLRNALKYNKALFLIKESGIT
MELFFHTNYKGNLNREQREMFYEEIRAVFENDEYGGMQVSDALPIPATAA
PGMPNYEALSVEVTVCGVRVRPGCARLPATSQAVILWSGADRRSNLCFMA
KRVGNTTDINISKSIAPTASPNPLVQIDENELTFDNNGQARGREVAEEVM
RAFLSGACGPKRAWWMITRLACGEIRISQRSEAAYARFFGTLADEEAPAV
NTPLAKDIRKRLPVLVDEQEQKAYLVLGKNIDPIRVQAEDGRLMLLEQNA
DVPGRCRVGTLADDLEF*

spliced messenger RNA

>Gchil7809.t1 ID=Gchil7809.t1|Name=Gchil7809.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1854bp|location=Sequence derived from alignment at tig00004401_pilon:120270..122123+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACCTCGAGCAGCTCCATTGTGTCTCATGAACTGAACGCTGAGGA
AATCGAGAATTCCCAAGCATTCCCGCCTATCGAGCTACGTACCGCAGGCT
ATAAGGTTCTGACTGAAGAGGAAGCGCGCCGCGAAATTACCATCGCAAAC
AACTGGAATGAAGAAGGCAGAGATCACCTCCCACTAACGAGGGAAGTTCT
CTCCGACACCCTAGATACCCTCATTGACCTCCGCAACAGAGATCGGAGTG
AGATGCGTGAAACCGAAGACGGCGATCGTAATCATGTTCAGTGGGAATGC
CGCATCCTTGAATGCGACTCCTTTTCTCGTCATATTTCGGAGTCAAGCGC
AGATGTCAATGCCACTGCGCTCGAGTTTCTTTCTCACCTAGCGACTGCTA
GGCATATCGACCGTATGAGATTCGTTGGTTACCGAGATCTTTTGTATTTT
GGCGGTAGCCTTGTGTACGATTATGAAAACGGAATGCTCTTTCCGGAAGA
AAGGGCCCTTTCCCGCGTCGTTCAGTACACAATGGACACACCTTCGGCGG
AGTCTGCACTATATAATACAGGATCTCGTTTTGGGAGAACACTGTGGAGA
TCAGTGCACGTTTCATGCGACCGTGATTTACAAGAAGAAGGTGCCGTTCC
TAGAATATGTGTGTACTCAATCACTGATTTTATCAGCACTGTCTACGCAG
CAATGGTGGAGCTGTTCGAAGCGGATTATGAGGACGAGGAGGAGAAGGGA
CGATTTTTTCAGGACGCGAAGTTCCATTGGCTCAGTTTTGCTAGTCTCTT
CGGCGACAGAGAGAAGGAGGTTTCCAACGATCTCGGGCTGGTTATTGTAG
ACCTGCAGAAGGCTTTCATGTACGACGGAGAAATGAGACAGTTTATTGTT
GAAGTGTACGTTGCAATTGTGTACTTGTACGCCATTGCTGACGAGATAGC
TCGAAGCTCTGTGCAGGATCATGTCGACTTTCAAGCGACCTTGCGCAACG
CTCTCAAGTACAACAAAGCTTTGTTCCTTATCAAAGAAAGCGGCATCACA
ATGGAGCTCTTCTTCCATACAAACTATAAGGGCAATCTGAATCGAGAACA
ACGTGAAATGTTTTACGAAGAGATTCGCGCTGTGTTTGAGAATGATGAAT
ACGGAGGCATGCAAGTCAGCGATGCCTTGCCAATCCCAGCAACAGCGGCT
CCGGGCATGCCAAACTACGAAGCGTTGAGCGTTGAGGTAACCGTTTGCGG
GGTGCGGGTGCGCCCCGGCTGTGCTCGGCTACCAGCAACATCTCAGGCCG
TGATACTCTGGTCAGGTGCTGATCGAAGAAGCAACTTGTGCTTCATGGCA
AAGCGGGTAGGCAACACAACGGATATTAATATTTCCAAGTCGATAGCTCC
TACGGCTTCACCGAATCCTCTTGTACAGATAGACGAGAACGAATTAACAT
TTGACAACAACGGACAAGCCCGGGGACGTGAAGTTGCTGAGGAGGTTATG
CGTGCTTTTCTGAGCGGAGCTTGCGGCCCGAAGAGGGCGTGGTGGATGAT
TACTCGTCTTGCTTGTGGTGAGATACGCATCTCGCAGCGATCGGAGGCAG
CATATGCGCGATTCTTTGGCACGCTTGCAGACGAAGAAGCGCCGGCTGTG
AACACACCACTTGCTAAAGATATTAGGAAACGACTGCCTGTGCTTGTTGA
TGAACAGGAACAGAAAGCGTACCTGGTGCTTGGGAAGAATATTGACCCGA
TTAGGGTGCAAGCAGAAGATGGACGGCTTATGCTGTTGGAACAGAACGCT
GATGTGCCCGGTAGATGTCGAGTTGGCACGCTAGCGGACGATCTGGAATT
TTAG

protein sequence of Gchil7809.t1

>Gchil7809.t1 ID=Gchil7809.t1|Name=Gchil7809.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=618bp
MATSSSSIVSHELNAEEIENSQAFPPIELRTAGYKVLTEEEARREITIAN
NWNEEGRDHLPLTREVLSDTLDTLIDLRNRDRSEMRETEDGDRNHVQWEC
RILECDSFSRHISESSADVNATALEFLSHLATARHIDRMRFVGYRDLLYF
GGSLVYDYENGMLFPEERALSRVVQYTMDTPSAESALYNTGSRFGRTLWR
SVHVSCDRDLQEEGAVPRICVYSITDFISTVYAAMVELFEADYEDEEEKG
RFFQDAKFHWLSFASLFGDREKEVSNDLGLVIVDLQKAFMYDGEMRQFIV
EVYVAIVYLYAIADEIARSSVQDHVDFQATLRNALKYNKALFLIKESGIT
MELFFHTNYKGNLNREQREMFYEEIRAVFENDEYGGMQVSDALPIPATAA
PGMPNYEALSVEVTVCGVRVRPGCARLPATSQAVILWSGADRRSNLCFMA
KRVGNTTDINISKSIAPTASPNPLVQIDENELTFDNNGQARGREVAEEVM
RAFLSGACGPKRAWWMITRLACGEIRISQRSEAAYARFFGTLADEEAPAV
NTPLAKDIRKRLPVLVDEQEQKAYLVLGKNIDPIRVQAEDGRLMLLEQNA
DVPGRCRVGTLADDLEF*

mRNA from alignment at tig00004401_pilon:120270..122123+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7809.t1 ID=Gchil7809.t1|Name=Gchil7809.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1854bp|location=Sequence derived from alignment at tig00004401_pilon:120270..122123+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACCTCGAGCAGCTCCATTGTGTCTCATGAACTGAACGCTGAGGA
AATCGAGAATTCCCAAGCATTCCCGCCTATCGAGCTACGTACCGCAGGCT
ATAAGGTTCTGACTGAAGAGGAAGCGCGCCGCGAAATTACCATCGCAAAC
AACTGGAATGAAGAAGGCAGAGATCACCTCCCACTAACGAGGGAAGTTCT
CTCCGACACCCTAGATACCCTCATTGACCTCCGCAACAGAGATCGGAGTG
AGATGCGTGAAACCGAAGACGGCGATCGTAATCATGTTCAGTGGGAATGC
CGCATCCTTGAATGCGACTCCTTTTCTCGTCATATTTCGGAGTCAAGCGC
AGATGTCAATGCCACTGCGCTCGAGTTTCTTTCTCACCTAGCGACTGCTA
GGCATATCGACCGTATGAGATTCGTTGGTTACCGAGATCTTTTGTATTTT
GGCGGTAGCCTTGTGTACGATTATGAAAACGGAATGCTCTTTCCGGAAGA
AAGGGCCCTTTCCCGCGTCGTTCAGTACACAATGGACACACCTTCGGCGG
AGTCTGCACTATATAATACAGGATCTCGTTTTGGGAGAACACTGTGGAGA
TCAGTGCACGTTTCATGCGACCGTGATTTACAAGAAGAAGGTGCCGTTCC
TAGAATATGTGTGTACTCAATCACTGATTTTATCAGCACTGTCTACGCAG
CAATGGTGGAGCTGTTCGAAGCGGATTATGAGGACGAGGAGGAGAAGGGA
CGATTTTTTCAGGACGCGAAGTTCCATTGGCTCAGTTTTGCTAGTCTCTT
CGGCGACAGAGAGAAGGAGGTTTCCAACGATCTCGGGCTGGTTATTGTAG
ACCTGCAGAAGGCTTTCATGTACGACGGAGAAATGAGACAGTTTATTGTT
GAAGTGTACGTTGCAATTGTGTACTTGTACGCCATTGCTGACGAGATAGC
TCGAAGCTCTGTGCAGGATCATGTCGACTTTCAAGCGACCTTGCGCAACG
CTCTCAAGTACAACAAAGCTTTGTTCCTTATCAAAGAAAGCGGCATCACA
ATGGAGCTCTTCTTCCATACAAACTATAAGGGCAATCTGAATCGAGAACA
ACGTGAAATGTTTTACGAAGAGATTCGCGCTGTGTTTGAGAATGATGAAT
ACGGAGGCATGCAAGTCAGCGATGCCTTGCCAATCCCAGCAACAGCGGCT
CCGGGCATGCCAAACTACGAAGCGTTGAGCGTTGAGGTAACCGTTTGCGG
GGTGCGGGTGCGCCCCGGCTGTGCTCGGCTACCAGCAACATCTCAGGCCG
TGATACTCTGGTCAGGTGCTGATCGAAGAAGCAACTTGTGCTTCATGGCA
AAGCGGGTAGGCAACACAACGGATATTAATATTTCCAAGTCGATAGCTCC
TACGGCTTCACCGAATCCTCTTGTACAGATAGACGAGAACGAATTAACAT
TTGACAACAACGGACAAGCCCGGGGACGTGAAGTTGCTGAGGAGGTTATG
CGTGCTTTTCTGAGCGGAGCTTGCGGCCCGAAGAGGGCGTGGTGGATGAT
TACTCGTCTTGCTTGTGGTGAGATACGCATCTCGCAGCGATCGGAGGCAG
CATATGCGCGATTCTTTGGCACGCTTGCAGACGAAGAAGCGCCGGCTGTG
AACACACCACTTGCTAAAGATATTAGGAAACGACTGCCTGTGCTTGTTGA
TGAACAGGAACAGAAAGCGTACCTGGTGCTTGGGAAGAATATTGACCCGA
TTAGGGTGCAAGCAGAAGATGGACGGCTTATGCTGTTGGAACAGAACGCT
GATGTGCCCGGTAGATGTCGAGTTGGCACGCTAGCGGACGATCTGGAATT
TTAG

Coding sequence (CDS) from alignment at tig00004401_pilon:120270..122123+

>Gchil7809.t1 ID=Gchil7809.t1|Name=Gchil7809.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1854bp|location=Sequence derived from alignment at tig00004401_pilon:120270..122123+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACCTCGAGCAGCTCCATTGTGTCTCATGAACTGAACGCTGAGGA
AATCGAGAATTCCCAAGCATTCCCGCCTATCGAGCTACGTACCGCAGGCT
ATAAGGTTCTGACTGAAGAGGAAGCGCGCCGCGAAATTACCATCGCAAAC
AACTGGAATGAAGAAGGCAGAGATCACCTCCCACTAACGAGGGAAGTTCT
CTCCGACACCCTAGATACCCTCATTGACCTCCGCAACAGAGATCGGAGTG
AGATGCGTGAAACCGAAGACGGCGATCGTAATCATGTTCAGTGGGAATGC
CGCATCCTTGAATGCGACTCCTTTTCTCGTCATATTTCGGAGTCAAGCGC
AGATGTCAATGCCACTGCGCTCGAGTTTCTTTCTCACCTAGCGACTGCTA
GGCATATCGACCGTATGAGATTCGTTGGTTACCGAGATCTTTTGTATTTT
GGCGGTAGCCTTGTGTACGATTATGAAAACGGAATGCTCTTTCCGGAAGA
AAGGGCCCTTTCCCGCGTCGTTCAGTACACAATGGACACACCTTCGGCGG
AGTCTGCACTATATAATACAGGATCTCGTTTTGGGAGAACACTGTGGAGA
TCAGTGCACGTTTCATGCGACCGTGATTTACAAGAAGAAGGTGCCGTTCC
TAGAATATGTGTGTACTCAATCACTGATTTTATCAGCACTGTCTACGCAG
CAATGGTGGAGCTGTTCGAAGCGGATTATGAGGACGAGGAGGAGAAGGGA
CGATTTTTTCAGGACGCGAAGTTCCATTGGCTCAGTTTTGCTAGTCTCTT
CGGCGACAGAGAGAAGGAGGTTTCCAACGATCTCGGGCTGGTTATTGTAG
ACCTGCAGAAGGCTTTCATGTACGACGGAGAAATGAGACAGTTTATTGTT
GAAGTGTACGTTGCAATTGTGTACTTGTACGCCATTGCTGACGAGATAGC
TCGAAGCTCTGTGCAGGATCATGTCGACTTTCAAGCGACCTTGCGCAACG
CTCTCAAGTACAACAAAGCTTTGTTCCTTATCAAAGAAAGCGGCATCACA
ATGGAGCTCTTCTTCCATACAAACTATAAGGGCAATCTGAATCGAGAACA
ACGTGAAATGTTTTACGAAGAGATTCGCGCTGTGTTTGAGAATGATGAAT
ACGGAGGCATGCAAGTCAGCGATGCCTTGCCAATCCCAGCAACAGCGGCT
CCGGGCATGCCAAACTACGAAGCGTTGAGCGTTGAGGTAACCGTTTGCGG
GGTGCGGGTGCGCCCCGGCTGTGCTCGGCTACCAGCAACATCTCAGGCCG
TGATACTCTGGTCAGGTGCTGATCGAAGAAGCAACTTGTGCTTCATGGCA
AAGCGGGTAGGCAACACAACGGATATTAATATTTCCAAGTCGATAGCTCC
TACGGCTTCACCGAATCCTCTTGTACAGATAGACGAGAACGAATTAACAT
TTGACAACAACGGACAAGCCCGGGGACGTGAAGTTGCTGAGGAGGTTATG
CGTGCTTTTCTGAGCGGAGCTTGCGGCCCGAAGAGGGCGTGGTGGATGAT
TACTCGTCTTGCTTGTGGTGAGATACGCATCTCGCAGCGATCGGAGGCAG
CATATGCGCGATTCTTTGGCACGCTTGCAGACGAAGAAGCGCCGGCTGTG
AACACACCACTTGCTAAAGATATTAGGAAACGACTGCCTGTGCTTGTTGA
TGAACAGGAACAGAAAGCGTACCTGGTGCTTGGGAAGAATATTGACCCGA
TTAGGGTGCAAGCAGAAGATGGACGGCTTATGCTGTTGGAACAGAACGCT
GATGTGCCCGGTAGATGTCGAGTTGGCACGCTAGCGGACGATCTGGAATT
TTAG