Gchil2371.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2371.t1
Unique NameGchil2371.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:188397..189098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708635.1
PFAMsHMG_box,SNF5
Max annot lvl2759|Eukaryota
KEGG koko:K09530,ko:K11648,ko:K12662
KEGG Pathwayko03040,ko04141,ko04714,ko05225,map03040,map04141,map04714,map05225
KEGG ModuleM00354
GOsGO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006333,GO:0006337,GO:0006338,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016043,GO:0019219,GO:0019222,GO:0022411,GO:0031323,GO:0031326,GO:0031498,GO:0032984,GO:0032986,GO:0033554,GO:0034641,GO:0034728,GO:0043044,GO:0043170,GO:0043933,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:1901360,GO:1903506,GO:2000112,GO:2001141
Evalue1.55e-38
EggNOG OGsKOG1649@1|root,KOG1649@2759|Eukaryota
Descriptionchromatin disassembly
COG categoryK
BRITEko00000,ko00001,ko00002,ko01009,ko03021,ko03036,ko03041,ko03110,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2371Gchil2371Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 188397..189098 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2371.t1.stop1Gchil2371.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 188397..188399 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2371.t1.CDS1Gchil2371.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 188397..189098 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2371.t1.exon1Gchil2371.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 188397..189098 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2371.t1.start1Gchil2371.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 189096..189098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2371.t1Gchil2371.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 188397..189098 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2371.t1 ID=Gchil2371.t1|Name=Gchil2371.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=234bp
MPSADSNARKRERASPRGPSDALVPIRLDLTFDNHRIQETLTWNLLESQI
TPLTFATILADDLNLPDSARDTISEAIKEQIASFVPPKQPQTECRHVVRL
DIRVGRIVIRDQFEWDLSAHQNSPEAFAERLCADLGLNSEHVPPVAHAIR
EQLLELAKFQDKRQKCAVLHEKDVVRSGVQGWEPEVECLSVEEQERLERK
ERREARLMRRNRGKAEVYGRPMSRRRSTSSRRR*
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spliced messenger RNA

>Gchil2371.t1 ID=Gchil2371.t1|Name=Gchil2371.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00004400_pilon:188397..189098- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATCCGCCGACAGTAACGCAAGAAAGCGAGAGCGCGCTTCTCCGCG
CGGTCCGTCAGACGCCCTCGTTCCCATCCGTCTCGACCTAACCTTCGACA
ACCATCGCATCCAAGAAACGCTCACCTGGAATCTGCTTGAGTCCCAAATC
ACGCCGCTGACCTTTGCAACAATCCTAGCGGACGATTTGAATCTACCTGA
TTCCGCCAGAGACACAATCAGCGAAGCGATAAAGGAACAAATCGCGTCAT
TTGTGCCGCCGAAACAGCCGCAAACAGAGTGTCGACATGTGGTGCGTCTT
GACATTCGCGTCGGCCGAATCGTCATTCGAGACCAGTTTGAGTGGGACCT
GTCCGCACATCAGAACAGCCCAGAAGCGTTTGCGGAGCGACTCTGTGCCG
ACCTCGGGCTGAATAGTGAACATGTTCCGCCCGTTGCGCACGCGATTCGC
GAACAGTTGTTGGAGCTTGCCAAGTTTCAGGACAAGCGACAAAAATGTGC
GGTGCTTCATGAGAAGGACGTGGTGCGAAGTGGCGTGCAAGGCTGGGAAC
CTGAGGTCGAGTGTCTTTCTGTGGAGGAACAGGAGCGACTTGAGAGAAAG
GAACGGCGGGAAGCGCGGTTGATGAGGCGTAATCGGGGAAAGGCCGAGGT
TTATGGCAGGCCGATGAGTCGACGACGATCAACTTCTTCCAGACGACGAT
AG
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protein sequence of Gchil2371.t1

>Gchil2371.t1 ID=Gchil2371.t1|Name=Gchil2371.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=234bp
MPSADSNARKRERASPRGPSDALVPIRLDLTFDNHRIQETLTWNLLESQI
TPLTFATILADDLNLPDSARDTISEAIKEQIASFVPPKQPQTECRHVVRL
DIRVGRIVIRDQFEWDLSAHQNSPEAFAERLCADLGLNSEHVPPVAHAIR
EQLLELAKFQDKRQKCAVLHEKDVVRSGVQGWEPEVECLSVEEQERLERK
ERREARLMRRNRGKAEVYGRPMSRRRSTSSRRR*
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mRNA from alignment at tig00004400_pilon:188397..189098-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2371.t1 ID=Gchil2371.t1|Name=Gchil2371.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00004400_pilon:188397..189098- (Gracilaria chilensis NLEC103_M9 male)
ATGCCATCCGCCGACAGTAACGCAAGAAAGCGAGAGCGCGCTTCTCCGCG
CGGTCCGTCAGACGCCCTCGTTCCCATCCGTCTCGACCTAACCTTCGACA
ACCATCGCATCCAAGAAACGCTCACCTGGAATCTGCTTGAGTCCCAAATC
ACGCCGCTGACCTTTGCAACAATCCTAGCGGACGATTTGAATCTACCTGA
TTCCGCCAGAGACACAATCAGCGAAGCGATAAAGGAACAAATCGCGTCAT
TTGTGCCGCCGAAACAGCCGCAAACAGAGTGTCGACATGTGGTGCGTCTT
GACATTCGCGTCGGCCGAATCGTCATTCGAGACCAGTTTGAGTGGGACCT
GTCCGCACATCAGAACAGCCCAGAAGCGTTTGCGGAGCGACTCTGTGCCG
ACCTCGGGCTGAATAGTGAACATGTTCCGCCCGTTGCGCACGCGATTCGC
GAACAGTTGTTGGAGCTTGCCAAGTTTCAGGACAAGCGACAAAAATGTGC
GGTGCTTCATGAGAAGGACGTGGTGCGAAGTGGCGTGCAAGGCTGGGAAC
CTGAGGTCGAGTGTCTTTCTGTGGAGGAACAGGAGCGACTTGAGAGAAAG
GAACGGCGGGAAGCGCGGTTGATGAGGCGTAATCGGGGAAAGGCCGAGGT
TTATGGCAGGCCGATGAGTCGACGACGATCAACTTCTTCCAGACGACGAT
AG
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Coding sequence (CDS) from alignment at tig00004400_pilon:188397..189098-

>Gchil2371.t1 ID=Gchil2371.t1|Name=Gchil2371.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=702bp|location=Sequence derived from alignment at tig00004400_pilon:188397..189098- (Gracilaria chilensis NLEC103_M9 male)
ATGCCATCCGCCGACAGTAACGCAAGAAAGCGAGAGCGCGCTTCTCCGCG
CGGTCCGTCAGACGCCCTCGTTCCCATCCGTCTCGACCTAACCTTCGACA
ACCATCGCATCCAAGAAACGCTCACCTGGAATCTGCTTGAGTCCCAAATC
ACGCCGCTGACCTTTGCAACAATCCTAGCGGACGATTTGAATCTACCTGA
TTCCGCCAGAGACACAATCAGCGAAGCGATAAAGGAACAAATCGCGTCAT
TTGTGCCGCCGAAACAGCCGCAAACAGAGTGTCGACATGTGGTGCGTCTT
GACATTCGCGTCGGCCGAATCGTCATTCGAGACCAGTTTGAGTGGGACCT
GTCCGCACATCAGAACAGCCCAGAAGCGTTTGCGGAGCGACTCTGTGCCG
ACCTCGGGCTGAATAGTGAACATGTTCCGCCCGTTGCGCACGCGATTCGC
GAACAGTTGTTGGAGCTTGCCAAGTTTCAGGACAAGCGACAAAAATGTGC
GGTGCTTCATGAGAAGGACGTGGTGCGAAGTGGCGTGCAAGGCTGGGAAC
CTGAGGTCGAGTGTCTTTCTGTGGAGGAACAGGAGCGACTTGAGAGAAAG
GAACGGCGGGAAGCGCGGTTGATGAGGCGTAATCGGGGAAAGGCCGAGGT
TTATGGCAGGCCGATGAGTCGACGACGATCAACTTCTTCCAGACGACGAT
AG
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