Gchil7810.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7810.t1
Unique NameGchil7810.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length657
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004401_piloncontigtig00004401_pilon:213171..215506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3880.AES83116
PFAMsWD40
Max annot lvl33090|Viridiplantae
KEGG koko:K14963,ko:K16482
KEGG Pathwayko04934,map04934
Evalue9.67e-09
EggNOG OGsKOG0266@1|root,KOG4658@1|root,KOG0266@2759|Eukaryota,KOG4658@2759|Eukaryota,37P7V@33090|Viridiplantae,3GA8I@35493|Streptophyta
DescriptionWD repeat-containing protein
COG categoryS
BRITEko00000,ko00001,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7810Gchil7810Gracilaria chilensis NLEC103_M9 malegenetig00004401_pilon 213171..215506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7810.t1Gchil7810.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004401_pilon 213171..215506 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7810.t1.start1Gchil7810.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004401_pilon 213171..213173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7810.t1.CDS1Gchil7810.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004401_pilon 213171..213580 +
Gchil7810.t1.CDS2Gchil7810.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004401_pilon 213833..215303 +
Gchil7810.t1.CDS3Gchil7810.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004401_pilon 215417..215506 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7810.t1.exon1Gchil7810.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004401_pilon 213171..213580 +
Gchil7810.t1.exon2Gchil7810.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004401_pilon 213833..215303 +
Gchil7810.t1.exon3Gchil7810.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004401_pilon 215417..215506 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7810.t1.intron1Gchil7810.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004401_pilon 213581..213832 +
Gchil7810.t1.intron2Gchil7810.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004401_pilon 215304..215416 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7810.t1.stop1Gchil7810.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004401_pilon 215504..215506 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7810.t1 ID=Gchil7810.t1|Name=Gchil7810.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=657bp
MDPPGFQDLFAVLQKLETTVNRYFERKDIAQDNKTKLRRLRNQYRRANYL
IRQLEGLSTPDFVTLERLSLYFDDLQQNSVELNDLQSGIDKATVRNRVRR
MEKVLKQCETDVKELFQFLTDNVSPTLRDAQNSGQDRPATIIQGIARIVE
RTNGSRLAEQVRASKTPLEASDKASTWFRPHNCLFLVDDIWWLNGIDSSV
FTLLGTMVNEGSRLVYTTRDRLFLGETDKPIEFSEKEAHGELARRMLMRH
AGFGAEHRLDGVNKNAFESILHICQGLPLALGIAGGSVWKYSLEQHADQK
QNAWSDFHRDLLAKRKDLLDIPAAGYGALTNIVDVSLEVLETWSERRNFQ
KLFRALCVVQKQQCVPFNMLKNLWGLESLAEVEDVVEMMNDVSVLQVRRE
SGFKNVQLHDLILDIAVLKASEEHEAQMFFRILIHNYIRSETTEDGYWLR
AAWWNTGDDGYFHNNLCRALRNAGYVDELLWLLSKPQWIVMRLQDGGISF
VEQDLKQGTDVAGTGSTELSDERKHLEIIGKAARMSWVYVNNNPYEAWFQ
MHGRLLWYATQCEKTRKFVEEIERSAPKPWAKASVGFLQPAGGAMLDTIP
SLGGIVGLSYGGDEIVVLEQYMEGMAVENCGRTRERKRCRVEYRNGCDDV
YPRTSM*
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spliced messenger RNA

>Gchil7810.t1 ID=Gchil7810.t1|Name=Gchil7810.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1971bp|location=Sequence derived from alignment at tig00004401_pilon:213171..215506+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCCTCCGGGGTTTCAGGACCTGTTTGCGGTGCTTCAAAAGCTCGA
GACCACTGTGAACAGGTACTTCGAACGCAAGGATATTGCCCAAGATAACA
AGACGAAGCTTCGCCGACTGCGAAATCAGTACAGGCGTGCGAATTATTTG
ATTCGACAGCTTGAAGGCTTGTCAACCCCAGACTTCGTAACACTCGAAAG
GTTGTCGCTTTATTTTGACGATTTGCAACAAAACTCCGTCGAACTCAACG
ACTTGCAGTCAGGTATCGACAAAGCTACGGTGCGAAATCGAGTCCGCCGA
ATGGAAAAAGTATTGAAGCAGTGCGAGACGGATGTGAAAGAGTTGTTCCA
ATTCCTAACTGACAATGTCTCTCCGACGCTTAGAGATGCACAGAACTCGG
GCCAAGatagGCCAGCGACGATCATACAGGGTATCGCAAGGATTGTGGAA
CGGACAAACGGTTCACGGCTGGCGGAACAGGTAAGAGCTTCCAAAACGCC
GCTAGAGGCATCGGACAAGGCCTCTACATGGTTCAGACCTCATAACTGTC
TGTTTCTTGTAGATGACATATGGTGGCTGAACGGCATTGATTCCAGTGTG
TTCACCCTACTTGGCACAATGGTGAACGAAGGCAGTCGACTGGTGTACAC
CACGAGAGACAGGCTTTTTCTGGGAGAAACTGATAAGCCGATTGAGTTTT
CAGAGAAGGAAGCCCATGGCGAGTTAGCCAGACGTATGCTGATGAGGCAT
GCTGGTTTTGGTGCAGAGCACAGGCTTGACGGCGTGAACAAGAATGCCTT
CGAATCTATTCTTCACATATGCCAGGGGCTCCCACTTGCACTTGGCATTG
CGGGAGGCTCAGTATGGAAGTATTCTCTTGAGCAGCATGCAGATCAAAAG
CAGAATGCATGGTCCGATTTTCATCGAGATCTGTTGGCGAAGCGAAAAGA
CTTGCTGGACATCCCTGCGGCGGGATACGGCGCTCTTACGAACATTGTGG
ATGTTTCCCTTGAAGTGCTGGAGACGTGGAGTGAACGCAGGAACTTCCAG
AAGCTGTTTCGGGCCTTGTGTGTTGTTCAAAAACAACAGTGTGTTCCGTT
CAACATGCTGAAGAACCTGTGGGGCTTGGAGAGCTTGGCTGAAGTAGAGG
ATGTTGTAGAAATGATGAATGATGTCTCAGTCTTACAAGTGAGGAGGGAA
AGTGGTTTTAAAAATGTTCAGCTACACGACTTGATCTTAGACATTGCTGT
TCTAAAGGCATCAGAAGAGCACGAAGCTCAAATGTTCTTTCGAATTTTAA
TTCACAACTACATTCGATCTGAGACTACTGAAGACGGGTACTGGTTGCGA
GCagcgtggtggaatactggcgatgacggttattttcacaacaatctttg
cagagcacttcgcaatgcaggatacgttgatgaattgctatggcttctgt
caaagccgcaatggatcgtgATGCGTCTGCAAGACGGCGGGATTTCGTTC
GTAGAGCAAGACCTCAAACAAGGAACAGATGTCGCCGGCACGGGCAGTAC
CGAGCTCTCGGATGAAAGAAAGCATCTGGAAATCATTGGAAAGGCTGCCC
GCATGAGTTGGGTGTATGTTAACAACAATCCGTATGAAGCGTGGTTTCAG
ATGCACGGTCGATTGTTGTGGTATGCGACGCAGTGTGAAAAGACTCGAAA
GTTTGTCGAGGAGATAGAGCGTAGTGCACCGAAACCGTGGGCTAAAGCTT
CTGTGGGGTTTTTGCAACCAGCGGGTGGTGCAATGCTGGATACGATTCCG
AGCCTTGGAGGAATTGTTGGCTTGAGTTATGGCGGCGACGAAATTGTCGT
TTTGGAGCAGTATATGGAGGGTATGGCGGTTGAGAATTGCGGCAGGACAC
GAGAACGGAAACGTTGTCGTGTGGAATACCGAAACGGGTGCGATGATGTG
TATCCTCGGACATCAATGTGA
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protein sequence of Gchil7810.t1

>Gchil7810.t1 ID=Gchil7810.t1|Name=Gchil7810.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=657bp
MDPPGFQDLFAVLQKLETTVNRYFERKDIAQDNKTKLRRLRNQYRRANYL
IRQLEGLSTPDFVTLERLSLYFDDLQQNSVELNDLQSGIDKATVRNRVRR
MEKVLKQCETDVKELFQFLTDNVSPTLRDAQNSGQDRPATIIQGIARIVE
RTNGSRLAEQVRASKTPLEASDKASTWFRPHNCLFLVDDIWWLNGIDSSV
FTLLGTMVNEGSRLVYTTRDRLFLGETDKPIEFSEKEAHGELARRMLMRH
AGFGAEHRLDGVNKNAFESILHICQGLPLALGIAGGSVWKYSLEQHADQK
QNAWSDFHRDLLAKRKDLLDIPAAGYGALTNIVDVSLEVLETWSERRNFQ
KLFRALCVVQKQQCVPFNMLKNLWGLESLAEVEDVVEMMNDVSVLQVRRE
SGFKNVQLHDLILDIAVLKASEEHEAQMFFRILIHNYIRSETTEDGYWLR
AAWWNTGDDGYFHNNLCRALRNAGYVDELLWLLSKPQWIVMRLQDGGISF
VEQDLKQGTDVAGTGSTELSDERKHLEIIGKAARMSWVYVNNNPYEAWFQ
MHGRLLWYATQCEKTRKFVEEIERSAPKPWAKASVGFLQPAGGAMLDTIP
SLGGIVGLSYGGDEIVVLEQYMEGMAVENCGRTRERKRCRVEYRNGCDDV
YPRTSM*
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mRNA from alignment at tig00004401_pilon:213171..215506+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7810.t1 ID=Gchil7810.t1|Name=Gchil7810.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2336bp|location=Sequence derived from alignment at tig00004401_pilon:213171..215506+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCCTCCGGGGTTTCAGGACCTGTTTGCGGTGCTTCAAAAGCTCGA
GACCACTGTGAACAGGTACTTCGAACGCAAGGATATTGCCCAAGATAACA
AGACGAAGCTTCGCCGACTGCGAAATCAGTACAGGCGTGCGAATTATTTG
ATTCGACAGCTTGAAGGCTTGTCAACCCCAGACTTCGTAACACTCGAAAG
GTTGTCGCTTTATTTTGACGATTTGCAACAAAACTCCGTCGAACTCAACG
ACTTGCAGTCAGGTATCGACAAAGCTACGGTGCGAAATCGAGTCCGCCGA
ATGGAAAAAGTATTGAAGCAGTGCGAGACGGATGTGAAAGAGTTGTTCCA
ATTCCTAACTGACAATGTCTCTCCGACGCTTAGAGATGCACAGAACTCGG
GCCAAGataggtactcaccggataacaacgtgccacccaacccaccccga
ctgactctggactacagcactaccaccacatgcgagggaagactgaaaaa
cgcaattctggacaagtccgagaatcgcattgttgctgttctcgccaccg
ggagaggtggcgttggcaaaacatgcgccctgcgaggccttgcgtccgac
aaagaagtgaaggaacgatttcctggtggtacTCTTTACATTCAGCTTGG
CAAGGATGCCAGGCCAGCGACGATCATACAGGGTATCGCAAGGATTGTGG
AACGGACAAACGGTTCACGGCTGGCGGAACAGGTAAGAGCTTCCAAAACG
CCGCTAGAGGCATCGGACAAGGCCTCTACATGGTTCAGACCTCATAACTG
TCTGTTTCTTGTAGATGACATATGGTGGCTGAACGGCATTGATTCCAGTG
TGTTCACCCTACTTGGCACAATGGTGAACGAAGGCAGTCGACTGGTGTAC
ACCACGAGAGACAGGCTTTTTCTGGGAGAAACTGATAAGCCGATTGAGTT
TTCAGAGAAGGAAGCCCATGGCGAGTTAGCCAGACGTATGCTGATGAGGC
ATGCTGGTTTTGGTGCAGAGCACAGGCTTGACGGCGTGAACAAGAATGCC
TTCGAATCTATTCTTCACATATGCCAGGGGCTCCCACTTGCACTTGGCAT
TGCGGGAGGCTCAGTATGGAAGTATTCTCTTGAGCAGCATGCAGATCAAA
AGCAGAATGCATGGTCCGATTTTCATCGAGATCTGTTGGCGAAGCGAAAA
GACTTGCTGGACATCCCTGCGGCGGGATACGGCGCTCTTACGAACATTGT
GGATGTTTCCCTTGAAGTGCTGGAGACGTGGAGTGAACGCAGGAACTTCC
AGAAGCTGTTTCGGGCCTTGTGTGTTGTTCAAAAACAACAGTGTGTTCCG
TTCAACATGCTGAAGAACCTGTGGGGCTTGGAGAGCTTGGCTGAAGTAGA
GGATGTTGTAGAAATGATGAATGATGTCTCAGTCTTACAAGTGAGGAGGG
AAAGTGGTTTTAAAAATGTTCAGCTACACGACTTGATCTTAGACATTGCT
GTTCTAAAGGCATCAGAAGAGCACGAAGCTCAAATGTTCTTTCGAATTTT
AATTCACAACTACATTCGATCTGAGACTACTGAAGACGGGTACTGGTTGC
GAGCagcgtggtggaatactggcgatgacggttattttcacaacaatctt
tgcagagcacttcgcaatgcaggatacgttgatgaattgctatggcttct
gtcaaagccgcaatggatcgtgATGCGTCTGCAAGACGGCGGGATTTCGT
TCGTAGAGCAAGACCTCAAACAAGGAACAGATGTCGCCGGCACGGGCAGT
ACCGAGCTCTCGGATGAAAGAAAGCATCTGGAAATCATTGGAAAGGCTGC
CCGCATGAGTTGGGTGTATGTTAACAACAATCCGTATGAAGCGTGGTTTC
AGATGCACGGTCGATTGTTGTGGTATGCGACGCAGTGTGAAAAGACTCGA
AAGTTTGTCGAGGAGATAGAGCGTAGTGCACCGAAACCGTGGGCTAAAGC
TTCTGTGGGGTTTTTGCAACCAGCGGGTGGTGCAATGCTGGATACGATTC
CGAGCCTTGGAGGAATTGTTGGCTTGAGTTATGGCGGCGACGAAATTGTC
GTTTTGGAGCAGTATATGGAGGGTATGGCGGTTGTGAGGTATAACCTTAC
GAGTGGCACTCGCAAAAGGCAGGACTTCAGCGTCGAAAGAGACAGTCTGG
ACTGGACCTTAGGATCCATCTGTTGTGCCTTTTCACCCGACCGAAGGAGA
ATTGCGGCAGGACACGAGAACGGAAACGTTGTCGTGTGGAATACCGAAAC
GGGTGCGATGATGTGTATCCTCGGACATCAATGTGA
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Coding sequence (CDS) from alignment at tig00004401_pilon:213171..215506+

>Gchil7810.t1 ID=Gchil7810.t1|Name=Gchil7810.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1971bp|location=Sequence derived from alignment at tig00004401_pilon:213171..215506+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCCTCCGGGGTTTCAGGACCTGTTTGCGGTGCTTCAAAAGCTCGA
GACCACTGTGAACAGGTACTTCGAACGCAAGGATATTGCCCAAGATAACA
AGACGAAGCTTCGCCGACTGCGAAATCAGTACAGGCGTGCGAATTATTTG
ATTCGACAGCTTGAAGGCTTGTCAACCCCAGACTTCGTAACACTCGAAAG
GTTGTCGCTTTATTTTGACGATTTGCAACAAAACTCCGTCGAACTCAACG
ACTTGCAGTCAGGTATCGACAAAGCTACGGTGCGAAATCGAGTCCGCCGA
ATGGAAAAAGTATTGAAGCAGTGCGAGACGGATGTGAAAGAGTTGTTCCA
ATTCCTAACTGACAATGTCTCTCCGACGCTTAGAGATGCACAGAACTCGG
GCCAAGatagGCCAGCGACGATCATACAGGGTATCGCAAGGATTGTGGAA
CGGACAAACGGTTCACGGCTGGCGGAACAGGTAAGAGCTTCCAAAACGCC
GCTAGAGGCATCGGACAAGGCCTCTACATGGTTCAGACCTCATAACTGTC
TGTTTCTTGTAGATGACATATGGTGGCTGAACGGCATTGATTCCAGTGTG
TTCACCCTACTTGGCACAATGGTGAACGAAGGCAGTCGACTGGTGTACAC
CACGAGAGACAGGCTTTTTCTGGGAGAAACTGATAAGCCGATTGAGTTTT
CAGAGAAGGAAGCCCATGGCGAGTTAGCCAGACGTATGCTGATGAGGCAT
GCTGGTTTTGGTGCAGAGCACAGGCTTGACGGCGTGAACAAGAATGCCTT
CGAATCTATTCTTCACATATGCCAGGGGCTCCCACTTGCACTTGGCATTG
CGGGAGGCTCAGTATGGAAGTATTCTCTTGAGCAGCATGCAGATCAAAAG
CAGAATGCATGGTCCGATTTTCATCGAGATCTGTTGGCGAAGCGAAAAGA
CTTGCTGGACATCCCTGCGGCGGGATACGGCGCTCTTACGAACATTGTGG
ATGTTTCCCTTGAAGTGCTGGAGACGTGGAGTGAACGCAGGAACTTCCAG
AAGCTGTTTCGGGCCTTGTGTGTTGTTCAAAAACAACAGTGTGTTCCGTT
CAACATGCTGAAGAACCTGTGGGGCTTGGAGAGCTTGGCTGAAGTAGAGG
ATGTTGTAGAAATGATGAATGATGTCTCAGTCTTACAAGTGAGGAGGGAA
AGTGGTTTTAAAAATGTTCAGCTACACGACTTGATCTTAGACATTGCTGT
TCTAAAGGCATCAGAAGAGCACGAAGCTCAAATGTTCTTTCGAATTTTAA
TTCACAACTACATTCGATCTGAGACTACTGAAGACGGGTACTGGTTGCGA
GCagcgtggtggaatactggcgatgacggttattttcacaacaatctttg
cagagcacttcgcaatgcaggatacgttgatgaattgctatggcttctgt
caaagccgcaatggatcgtgATGCGTCTGCAAGACGGCGGGATTTCGTTC
GTAGAGCAAGACCTCAAACAAGGAACAGATGTCGCCGGCACGGGCAGTAC
CGAGCTCTCGGATGAAAGAAAGCATCTGGAAATCATTGGAAAGGCTGCCC
GCATGAGTTGGGTGTATGTTAACAACAATCCGTATGAAGCGTGGTTTCAG
ATGCACGGTCGATTGTTGTGGTATGCGACGCAGTGTGAAAAGACTCGAAA
GTTTGTCGAGGAGATAGAGCGTAGTGCACCGAAACCGTGGGCTAAAGCTT
CTGTGGGGTTTTTGCAACCAGCGGGTGGTGCAATGCTGGATACGATTCCG
AGCCTTGGAGGAATTGTTGGCTTGAGTTATGGCGGCGACGAAATTGTCGT
TTTGGAGCAGTATATGGAGGGTATGGCGGTTGAGAATTGCGGCAGGACAC
GAGAACGGAAACGTTGTCGTGTGGAATACCGAAACGGGTGCGATGATGTG
TATCCTCGGACATCAATGTGA
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