Gchil2385.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2385.t1
Unique NameGchil2385.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length231
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:304460..305152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008874224.1
Preferred nameCOQ4
PFAMsCoq4
Max annot lvl2759|Eukaryota
KEGG koko:K18586
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016020,GO:0019866,GO:0019898,GO:0031090,GO:0031312,GO:0031314,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901661,GO:1901663
Evalue2.11e-48
EggNOG OGsCOG5031@1|root,KOG3244@2759|Eukaryota
Descriptionubiquinone biosynthetic process
COG categoryH
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2385Gchil2385Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 304460..305152 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2385.t1.start1Gchil2385.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 304460..304462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2385.t1.CDS1Gchil2385.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 304460..305152 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2385.t1.exon1Gchil2385.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 304460..305152 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2385.t1.stop1Gchil2385.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 305150..305152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2385.t1Gchil2385.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 304460..305152 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2385.t1 ID=Gchil2385.t1|Name=Gchil2385.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=231bp
MTQGLSVVSRALLTAGSAAITFANPARADMLALLGDLTSGAATTQLVRRL
QQSEEGRQMLTTQQPSRFPEHGSASLEALRALPPRTLGREYARFMDKHGF
SPESRARVRFVQDAQQQWVLQRYRDVHDVWHVLTGLPPTLLGETAQKMFE
AAHTGLPVAVLAGFAGCVRVRGDERRVLVTTLLPWALRCGRGAADLLAVR
YEHYLRHDVDELRRLWRVSVPNVHVRGLRR*
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spliced messenger RNA

>Gchil2385.t1 ID=Gchil2385.t1|Name=Gchil2385.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=693bp|location=Sequence derived from alignment at tig00004400_pilon:304460..305152+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCAAGGGCTATCGGTGGTGTCACGCGCGCTGCTTACGGCAGGCAG
CGCAGCAATCACATTTGCCAACCCGGCGCGCGCCGACATGCTAGCTCTTC
TGGGCGATCTGACGTCCGGCGCGGCAACGACGCAGCTAGTGCGACGGCTC
CAACAGAGCGAGGAAGGGCGACAAATGTTAACGACACAACAACCATCACG
CTTCCCCGAGCACGGCAGCGCGTCATTAGAAGCGCTACGCGCGCTTCCAC
CACGCACTCTCGGCCGCGAATACGCGCGCTTCATGGACAAGCACGGCTTC
TCGCCGGAGTCGCGCGCGCGCGTGCGCTTCGTACAGGACGCACAGCAACA
GTGGGTGTTACAACGGTATCGCGACGTACACGATGTGTGGCACGTGCTGA
CGGGGTTGCCGCCAACGCTGCTGGGCGAGACGGCACAGAAGATGTTCGAG
GCCGCTCATACCGGACTGCCCGTGGCCGTGCTTGCCGGCTTTGCTGGGTG
CGTTCGCGTGCGTGGCGACGAGCGACGCGTGTTGGTGACGACGCTGCTGC
CGTGGGCGCTGCGCTGCGGCCGAGGCGCGGCTGATCTACTTGCCGTGCGC
TACGAGCACTACCTGCGCCACGACGTGGACGAGCTGCGTCGTCTGTGGCG
CGTGTCGGTGCCGAACGTACATGTACGCGGCCTTCGTCGCTAA
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protein sequence of Gchil2385.t1

>Gchil2385.t1 ID=Gchil2385.t1|Name=Gchil2385.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=231bp
MTQGLSVVSRALLTAGSAAITFANPARADMLALLGDLTSGAATTQLVRRL
QQSEEGRQMLTTQQPSRFPEHGSASLEALRALPPRTLGREYARFMDKHGF
SPESRARVRFVQDAQQQWVLQRYRDVHDVWHVLTGLPPTLLGETAQKMFE
AAHTGLPVAVLAGFAGCVRVRGDERRVLVTTLLPWALRCGRGAADLLAVR
YEHYLRHDVDELRRLWRVSVPNVHVRGLRR*
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mRNA from alignment at tig00004400_pilon:304460..305152+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2385.t1 ID=Gchil2385.t1|Name=Gchil2385.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=693bp|location=Sequence derived from alignment at tig00004400_pilon:304460..305152+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGCAAGGGCTATCGGTGGTGTCACGCGCGCTGCTTACGGCAGGCAG
CGCAGCAATCACATTTGCCAACCCGGCGCGCGCCGACATGCTAGCTCTTC
TGGGCGATCTGACGTCCGGCGCGGCAACGACGCAGCTAGTGCGACGGCTC
CAACAGAGCGAGGAAGGGCGACAAATGTTAACGACACAACAACCATCACG
CTTCCCCGAGCACGGCAGCGCGTCATTAGAAGCGCTACGCGCGCTTCCAC
CACGCACTCTCGGCCGCGAATACGCGCGCTTCATGGACAAGCACGGCTTC
TCGCCGGAGTCGCGCGCGCGCGTGCGCTTCGTACAGGACGCACAGCAACA
GTGGGTGTTACAACGGTATCGCGACGTACACGATGTGTGGCACGTGCTGA
CGGGGTTGCCGCCAACGCTGCTGGGCGAGACGGCACAGAAGATGTTCGAG
GCCGCTCATACCGGACTGCCCGTGGCCGTGCTTGCCGGCTTTGCTGGGTG
CGTTCGCGTGCGTGGCGACGAGCGACGCGTGTTGGTGACGACGCTGCTGC
CGTGGGCGCTGCGCTGCGGCCGAGGCGCGGCTGATCTACTTGCCGTGCGC
TACGAGCACTACCTGCGCCACGACGTGGACGAGCTGCGTCGTCTGTGGCG
CGTGTCGGTGCCGAACGTACATGTACGCGGCCTTCGTCGCTAA
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Coding sequence (CDS) from alignment at tig00004400_pilon:304460..305152+

>Gchil2385.t1 ID=Gchil2385.t1|Name=Gchil2385.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=693bp|location=Sequence derived from alignment at tig00004400_pilon:304460..305152+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGCAAGGGCTATCGGTGGTGTCACGCGCGCTGCTTACGGCAGGCAG
CGCAGCAATCACATTTGCCAACCCGGCGCGCGCCGACATGCTAGCTCTTC
TGGGCGATCTGACGTCCGGCGCGGCAACGACGCAGCTAGTGCGACGGCTC
CAACAGAGCGAGGAAGGGCGACAAATGTTAACGACACAACAACCATCACG
CTTCCCCGAGCACGGCAGCGCGTCATTAGAAGCGCTACGCGCGCTTCCAC
CACGCACTCTCGGCCGCGAATACGCGCGCTTCATGGACAAGCACGGCTTC
TCGCCGGAGTCGCGCGCGCGCGTGCGCTTCGTACAGGACGCACAGCAACA
GTGGGTGTTACAACGGTATCGCGACGTACACGATGTGTGGCACGTGCTGA
CGGGGTTGCCGCCAACGCTGCTGGGCGAGACGGCACAGAAGATGTTCGAG
GCCGCTCATACCGGACTGCCCGTGGCCGTGCTTGCCGGCTTTGCTGGGTG
CGTTCGCGTGCGTGGCGACGAGCGACGCGTGTTGGTGACGACGCTGCTGC
CGTGGGCGCTGCGCTGCGGCCGAGGCGCGGCTGATCTACTTGCCGTGCGC
TACGAGCACTACCTGCGCCACGACGTGGACGAGCTGCGTCGTCTGTGGCG
CGTGTCGGTGCCGAACGTACATGTACGCGGCCTTCGTCGCTAA
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