Gchil2657.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2657.t1
Unique Name	Gchil2657.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	722

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:2220285..2222541 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173021.ALWA01000019_gene487
PFAMs	ABC1
Max annot lvl	1117\|Cyanobacteria
Evalue	1.49e-134
EggNOG OGs	COG0661@1\|root,COG0661@2\|Bacteria,1G181@1117\|Cyanobacteria
Description	unusual protein kinase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2657	Gchil2657	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 2220285..2222541 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2657.t1	Gchil2657.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 2220285..2222541 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2657.t1.start1	Gchil2657.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 2220285..2220287 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2657.t1.CDS1	Gchil2657.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 2220285..2220385 +
Gchil2657.t1.CDS2	Gchil2657.t1.CDS2	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 2220477..2222541 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2657.t1.exon1	Gchil2657.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 2220285..2220385 +
Gchil2657.t1.exon2	Gchil2657.t1.exon2	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 2220477..2222541 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2657.t1.intron1	Gchil2657.t1.intron1	Gracilaria chilensis NLEC103_M9 male	intron	tig00004400_pilon 2220386..2220476 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2657.t1.stop1	Gchil2657.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 2222539..2222541 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:2220285..2222541+
coding sequence from alignment at tig00004400_pilon:2220285..2222541+

mRNA sequence

>Gchil2657.t1 ID=Gchil2657.t1|Name=Gchil2657.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=722bp
MASVWRSRKSKHLPTCQREQHRPKYPLLEVALLARHLRLSPRRPYASVSG
QTVERGFKLFRSDLSRLSRLFRGDLSVILDKSLALNRYDAAAIAEYYDAR
PLTALVRITSVGIPFLVWLFRVRKWDKWRGAAGQEGTTSMRAEQLRRLLT
WAGPTYLKVGQAVGNRPDLVGVVYSNELQKLVDDVGTFDGNVAVKMVREE
LQLKDLSDLFSEFGVEAVASASLGQVHYAKLKNGDRIAVKVQRPTVERDA
ALDVYVLRKVALYAKKRFKLRSDLVGIVDEFATRLWEELDYVNEANNCEN
FERLYTKSNEDVIVPKIYRNLTTKKILTMEWIDGDKAPWEPNQEAQRLIR
IGVQCSLQQLLDKGFVHADPHGGNLLRTKEGKLCYLDFGMCVEVEQETRY
NLVAAIVRLINRDYENLAEDFLKLGFLPPDAETEPLVPLLATAFGDASTS
SALSDLSFSRLTNNLSDLAFKTPIRIPVFFTLIIRSLTILEGFALQTDAA
FKIVDESYPYVVQRILTDDSPVFQRALENVLIDQTSGRIRWNRFSSLLNS
RSSSLPQESEAGDSERPGDPFISKNGTLEGVSNTALSRLIDFTLSNRGDF
LRRALQLELADTADALQLALLKRVSDATYGLLPSPREDVDMNRVETAIKM
AKVLRVRAPEVLSTFAKDQPQSRQIRRERQRLLAKRAMEASRAVVGSVTE
RNTIRVLRKAISTIFRRREES*

spliced messenger RNA

>Gchil2657.t1 ID=Gchil2657.t1|Name=Gchil2657.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2166bp|location=Sequence derived from alignment at tig00004400_pilon:2220285..2222541+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCGGTCTGGCGGTCGCGAAAATCGAAGCATCTCCCAACATGTCA
GCGAGAACAACATCGCCCAAAGTACCCATTACTTGAAGTTGCACTGTTAG
CGCGCCATCTTCGACTGTCACCAAGACGACCATATGCATCTGTATCTGGA
CAAACAGTGGAACGAGGCTTTAAATTGTTCCGCTCTGATCTATCACGACT
TTCACGCCTGTTTCGAGGAGATCTGTCGGTAATCTTAGATAAATCCTTGG
CACTGAATCGATATGACGCCGCCGCCATTGCAGAGTACTACGATGCACGC
CCCTTAACAGCTCTCGTGCGCATCACTTCAGTTGGCATTCCGTTTCTCGT
ATGGTTGTTTCGTGTTCGAAAGTGGGATAAATGGAGAGGTGCTGCTGGGC
AGGAGGGCACAACTTCTATGCGTGCTGAACAATTGCGAAGACTGCTGACA
TGGGCTGGACCTACGTATCTGAAAGTTGGTCAGGCAGTCGGCAATCGTCC
TGATCTCGTCGGTGTCGTGTACAGCAATGAGCTCCAAAAGCTTGTCGATG
ATGTTGGAACTTTCGATGGCAACGTGGCCGTGAAAATGGTTCGTGAGGAG
CTACAACTGAAAGATCTCTCAGACCTTTTCTCAGAGTTCGGCGTCGAAGC
GGTAGCGAGCGCTTCCCTTGGGCAAGTGCACTACGCTAAGCTCAAGAACG
GAGACCGTATTGCGGTCAAAGTGCAAAGGCCTACAGTTGAACGTGATGCA
GCGCTCGACGTCTACGTGTTGAGGAAGGTGGCTTTGTACGCGAAAAAACG
CTTCAAATTACGAAGTGATCTGGTTGGCATTGTAGACGAATTTGCGACGC
GTCTTTGGGAGGAATTGGACTATGTGAATGAAGCAAACAACTGTGAAAAT
TTCGAACGCCTGTATACGAAGTCGAACGAAGATGTCATCGTTCCAAAGAT
ATACAGGAACTTAACTACAAAGAAGATTTTAACTATGGAATGGATTGATG
GTGATAAAGCACCGTGGGAGCCAAACCAAGAAGCCCAGAGACTAATTCGT
ATCGGAGTACAATGCAGTCTTCAACAGCTTTTGGACAAAGGGTTTGTGCA
TGCCGATCCGCATGGAGGTAACCTTTTACGCACGAAGGAAGGAAAGCTTT
GTTATCTCGATTTTGGGATGTGCGTGGAGGTTGAACAAGAAACAAGGTAC
AATTTGGTTGCTGCCATAGTGCGTCTTATAAACCGTGACTATGAGAATCT
TGCGGAGGACTTTCTCAAGCTAGGATTTCTACCACCGGATGCAGAGACAG
AGCCTCTTGTTCCACTACTAGCAACTGCTTTTGGCGACGCGAGCACAAGC
AGCGCACTCTCGGATCTCTCATTCAGTCGGCTCACGAACAATTTGAGCGA
TCTCGCTTTTAAAACTCCTATTCGTATTCCTGTGTTCTTCACGCTAATTA
TACGGTCCTTAACTATTCTGGAAGGATTTGCACTCCAGACAGACGCAGCC
TTCAAAATTGTGGATGAATCATATCCGTATGTAGTGCAGCGTATCCTAAC
GGATGATTCACCTGTGTTTCAACGGGCATTGGAGAATGTTCTCATTGACC
AAACGTCTGGTCGTATTCGGTGGAATCGTTTCAGTTCATTGCTTAACTCA
AGATCTTCGTCTCTACCACAAGAAAGCGAAGCTGGTGACAGCGAACGACC
TGGAGACCCTTTTATCTCAAAGAATGGAACCTTGGAAGGTGTCAGCAACA
CTGCTCTCAGCCGTTTAATCGACTTTACTCTTAGCAACCGCGGTGATTTT
CTTCGTCGAGCGTTGCAGTTAGAGCTTGCAGACACGGCCGATGCTTTGCA
ACTTGCCCTTCTTAAGCGAGTTTCTGATGCGACTTACGGTCTTCTCCCAT
CTCCCAGAGAAGATGTTGATATGAATCGTGTTGAGACAGCCATTAAAATG
GCGAAAGTCCTTCGAGTTCGTGCGCCTGAAGTGCTCTCTACTTTTGCAAA
AGACCAACCACAGTCAAGGCAAATTAGAAGGGAAAGACAAAGGCTATTGG
CCAAAAGAGCAATGGAAGCTTCGCGCGCTGTTGTGGGTTCCGTAACAGAA
CGAAACACTATTCGAGTGCTTCGCAAGGCAATCAGTACCATATTCAGAAG
ACGAGAAGAAAGCTAG

protein sequence of Gchil2657.t1

>Gchil2657.t1 ID=Gchil2657.t1|Name=Gchil2657.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=722bp
MASVWRSRKSKHLPTCQREQHRPKYPLLEVALLARHLRLSPRRPYASVSG
QTVERGFKLFRSDLSRLSRLFRGDLSVILDKSLALNRYDAAAIAEYYDAR
PLTALVRITSVGIPFLVWLFRVRKWDKWRGAAGQEGTTSMRAEQLRRLLT
WAGPTYLKVGQAVGNRPDLVGVVYSNELQKLVDDVGTFDGNVAVKMVREE
LQLKDLSDLFSEFGVEAVASASLGQVHYAKLKNGDRIAVKVQRPTVERDA
ALDVYVLRKVALYAKKRFKLRSDLVGIVDEFATRLWEELDYVNEANNCEN
FERLYTKSNEDVIVPKIYRNLTTKKILTMEWIDGDKAPWEPNQEAQRLIR
IGVQCSLQQLLDKGFVHADPHGGNLLRTKEGKLCYLDFGMCVEVEQETRY
NLVAAIVRLINRDYENLAEDFLKLGFLPPDAETEPLVPLLATAFGDASTS
SALSDLSFSRLTNNLSDLAFKTPIRIPVFFTLIIRSLTILEGFALQTDAA
FKIVDESYPYVVQRILTDDSPVFQRALENVLIDQTSGRIRWNRFSSLLNS
RSSSLPQESEAGDSERPGDPFISKNGTLEGVSNTALSRLIDFTLSNRGDF
LRRALQLELADTADALQLALLKRVSDATYGLLPSPREDVDMNRVETAIKM
AKVLRVRAPEVLSTFAKDQPQSRQIRRERQRLLAKRAMEASRAVVGSVTE
RNTIRVLRKAISTIFRRREES*

mRNA from alignment at tig00004400_pilon:2220285..2222541+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2657.t1 ID=Gchil2657.t1|Name=Gchil2657.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2257bp|location=Sequence derived from alignment at tig00004400_pilon:2220285..2222541+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCATCGGTCTGGCGGTCGCGAAAATCGAAGCATCTCCCAACATGTCA
GCGAGAACAACATCGCCCAAAGTACCCATTACTTGAAGTTGCACTGTTAG
CGTAATTCAGTATTCCCACCTACAAGGTTTGAGCAGATGGCGTTTATTGC
AGCTCGCCCCCTAACTCGCCACTTATCGATCGTACCGTGTAGGCGCCATC
TTCGACTGTCACCAAGACGACCATATGCATCTGTATCTGGACAAACAGTG
GAACGAGGCTTTAAATTGTTCCGCTCTGATCTATCACGACTTTCACGCCT
GTTTCGAGGAGATCTGTCGGTAATCTTAGATAAATCCTTGGCACTGAATC
GATATGACGCCGCCGCCATTGCAGAGTACTACGATGCACGCCCCTTAACA
GCTCTCGTGCGCATCACTTCAGTTGGCATTCCGTTTCTCGTATGGTTGTT
TCGTGTTCGAAAGTGGGATAAATGGAGAGGTGCTGCTGGGCAGGAGGGCA
CAACTTCTATGCGTGCTGAACAATTGCGAAGACTGCTGACATGGGCTGGA
CCTACGTATCTGAAAGTTGGTCAGGCAGTCGGCAATCGTCCTGATCTCGT
CGGTGTCGTGTACAGCAATGAGCTCCAAAAGCTTGTCGATGATGTTGGAA
CTTTCGATGGCAACGTGGCCGTGAAAATGGTTCGTGAGGAGCTACAACTG
AAAGATCTCTCAGACCTTTTCTCAGAGTTCGGCGTCGAAGCGGTAGCGAG
CGCTTCCCTTGGGCAAGTGCACTACGCTAAGCTCAAGAACGGAGACCGTA
TTGCGGTCAAAGTGCAAAGGCCTACAGTTGAACGTGATGCAGCGCTCGAC
GTCTACGTGTTGAGGAAGGTGGCTTTGTACGCGAAAAAACGCTTCAAATT
ACGAAGTGATCTGGTTGGCATTGTAGACGAATTTGCGACGCGTCTTTGGG
AGGAATTGGACTATGTGAATGAAGCAAACAACTGTGAAAATTTCGAACGC
CTGTATACGAAGTCGAACGAAGATGTCATCGTTCCAAAGATATACAGGAA
CTTAACTACAAAGAAGATTTTAACTATGGAATGGATTGATGGTGATAAAG
CACCGTGGGAGCCAAACCAAGAAGCCCAGAGACTAATTCGTATCGGAGTA
CAATGCAGTCTTCAACAGCTTTTGGACAAAGGGTTTGTGCATGCCGATCC
GCATGGAGGTAACCTTTTACGCACGAAGGAAGGAAAGCTTTGTTATCTCG
ATTTTGGGATGTGCGTGGAGGTTGAACAAGAAACAAGGTACAATTTGGTT
GCTGCCATAGTGCGTCTTATAAACCGTGACTATGAGAATCTTGCGGAGGA
CTTTCTCAAGCTAGGATTTCTACCACCGGATGCAGAGACAGAGCCTCTTG
TTCCACTACTAGCAACTGCTTTTGGCGACGCGAGCACAAGCAGCGCACTC
TCGGATCTCTCATTCAGTCGGCTCACGAACAATTTGAGCGATCTCGCTTT
TAAAACTCCTATTCGTATTCCTGTGTTCTTCACGCTAATTATACGGTCCT
TAACTATTCTGGAAGGATTTGCACTCCAGACAGACGCAGCCTTCAAAATT
GTGGATGAATCATATCCGTATGTAGTGCAGCGTATCCTAACGGATGATTC
ACCTGTGTTTCAACGGGCATTGGAGAATGTTCTCATTGACCAAACGTCTG
GTCGTATTCGGTGGAATCGTTTCAGTTCATTGCTTAACTCAAGATCTTCG
TCTCTACCACAAGAAAGCGAAGCTGGTGACAGCGAACGACCTGGAGACCC
TTTTATCTCAAAGAATGGAACCTTGGAAGGTGTCAGCAACACTGCTCTCA
GCCGTTTAATCGACTTTACTCTTAGCAACCGCGGTGATTTTCTTCGTCGA
GCGTTGCAGTTAGAGCTTGCAGACACGGCCGATGCTTTGCAACTTGCCCT
TCTTAAGCGAGTTTCTGATGCGACTTACGGTCTTCTCCCATCTCCCAGAG
AAGATGTTGATATGAATCGTGTTGAGACAGCCATTAAAATGGCGAAAGTC
CTTCGAGTTCGTGCGCCTGAAGTGCTCTCTACTTTTGCAAAAGACCAACC
ACAGTCAAGGCAAATTAGAAGGGAAAGACAAAGGCTATTGGCCAAAAGAG
CAATGGAAGCTTCGCGCGCTGTTGTGGGTTCCGTAACAGAACGAAACACT
ATTCGAGTGCTTCGCAAGGCAATCAGTACCATATTCAGAAGACGAGAAGA
AAGCTAG

Coding sequence (CDS) from alignment at tig00004400_pilon:2220285..2222541+

>Gchil2657.t1 ID=Gchil2657.t1|Name=Gchil2657.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2166bp|location=Sequence derived from alignment at tig00004400_pilon:2220285..2222541+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCATCGGTCTGGCGGTCGCGAAAATCGAAGCATCTCCCAACATGTCA
GCGAGAACAACATCGCCCAAAGTACCCATTACTTGAAGTTGCACTGTTAG
CGCGCCATCTTCGACTGTCACCAAGACGACCATATGCATCTGTATCTGGA
CAAACAGTGGAACGAGGCTTTAAATTGTTCCGCTCTGATCTATCACGACT
TTCACGCCTGTTTCGAGGAGATCTGTCGGTAATCTTAGATAAATCCTTGG
CACTGAATCGATATGACGCCGCCGCCATTGCAGAGTACTACGATGCACGC
CCCTTAACAGCTCTCGTGCGCATCACTTCAGTTGGCATTCCGTTTCTCGT
ATGGTTGTTTCGTGTTCGAAAGTGGGATAAATGGAGAGGTGCTGCTGGGC
AGGAGGGCACAACTTCTATGCGTGCTGAACAATTGCGAAGACTGCTGACA
TGGGCTGGACCTACGTATCTGAAAGTTGGTCAGGCAGTCGGCAATCGTCC
TGATCTCGTCGGTGTCGTGTACAGCAATGAGCTCCAAAAGCTTGTCGATG
ATGTTGGAACTTTCGATGGCAACGTGGCCGTGAAAATGGTTCGTGAGGAG
CTACAACTGAAAGATCTCTCAGACCTTTTCTCAGAGTTCGGCGTCGAAGC
GGTAGCGAGCGCTTCCCTTGGGCAAGTGCACTACGCTAAGCTCAAGAACG
GAGACCGTATTGCGGTCAAAGTGCAAAGGCCTACAGTTGAACGTGATGCA
GCGCTCGACGTCTACGTGTTGAGGAAGGTGGCTTTGTACGCGAAAAAACG
CTTCAAATTACGAAGTGATCTGGTTGGCATTGTAGACGAATTTGCGACGC
GTCTTTGGGAGGAATTGGACTATGTGAATGAAGCAAACAACTGTGAAAAT
TTCGAACGCCTGTATACGAAGTCGAACGAAGATGTCATCGTTCCAAAGAT
ATACAGGAACTTAACTACAAAGAAGATTTTAACTATGGAATGGATTGATG
GTGATAAAGCACCGTGGGAGCCAAACCAAGAAGCCCAGAGACTAATTCGT
ATCGGAGTACAATGCAGTCTTCAACAGCTTTTGGACAAAGGGTTTGTGCA
TGCCGATCCGCATGGAGGTAACCTTTTACGCACGAAGGAAGGAAAGCTTT
GTTATCTCGATTTTGGGATGTGCGTGGAGGTTGAACAAGAAACAAGGTAC
AATTTGGTTGCTGCCATAGTGCGTCTTATAAACCGTGACTATGAGAATCT
TGCGGAGGACTTTCTCAAGCTAGGATTTCTACCACCGGATGCAGAGACAG
AGCCTCTTGTTCCACTACTAGCAACTGCTTTTGGCGACGCGAGCACAAGC
AGCGCACTCTCGGATCTCTCATTCAGTCGGCTCACGAACAATTTGAGCGA
TCTCGCTTTTAAAACTCCTATTCGTATTCCTGTGTTCTTCACGCTAATTA
TACGGTCCTTAACTATTCTGGAAGGATTTGCACTCCAGACAGACGCAGCC
TTCAAAATTGTGGATGAATCATATCCGTATGTAGTGCAGCGTATCCTAAC
GGATGATTCACCTGTGTTTCAACGGGCATTGGAGAATGTTCTCATTGACC
AAACGTCTGGTCGTATTCGGTGGAATCGTTTCAGTTCATTGCTTAACTCA
AGATCTTCGTCTCTACCACAAGAAAGCGAAGCTGGTGACAGCGAACGACC
TGGAGACCCTTTTATCTCAAAGAATGGAACCTTGGAAGGTGTCAGCAACA
CTGCTCTCAGCCGTTTAATCGACTTTACTCTTAGCAACCGCGGTGATTTT
CTTCGTCGAGCGTTGCAGTTAGAGCTTGCAGACACGGCCGATGCTTTGCA
ACTTGCCCTTCTTAAGCGAGTTTCTGATGCGACTTACGGTCTTCTCCCAT
CTCCCAGAGAAGATGTTGATATGAATCGTGTTGAGACAGCCATTAAAATG
GCGAAAGTCCTTCGAGTTCGTGCGCCTGAAGTGCTCTCTACTTTTGCAAA
AGACCAACCACAGTCAAGGCAAATTAGAAGGGAAAGACAAAGGCTATTGG
CCAAAAGAGCAATGGAAGCTTCGCGCGCTGTTGTGGGTTCCGTAACAGAA
CGAAACACTATTCGAGTGCTTCGCAAGGCAATCAGTACCATATTCAGAAG
ACGAGAAGAAAGCTAG