Gchil2634.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2634.t1
Unique NameGchil2634.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length506
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:2077928..2079445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121921.KB898707_gene779
PFAMsBig_2,UnbV_ASPIC,VCBS
Max annot lvl1236|Gammaproteobacteria
Evalue8.31e-51
EggNOG OGsCOG2931@1|root,COG5492@1|root,COG2931@2|Bacteria,COG5492@2|Bacteria,1R7ZV@1224|Proteobacteria,1RPUG@1236|Gammaproteobacteria
DescriptionASPIC and UnbV
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2634Gchil2634Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 2077928..2079445 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2634.t1.stop1Gchil2634.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 2077928..2077930 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2634.t1.CDS1Gchil2634.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2077928..2079445 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2634.t1.exon1Gchil2634.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2077928..2079445 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2634.t1.start1Gchil2634.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 2079443..2079445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2634.t1Gchil2634.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 2077928..2079445 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2634.t1 ID=Gchil2634.t1|Name=Gchil2634.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=506bp
MNWSPLFFIFGAVVVHLSYVHAQPLAYFRDTTGASGLYDPRRLKKYGGPT
VVDLDRDGYPDLLFNHHDSVASQLFWNNRDGTFSQSTWKLWHDIHGINPF
PVSPWTKNMRFTLSVGGNYGRNPSSPYMYEVDAATRNVRLVTAEAGISLR
GGRGRTALYLDFSNRAHTLWPDVLFINAKALKGSNQYAYEQSKAGVFRLK
NIRGPFQFTEEQFGTVTDIDGDGIMEVLTYWTLRVWKITRPFTLKEITKN
VLPSETPYRGVAAIAEIDFDNDGDFDLYIARSRIGWWMPQGPYHDILLEN
RNGRYVDVSVQARIPRNTESRGVTAGDFNNDGFVDLHVTVYNSFDIMLLN
RGDGTFRSVSQPINRPGNTRGDHAVAFDYDRDGRLDLVSSQGDHNDVKLG
GSYRLFKNVSPMNNKRNFLIVRVGNPWNRGCTPLHAEVLVISGGLRMKRR
VGSPGTAVSNSYLEILHFGLGSRRWVNNIYVRYTCGFVLSKKNVGAGNTV
NLGWV*
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spliced messenger RNA

>Gchil2634.t1 ID=Gchil2634.t1|Name=Gchil2634.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at tig00004400_pilon:2077928..2079445- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTGGTCGCCTCTCTTTTTCATATTTGGTGCAGTGGTGGTCCATTT
GTCATATGTCCACGCGCAACCCCTCGCTTATTTCCGAGATACCACCGGTG
CATCTGGACTTTACGACCCACGTCGCTTAAAAAAATATGGCGGACCGACC
GTCGTCGATCTAGACCGCGACGGCTATCCCGACCTTCTCTTCAACCACCA
CGACTCTGTCGCCTCTCAACTGTTCTGGAACAACCGTGATGGCACCTTTT
CCCAATCCACTTGGAAGCTTTGGCACGATATCCACGGAATAAATCCCTTC
CCAGTCTCACCATGGACGAAGAACATGCGCTTCACCCTCTCCGTAGGGGG
TAATTATGGACGTAATCCGAGCTCTCCGTACATGTATGAAGTGGATGCTG
CGACGCGCAACGTGCGTTTAGTTACTGCGGAAGCTGGAATTTCTTTGAGG
GGGGGTAGGGGGCGTACTGCGTTGTACTTGGACTTTTCCAATCGAGCCCA
CACGCTCTGGCCGGATGTGCTTTTCATCAATGCTAAGGCGCTGAAGGGTT
CCAACCAATATGCGTACGAGCAATCGAAAGCTGGCGTTTTTCGGTTGAAA
AACATACGAGGCCCGTTTCAGTTTACCGAAGAACAATTTGGTACTGTCAC
AGATATTGATGGCGATGGTATCATGGAGGTGCTAACTTACTGGACGCTGA
GAGTTTGGAAAATCACTCGCCCTTTCACACTGAAGGAAATCACGAAAAAC
GTGTTACCATCCGAGACGCCGTATAGAGGAGTGGCAGCCATCGCTGAAAT
CGACTTTGATAACGATGGAGACTTTGACCTTTACATTGCGCGCTCGCGCA
TTGGATGGTGGATGCCGCAGGGTCCTTATCACGATATTCTGCTTGAAAAC
AGGAACGGACGCTATGTTGACGTGAGCGTTCAAGCAAGAATTCCGAGAAA
TACGGAGTCGAGAGGAGTGACTGCGGGCGACTTCAACAATGATGGGTTTG
TCGACCTACACGTCACGGTGTACAATTCGTTTGATATAATGTTGTTGAAT
CGAGGGGATGGCACGTTTAGATCGGTAAGTCAGCCGATCAATCGGCCTGG
AAATACACGCGGAGATCATGCTGTGGCGTTTGACTATGACCGAGACGGTC
GCCTTGACTTGGTGTCAAGTCAAGGCGATCACAATGACGTGAAACTGGGA
GGGTCATACCGACTGTTCAAGAATGTATCTCCTATGAACAACAAGCGAAA
CTTTTTGATAGTGCGCGTCGGCAACCCTTGGAACCGAGGGTGCACCCCCC
TTCATGCCGAAGTGCTTGTTATATCGGGCGGGCTGAGAATGAAGCGACGA
GTAGGCTCTCCCGGCACGGCTGTGTCGAACTCGTACCTGGAAATATTGCA
CTTTGGTCTGGGTAGCAGGCGATGGGTAAACAATATCTATGTGAGGTACA
CTTGCGGATTTGTTTTGTCTAAGAAGAATGTTGGGGCAGGAAACACTGTG
AATTTGGGTTGGGTGTAG
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protein sequence of Gchil2634.t1

>Gchil2634.t1 ID=Gchil2634.t1|Name=Gchil2634.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=506bp
MNWSPLFFIFGAVVVHLSYVHAQPLAYFRDTTGASGLYDPRRLKKYGGPT
VVDLDRDGYPDLLFNHHDSVASQLFWNNRDGTFSQSTWKLWHDIHGINPF
PVSPWTKNMRFTLSVGGNYGRNPSSPYMYEVDAATRNVRLVTAEAGISLR
GGRGRTALYLDFSNRAHTLWPDVLFINAKALKGSNQYAYEQSKAGVFRLK
NIRGPFQFTEEQFGTVTDIDGDGIMEVLTYWTLRVWKITRPFTLKEITKN
VLPSETPYRGVAAIAEIDFDNDGDFDLYIARSRIGWWMPQGPYHDILLEN
RNGRYVDVSVQARIPRNTESRGVTAGDFNNDGFVDLHVTVYNSFDIMLLN
RGDGTFRSVSQPINRPGNTRGDHAVAFDYDRDGRLDLVSSQGDHNDVKLG
GSYRLFKNVSPMNNKRNFLIVRVGNPWNRGCTPLHAEVLVISGGLRMKRR
VGSPGTAVSNSYLEILHFGLGSRRWVNNIYVRYTCGFVLSKKNVGAGNTV
NLGWV*
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mRNA from alignment at tig00004400_pilon:2077928..2079445-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2634.t1 ID=Gchil2634.t1|Name=Gchil2634.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at tig00004400_pilon:2077928..2079445- (Gracilaria chilensis NLEC103_M9 male)
ATGAATTGGTCGCCTCTCTTTTTCATATTTGGTGCAGTGGTGGTCCATTT
GTCATATGTCCACGCGCAACCCCTCGCTTATTTCCGAGATACCACCGGTG
CATCTGGACTTTACGACCCACGTCGCTTAAAAAAATATGGCGGACCGACC
GTCGTCGATCTAGACCGCGACGGCTATCCCGACCTTCTCTTCAACCACCA
CGACTCTGTCGCCTCTCAACTGTTCTGGAACAACCGTGATGGCACCTTTT
CCCAATCCACTTGGAAGCTTTGGCACGATATCCACGGAATAAATCCCTTC
CCAGTCTCACCATGGACGAAGAACATGCGCTTCACCCTCTCCGTAGGGGG
TAATTATGGACGTAATCCGAGCTCTCCGTACATGTATGAAGTGGATGCTG
CGACGCGCAACGTGCGTTTAGTTACTGCGGAAGCTGGAATTTCTTTGAGG
GGGGGTAGGGGGCGTACTGCGTTGTACTTGGACTTTTCCAATCGAGCCCA
CACGCTCTGGCCGGATGTGCTTTTCATCAATGCTAAGGCGCTGAAGGGTT
CCAACCAATATGCGTACGAGCAATCGAAAGCTGGCGTTTTTCGGTTGAAA
AACATACGAGGCCCGTTTCAGTTTACCGAAGAACAATTTGGTACTGTCAC
AGATATTGATGGCGATGGTATCATGGAGGTGCTAACTTACTGGACGCTGA
GAGTTTGGAAAATCACTCGCCCTTTCACACTGAAGGAAATCACGAAAAAC
GTGTTACCATCCGAGACGCCGTATAGAGGAGTGGCAGCCATCGCTGAAAT
CGACTTTGATAACGATGGAGACTTTGACCTTTACATTGCGCGCTCGCGCA
TTGGATGGTGGATGCCGCAGGGTCCTTATCACGATATTCTGCTTGAAAAC
AGGAACGGACGCTATGTTGACGTGAGCGTTCAAGCAAGAATTCCGAGAAA
TACGGAGTCGAGAGGAGTGACTGCGGGCGACTTCAACAATGATGGGTTTG
TCGACCTACACGTCACGGTGTACAATTCGTTTGATATAATGTTGTTGAAT
CGAGGGGATGGCACGTTTAGATCGGTAAGTCAGCCGATCAATCGGCCTGG
AAATACACGCGGAGATCATGCTGTGGCGTTTGACTATGACCGAGACGGTC
GCCTTGACTTGGTGTCAAGTCAAGGCGATCACAATGACGTGAAACTGGGA
GGGTCATACCGACTGTTCAAGAATGTATCTCCTATGAACAACAAGCGAAA
CTTTTTGATAGTGCGCGTCGGCAACCCTTGGAACCGAGGGTGCACCCCCC
TTCATGCCGAAGTGCTTGTTATATCGGGCGGGCTGAGAATGAAGCGACGA
GTAGGCTCTCCCGGCACGGCTGTGTCGAACTCGTACCTGGAAATATTGCA
CTTTGGTCTGGGTAGCAGGCGATGGGTAAACAATATCTATGTGAGGTACA
CTTGCGGATTTGTTTTGTCTAAGAAGAATGTTGGGGCAGGAAACACTGTG
AATTTGGGTTGGGTGTAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:2077928..2079445-

>Gchil2634.t1 ID=Gchil2634.t1|Name=Gchil2634.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1518bp|location=Sequence derived from alignment at tig00004400_pilon:2077928..2079445- (Gracilaria chilensis NLEC103_M9 male)
ATGAATTGGTCGCCTCTCTTTTTCATATTTGGTGCAGTGGTGGTCCATTT
GTCATATGTCCACGCGCAACCCCTCGCTTATTTCCGAGATACCACCGGTG
CATCTGGACTTTACGACCCACGTCGCTTAAAAAAATATGGCGGACCGACC
GTCGTCGATCTAGACCGCGACGGCTATCCCGACCTTCTCTTCAACCACCA
CGACTCTGTCGCCTCTCAACTGTTCTGGAACAACCGTGATGGCACCTTTT
CCCAATCCACTTGGAAGCTTTGGCACGATATCCACGGAATAAATCCCTTC
CCAGTCTCACCATGGACGAAGAACATGCGCTTCACCCTCTCCGTAGGGGG
TAATTATGGACGTAATCCGAGCTCTCCGTACATGTATGAAGTGGATGCTG
CGACGCGCAACGTGCGTTTAGTTACTGCGGAAGCTGGAATTTCTTTGAGG
GGGGGTAGGGGGCGTACTGCGTTGTACTTGGACTTTTCCAATCGAGCCCA
CACGCTCTGGCCGGATGTGCTTTTCATCAATGCTAAGGCGCTGAAGGGTT
CCAACCAATATGCGTACGAGCAATCGAAAGCTGGCGTTTTTCGGTTGAAA
AACATACGAGGCCCGTTTCAGTTTACCGAAGAACAATTTGGTACTGTCAC
AGATATTGATGGCGATGGTATCATGGAGGTGCTAACTTACTGGACGCTGA
GAGTTTGGAAAATCACTCGCCCTTTCACACTGAAGGAAATCACGAAAAAC
GTGTTACCATCCGAGACGCCGTATAGAGGAGTGGCAGCCATCGCTGAAAT
CGACTTTGATAACGATGGAGACTTTGACCTTTACATTGCGCGCTCGCGCA
TTGGATGGTGGATGCCGCAGGGTCCTTATCACGATATTCTGCTTGAAAAC
AGGAACGGACGCTATGTTGACGTGAGCGTTCAAGCAAGAATTCCGAGAAA
TACGGAGTCGAGAGGAGTGACTGCGGGCGACTTCAACAATGATGGGTTTG
TCGACCTACACGTCACGGTGTACAATTCGTTTGATATAATGTTGTTGAAT
CGAGGGGATGGCACGTTTAGATCGGTAAGTCAGCCGATCAATCGGCCTGG
AAATACACGCGGAGATCATGCTGTGGCGTTTGACTATGACCGAGACGGTC
GCCTTGACTTGGTGTCAAGTCAAGGCGATCACAATGACGTGAAACTGGGA
GGGTCATACCGACTGTTCAAGAATGTATCTCCTATGAACAACAAGCGAAA
CTTTTTGATAGTGCGCGTCGGCAACCCTTGGAACCGAGGGTGCACCCCCC
TTCATGCCGAAGTGCTTGTTATATCGGGCGGGCTGAGAATGAAGCGACGA
GTAGGCTCTCCCGGCACGGCTGTGTCGAACTCGTACCTGGAAATATTGCA
CTTTGGTCTGGGTAGCAGGCGATGGGTAAACAATATCTATGTGAGGTACA
CTTGCGGATTTGTTTTGTCTAAGAAGAATGTTGGGGCAGGAAACACTGTG
AATTTGGGTTGGGTGTAG
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