Gchil7812.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7812.t1
Unique NameGchil7812.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length412
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004401_piloncontigtig00004401_pilon:221877..223112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1496688.ER33_06910
PFAMsFAD_binding_3
Max annot lvl1117|Cyanobacteria
Evalue1.01e-88
EggNOG OGsCOG0654@1|root,COG0654@2|Bacteria,1GK63@1117|Cyanobacteria,22TCF@167375|Cyanobium
DescriptionFAD binding domain
COG categoryCH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7812Gchil7812Gracilaria chilensis NLEC103_M9 malegenetig00004401_pilon 221877..223112 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7812.t1.stop1Gchil7812.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004401_pilon 221877..221879 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7812.t1.CDS1Gchil7812.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004401_pilon 221877..223112 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7812.t1.exon1Gchil7812.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004401_pilon 221877..223112 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7812.t1.start1Gchil7812.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004401_pilon 223110..223112 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7812.t1Gchil7812.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004401_pilon 221877..223112 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7812.t1 ID=Gchil7812.t1|Name=Gchil7812.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=412bp
MAFVCVFTKLPSYRISHQRCKRLDRENRLRRQPSLSTPVVASLDIAVIGA
GTAGLTSALLLQRQGHNVTLFERAPMPRTEGCGVFIRGSAIDALENAGAT
DVAESLSQSGVPLSLFSYRDYNNNELSRQESDKQHKYISRTLRRSDVVDA
LWQPFKRAVHMSAAEFKGGKKLTNVVDVGDKVVAQFADGTTWSGDVLLGA
DGIRSQAAMFVAPQRKLGYLGDLVWRGISEDDALCVDGVSVVYPRKNGFY
ANCFDLGTDSDGRSFTHWGVFVESPYPENASERKAVKERGIPEEVLNTLP
TAYVNVVTQATNSNSANKTLVVGYYFDFDPLSTYVRGRVALLGDAAHSMA
STLSWGMASGIEDAVCLASKLEMESEVSSALRSYEEERLPVTHGYQNDSR
TLSRRLKKKPE*
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spliced messenger RNA

>Gchil7812.t1 ID=Gchil7812.t1|Name=Gchil7812.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00004401_pilon:221877..223112- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTCGTATGTGTATTCACGAAACTTCCATCGTACCGCATCAGCCA
TCAAAGGTGTAAGCGGCTTGACAGGGAGAACCGTCTCAGGCGGCAGCCGT
CTCTGTCAACACCTGTGGTTGCTTCTCTTGATATCGCCGTAATTGGTGCA
GGCACTGCTGGCCTCACCTCGGCTCTTCTTTTGCAGCGACAAGGCCATAA
TGTTACTCTCTTTGAACGCGCCCCAATGCCTCGCACAGAGGGCTGCGGGG
TGTTCATTAGAGGATCTGCAATAGATGCTTTGGAGAACGCGGGTGCCACA
GATGTCGCCGAAAGTCTTTCTCAATCAGGAGTTCCTCTGAGCCTCTTTTC
GTATCGGGACTATAACAACAACGAGCTTTCCAGACAAGAATCCGATAAAC
AGCACAAGTACATCTCAAGGACTTTAAGAAGATCAGATGTAGTAGACGCC
CTATGGCAGCCGTTTAAACGTGCAGTACATATGTCAGCAGCTGAGTTCAA
AGGCGGCAAGAAGTTGACAAATGTTGTTGATGTTGGTGACAAAGTCGTTG
CACAGTTTGCAGATGGTACGACTTGGAGCGGCGATGTCCTTCTTGGCGCA
GATGGCATAAGGTCCCAAGCTGCCATGTTCGTCGCACCACAAAGGAAGTT
AGGTTATCTGGGAGATCTTGTATGGCGTGGTATTTCTGAAGATGATGCAC
TTTGTGTCGATGGTGTTTCTGTCGTGTATCCCCGAAAGAACGGGTTTTAC
GCTAACTGCTTTGATCTTGGGACAGATAGTGATGGCAGGTCTTTTACTCA
CTGGGGAGTTTTTGTCGAATCACCATACCCAGAGAACGCAAGTGAGAGAA
AGGCTGTGAAAGAGAGAGGAATCCCAGAAGAGGTGTTGAACACACTACCG
ACAGCATATGTTAATGTTGTCACTCAAGCGACGAATTCGAACTCCGCGAA
TAAAACGCTGGTGGTAGGATATTACTTTGACTTCGATCCCTTGTCTACAT
ATGTGCGTGGCAGGGTGGCTTTGCTCGGCGATGCGGCTCATAGCATGGCT
TCGACCCTATCGTGGGGCATGGCGTCTGGGATTGAGGATGCGGTCTGTCT
GGCAAGCAAGTTGGAAATGGAAAGTGAAGTTTCCAGTGCTCTGAGGTCTT
ACGAAGAGGAAAGACTTCCAGTGACACATGGATATCAAAATGACAGCAGG
ACTTTGAGCCGACGTCTCAAGAAAAAACCCGAGTAG
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protein sequence of Gchil7812.t1

>Gchil7812.t1 ID=Gchil7812.t1|Name=Gchil7812.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=412bp
MAFVCVFTKLPSYRISHQRCKRLDRENRLRRQPSLSTPVVASLDIAVIGA
GTAGLTSALLLQRQGHNVTLFERAPMPRTEGCGVFIRGSAIDALENAGAT
DVAESLSQSGVPLSLFSYRDYNNNELSRQESDKQHKYISRTLRRSDVVDA
LWQPFKRAVHMSAAEFKGGKKLTNVVDVGDKVVAQFADGTTWSGDVLLGA
DGIRSQAAMFVAPQRKLGYLGDLVWRGISEDDALCVDGVSVVYPRKNGFY
ANCFDLGTDSDGRSFTHWGVFVESPYPENASERKAVKERGIPEEVLNTLP
TAYVNVVTQATNSNSANKTLVVGYYFDFDPLSTYVRGRVALLGDAAHSMA
STLSWGMASGIEDAVCLASKLEMESEVSSALRSYEEERLPVTHGYQNDSR
TLSRRLKKKPE*
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mRNA from alignment at tig00004401_pilon:221877..223112-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7812.t1 ID=Gchil7812.t1|Name=Gchil7812.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00004401_pilon:221877..223112- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTTCGTATGTGTATTCACGAAACTTCCATCGTACCGCATCAGCCA
TCAAAGGTGTAAGCGGCTTGACAGGGAGAACCGTCTCAGGCGGCAGCCGT
CTCTGTCAACACCTGTGGTTGCTTCTCTTGATATCGCCGTAATTGGTGCA
GGCACTGCTGGCCTCACCTCGGCTCTTCTTTTGCAGCGACAAGGCCATAA
TGTTACTCTCTTTGAACGCGCCCCAATGCCTCGCACAGAGGGCTGCGGGG
TGTTCATTAGAGGATCTGCAATAGATGCTTTGGAGAACGCGGGTGCCACA
GATGTCGCCGAAAGTCTTTCTCAATCAGGAGTTCCTCTGAGCCTCTTTTC
GTATCGGGACTATAACAACAACGAGCTTTCCAGACAAGAATCCGATAAAC
AGCACAAGTACATCTCAAGGACTTTAAGAAGATCAGATGTAGTAGACGCC
CTATGGCAGCCGTTTAAACGTGCAGTACATATGTCAGCAGCTGAGTTCAA
AGGCGGCAAGAAGTTGACAAATGTTGTTGATGTTGGTGACAAAGTCGTTG
CACAGTTTGCAGATGGTACGACTTGGAGCGGCGATGTCCTTCTTGGCGCA
GATGGCATAAGGTCCCAAGCTGCCATGTTCGTCGCACCACAAAGGAAGTT
AGGTTATCTGGGAGATCTTGTATGGCGTGGTATTTCTGAAGATGATGCAC
TTTGTGTCGATGGTGTTTCTGTCGTGTATCCCCGAAAGAACGGGTTTTAC
GCTAACTGCTTTGATCTTGGGACAGATAGTGATGGCAGGTCTTTTACTCA
CTGGGGAGTTTTTGTCGAATCACCATACCCAGAGAACGCAAGTGAGAGAA
AGGCTGTGAAAGAGAGAGGAATCCCAGAAGAGGTGTTGAACACACTACCG
ACAGCATATGTTAATGTTGTCACTCAAGCGACGAATTCGAACTCCGCGAA
TAAAACGCTGGTGGTAGGATATTACTTTGACTTCGATCCCTTGTCTACAT
ATGTGCGTGGCAGGGTGGCTTTGCTCGGCGATGCGGCTCATAGCATGGCT
TCGACCCTATCGTGGGGCATGGCGTCTGGGATTGAGGATGCGGTCTGTCT
GGCAAGCAAGTTGGAAATGGAAAGTGAAGTTTCCAGTGCTCTGAGGTCTT
ACGAAGAGGAAAGACTTCCAGTGACACATGGATATCAAAATGACAGCAGG
ACTTTGAGCCGACGTCTCAAGAAAAAACCCGAGTAG
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Coding sequence (CDS) from alignment at tig00004401_pilon:221877..223112-

>Gchil7812.t1 ID=Gchil7812.t1|Name=Gchil7812.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1236bp|location=Sequence derived from alignment at tig00004401_pilon:221877..223112- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTTCGTATGTGTATTCACGAAACTTCCATCGTACCGCATCAGCCA
TCAAAGGTGTAAGCGGCTTGACAGGGAGAACCGTCTCAGGCGGCAGCCGT
CTCTGTCAACACCTGTGGTTGCTTCTCTTGATATCGCCGTAATTGGTGCA
GGCACTGCTGGCCTCACCTCGGCTCTTCTTTTGCAGCGACAAGGCCATAA
TGTTACTCTCTTTGAACGCGCCCCAATGCCTCGCACAGAGGGCTGCGGGG
TGTTCATTAGAGGATCTGCAATAGATGCTTTGGAGAACGCGGGTGCCACA
GATGTCGCCGAAAGTCTTTCTCAATCAGGAGTTCCTCTGAGCCTCTTTTC
GTATCGGGACTATAACAACAACGAGCTTTCCAGACAAGAATCCGATAAAC
AGCACAAGTACATCTCAAGGACTTTAAGAAGATCAGATGTAGTAGACGCC
CTATGGCAGCCGTTTAAACGTGCAGTACATATGTCAGCAGCTGAGTTCAA
AGGCGGCAAGAAGTTGACAAATGTTGTTGATGTTGGTGACAAAGTCGTTG
CACAGTTTGCAGATGGTACGACTTGGAGCGGCGATGTCCTTCTTGGCGCA
GATGGCATAAGGTCCCAAGCTGCCATGTTCGTCGCACCACAAAGGAAGTT
AGGTTATCTGGGAGATCTTGTATGGCGTGGTATTTCTGAAGATGATGCAC
TTTGTGTCGATGGTGTTTCTGTCGTGTATCCCCGAAAGAACGGGTTTTAC
GCTAACTGCTTTGATCTTGGGACAGATAGTGATGGCAGGTCTTTTACTCA
CTGGGGAGTTTTTGTCGAATCACCATACCCAGAGAACGCAAGTGAGAGAA
AGGCTGTGAAAGAGAGAGGAATCCCAGAAGAGGTGTTGAACACACTACCG
ACAGCATATGTTAATGTTGTCACTCAAGCGACGAATTCGAACTCCGCGAA
TAAAACGCTGGTGGTAGGATATTACTTTGACTTCGATCCCTTGTCTACAT
ATGTGCGTGGCAGGGTGGCTTTGCTCGGCGATGCGGCTCATAGCATGGCT
TCGACCCTATCGTGGGGCATGGCGTCTGGGATTGAGGATGCGGTCTGTCT
GGCAAGCAAGTTGGAAATGGAAAGTGAAGTTTCCAGTGCTCTGAGGTCTT
ACGAAGAGGAAAGACTTCCAGTGACACATGGATATCAAAATGACAGCAGG
ACTTTGAGCCGACGTCTCAAGAAAAAACCCGAGTAG
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