Gchil2371.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil2371.t1
Unique NameGchil2371.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length234
Homology
BLAST of Gchil2371.t1 vs. uniprot
Match: A0A2V3IV60_9FLOR (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IV60_9FLOR)

HSP 1 Score: 347 bits (889), Expect = 8.240e-119
Identity = 183/235 (77.87%), Postives = 205/235 (87.23%), Query Frame = 0
Query:    1 MPSADSNARKRERAS-PRGPSDALVPIRLDLTFDNHRIQETLTWNLLESQITPLTFATILADDLNLPDSARDTISEAIKEQIASFVPPKQPQTECRHVVRLDIRVGRIVIRDQFEWDLSAHQNSPEAFAERLCADLGLNSEHVPPVAHAIREQLLELAKFQDKRQKCAVLHEKDVVR-SGVQGWEPEVECLSVEEQERLERKERREARLMRRNRGKAEVYGRPMSRRRSTSSRRR 233
            M S  +N +KRER +     SDAL+PIRLDLTFDN R+QETLTWNLLE+QITPLTFA+ILA DL+LPDSARD+I+E IKEQI ++VP + PQ ECRHVVRLD+RVGRIVIRDQFEWDLS+ +NSPEAFAE LCADLGLN+EHVP VAHAIREQLLELA+FQDKRQ+C VLHE DV+R  GV+ WEP VECL+VEEQERLERKERREARLMRRNRGKAEVY  P SRRRS SSRRR
Sbjct:    1 MVSNAANPKKRERPTVASASSDALIPIRLDLTFDNRRVQETLTWNLLETQITPLTFASILAADLSLPDSARDSIAETIKEQIEAYVPLRLPQKECRHVVRLDLRVGRIVIRDQFEWDLSSSENSPEAFAEALCADLGLNTEHVPHVAHAIREQLLELAEFQDKRQRCPVLHENDVIRIQGVEAWEPGVECLTVEEQERLERKERREARLMRRNRGKAEVYAFPKSRRRSISSRRR 235          
BLAST of Gchil2371.t1 vs. uniprot
Match: R7QTW3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTW3_CHOCR)

HSP 1 Score: 263 bits (671), Expect = 1.990e-85
Identity = 144/235 (61.28%), Postives = 173/235 (73.62%), Query Frame = 0
Query:    7 NARKRERASPRGP--------SDALVPIRLDLTFDNHRIQETLTWNLLESQITPLTFATILADDLNLPDSARDTISEAIKEQIASFVPP-KQPQTECRHVVRLDIRVGRIVIRDQFEWDLSAHQNSPEAFAERLCADLGLNSEHVPPVAHAIREQLLELAKFQDKRQKCAVLHEKDVVRSGVQ--GWEPEVECLSVEEQERLERKERREARLMRRNRGKAEVYGRPMSRRRSTSS 230
            ++ KR R S  G         ++ LVPIRLDL  D  R+QE+ TWNL E  +TP +FA  LA DL L DS RD I++A++EQI++FVPP    + ECRHVV LD+R+GRIVIRDQFEWDL   QNSPEAFAERLCADLGLN EHV  VAHAIREQL+EL +F+DKRQ+C+VL E DVVR   +   WEP V CL++EEQER+ERKE+REARL RRNRGKAE   R   RRRS+ +
Sbjct:    9 SSSKRSRTSVEGEDVRNAGPQTEPLVPIRLDLNLDGRRVQESFTWNLREKHMTPKSFAAQLAYDLGLADSGRDEIADAMQEQISAFVPPPSSTKGECRHVVHLDLRIGRIVIRDQFEWDLHEPQNSPEAFAERLCADLGLNFEHVAAVAHAIREQLVELGEFRDKRQRCSVLTEGDVVRPVEELIRWEPAVTCLTLEEQERIERKEKREARLQRRNRGKAETNWRTPGRRRSSDN 243          
BLAST of Gchil2371.t1 vs. uniprot
Match: M2X6H3_GALSU (SWI/SNF-related matrix-associated actin-dependent regulator ofchromatin subfamily B member 1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X6H3_GALSU)

HSP 1 Score: 144 bits (362), Expect = 6.380e-38
Identity = 78/168 (46.43%), Postives = 110/168 (65.48%), Query Frame = 0
Query:   55 FATILADDLNLPDSARDTISEAIKEQIASFVPPKQPQTEC---RHVVRLDIRVGRIVIRDQFEWDLSAHQNSPEAFAERLCADLGLNSEHVPPVAHAIREQLLELAKFQDKRQKCAVLHEKDVVRSG--VQGWEPEVECLSVEEQERLERKERREARLMRRNRGKAEV 217
            FA  +  D +LP SA + I  +I+EQ+A ++P + P+ E    RH+++LDIR+G++V+RDQFEWD S   NSPE FAE LC DLGL  E VP VAHAIREQL ELA+    R     +    + R    +  W+P VE L+ ++ E+LER+E R+AR+ RRN+G+  +
Sbjct:    4 FARTVVVDTSLPHSAEELIVSSIREQVAGYIPYRSPEEEIGERRHILKLDIRIGKVVLRDQFEWDRSNADNSPEEFAETLCKDLGLTREFVPAVAHAIREQLQELAEHPYTRCLQGSVPASGIYRKPETLSQWQPVVEILTDDQLEKLERRETRDARVARRNKGRESI 171          
BLAST of Gchil2371.t1 vs. uniprot
Match: UPI00138FC527 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A-like isoform X1 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FC527)

HSP 1 Score: 133 bits (335), Expect = 2.150e-33
Identity = 90/211 (42.65%), Postives = 122/211 (57.82%), Query Frame = 0
Query:   21 DALVPIRLDLTFDNHRIQETLTWNLLESQITPLTFATILADDLNLPDSAR-DTISEAIKEQIASF-VPPKQPQTEC---RHVVRLDIRVGRIVIRDQFEWDLSAHQNSPEAFAERLCADLGLNSEHVPPVAHAIREQLLELAKFQDKRQKCAVLHEKDV------VRSG--VQGWEPEVECLSVEEQERLERKERREARLMRRNRGKAEVY 218
            + LVPIRLD+  +  ++++T TWN  E+QI P TFA +L DDL+LP S+    I++AI++Q+  + V P+   TE    R +++L+I VG I + DQFEWDLS  QNSPE FA  LC+DLGL  E V  VA++IR QL          QK     E  +      VRSG  +  W P +E L+  E E+  R + R  R MRR    A VY
Sbjct:  197 EVLVPIRLDVDIEGQKLRDTFTWNKNETQIAPETFAEVLCDDLDLPPSSFVPAIAQAIRQQVKQYDVEPEIALTEQKDQRIIIKLNIHVGNISLVDQFEWDLSEPQNSPEQFALSLCSDLGLGGEFVTAVAYSIRGQL-------SWHQKTYAFSEAPLPKVDNPVRSGPDIDNWGPYLETLTDAEMEKKLRDQDRNTRRMRRLANTAPVY 400          
BLAST of Gchil2371.t1 vs. uniprot
Match: T1KTV9_TETUR (Uncharacterized protein n=3 Tax=Tetranychus urticae TaxID=32264 RepID=T1KTV9_TETUR)

HSP 1 Score: 130 bits (327), Expect = 1.780e-32
Identity = 68/136 (50.00%), Postives = 94/136 (69.12%), Query Frame = 0
Query:   21 DALVPIRLDLTFDNHRIQETLTWNLLESQITPLTFATILADDLNLPDSAR-DTISEAIKEQIASFVPPK--QPQTECRHVVRLDIRVGRIVIRDQFEWDLSAHQNSPEAFAERLCADLGLNSEHVPPVAHAIREQL 153
            D LVPIRLD+  D H++++T TWN  E  +TP  FA +L DDL+LP SA    I+++I++QI SF      + QT+ R +++L+I VG I + DQFEWD+S  +NSPE FA RLCA+LGL  E V  +A++IR QL
Sbjct:  167 DFLVPIRLDMEIDGHKLRDTFTWNKNEQLVTPEQFAEVLCDDLDLPASAFVPAIAQSIRQQIESFQTDTLLEEQTDQRVILKLNIHVGNISLVDQFEWDMSEKENSPEEFALRLCAELGLGGEFVTAIAYSIRGQL 302          
BLAST of Gchil2371.t1 vs. uniprot
Match: A0A0C9R2F0_AMBAM (Putative swi-snf chromatin remodeling complex snf5 subunit (Fragment) n=1 Tax=Amblyomma americanum TaxID=6943 RepID=A0A0C9R2F0_AMBAM)

HSP 1 Score: 129 bits (323), Expect = 2.690e-32
Identity = 67/136 (49.26%), Postives = 95/136 (69.85%), Query Frame = 0
Query:   21 DALVPIRLDLTFDNHRIQETLTWNLLESQITPLTFATILADDLNLPDSARDT-ISEAIKEQIASFVPPK--QPQTECRHVVRLDIRVGRIVIRDQFEWDLSAHQNSPEAFAERLCADLGLNSEHVPPVAHAIREQL 153
            + LVPIRLD+  + H++++T TWN  ESQITP  FA IL DDL+LP  +  T IS++I++QI +F        QT+ R +++L+I VG I + DQFEWD+S  +NSPE FA +LC++LGL  E V  +A++IR QL
Sbjct:  119 EVLVPIRLDMEIEGHKLRDTFTWNKNESQITPEQFAEILCDDLDLPPLSFVTAISQSIRQQIDAFPTDNLLDDQTDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEQFALKLCSELGLGGEFVTAIAYSIRGQL 254          
BLAST of Gchil2371.t1 vs. uniprot
Match: A0A7R8ZPZ1_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8ZPZ1_9CRUS)

HSP 1 Score: 129 bits (324), Expect = 4.960e-32
Identity = 84/205 (40.98%), Postives = 116/205 (56.59%), Query Frame = 0
Query:   10 KRERASPRGPSDALVPIRLDLTFDNHRIQETLTWNLLESQITPLTFATILADDLNL-PDSARDTISEAIKEQIASFVPPK--QPQTECRHVVRLDIRVGRIVIRDQFEWDLSAHQNSPEAFAERLCADLGLNSEHVPPVAHAIREQLL-ELAKFQDKRQKCAVLHEKDVVRSGVQGWEPEVECLSVEEQERLERKERREARLMRR 210
            +RE AS     + LVPIRLD+  D  ++++T TWN  ES ITP  FA +L DDL+L P      I+ +IK+Q+  F        QT+ R V+RL+I VG I + DQFEWDL+  QNSPE FA +LCA+LGL  + V  +A++IR QL   L  +     +   +      +S    W P +E L+  E E+  R + R  R MRR
Sbjct:  160 QRENASM---PEQLVPIRLDMEIDGQKLRDTFTWNRNESLITPEMFAEVLCDDLDLNPMQFVPAIATSIKQQVEQFPTDTLLDEQTDQRVVIRLNIHVGNISLVDQFEWDLAEQQNSPEDFAVKLCAELGLGGDFVTAIAYSIRGQLAWHLRTYAFSENQLGPVDTPFRSQSEADSWTPFLETLTDAEMEKKIRDQDRNTRRMRR 361          
BLAST of Gchil2371.t1 vs. uniprot
Match: M1VIN6_CYAM1 (Similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VIN6_CYAM1)

HSP 1 Score: 128 bits (321), Expect = 8.530e-32
Identity = 77/204 (37.75%), Postives = 120/204 (58.82%), Query Frame = 0
Query:   21 DALVPIRLDLTFDNHRIQETLTWNLLESQITPLTFATILADDLNLPDSARDTISEAIKEQIASFVPPKQP----QTECRHVVRLDIRVGRIVIRDQFEWDLSAHQNSPEAFAERLCADLGLNSEHVPPVAHAIREQLLELAKFQDKRQKCAV--LHEKDVVRSGVQGWE---PEVECLSVEEQERLERKERREARLMRRNRGKA 215
            + L+PIR+D+ +++ R+ +   WN  E ++TP TFA  L  DL  P    + ++ AI+EQI  + P +      ++E R +  LD+R+G I ++D FEWD  + ++ PE F+  LC +LGL +E    +AHAIREQL ++       QK  +  +H +  +R G + WE   P V  LS EE E +ER+E R AR MRR++ K+
Sbjct:   27 EPLIPIRIDVQWNDARVVDAFLWNQYEERLTPETFAPHLLRDLQQPMELANGVASAIREQIEQYSPFEHELFADRSELRLLFTLDVRIGNIQLQDTFEWDALSFESDPEQFSRMLCRELGLGTEFSTAIAHAIREQLQDVWAGVAYSQKSILESVHPRITIRDG-EDWELPGPAVRVLSKEELEEVERREDRSARAMRRSQRKS 229          
BLAST of Gchil2371.t1 vs. uniprot
Match: B7PU73_IXOSC (SWI-SNF chromatin remodeling complex, SNF5 subunit, putative n=1 Tax=Ixodes scapularis TaxID=6945 RepID=B7PU73_IXOSC)

HSP 1 Score: 128 bits (321), Expect = 8.690e-32
Identity = 67/136 (49.26%), Postives = 93/136 (68.38%), Query Frame = 0
Query:   21 DALVPIRLDLTFDNHRIQETLTWNLLESQITPLTFATILADDLNLPD-SARDTISEAIKEQIASFVPPK--QPQTECRHVVRLDIRVGRIVIRDQFEWDLSAHQNSPEAFAERLCADLGLNSEHVPPVAHAIREQL 153
            + LVPIRLD+  + H++++T TWN  ESQITP  FA IL DDL+LP  S    IS++I+ QI +F        QT+ R +++L+I VG I + DQFEWD+S  +NSPE FA +LC++LGL  E V  +A++IR QL
Sbjct:  146 EVLVPIRLDMEIEGHKLRDTFTWNKNESQITPEQFAEILCDDLDLPPLSFVPAISQSIRTQIEAFPTDNLLDDQTDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEQFALKLCSELGLGGEFVTAIAYSIRGQL 281          
BLAST of Gchil2371.t1 vs. uniprot
Match: A0A4Z2BL62_9TELE (Uncharacterized protein n=1 Tax=Takifugu bimaculatus TaxID=433685 RepID=A0A4Z2BL62_9TELE)

HSP 1 Score: 125 bits (315), Expect = 1.900e-31
Identity = 78/194 (40.21%), Postives = 116/194 (59.79%), Query Frame = 0
Query:   21 DALVPIRLDLTFDNHRIQETLTWNLLESQITPLTFATILADDLNL-PDSARDTISEAIKEQIASFVPPK--QPQTECRHVVRLDIRVGRIVIRDQFEWDLSAHQNSPEAFAERLCADLGLNSEHVPPVAHAIREQLLELAKFQDKRQKCAVLHEKDVVRSG-VQGWEPEVECLSVEEQERLERKERREARLMRR 210
            +ALVPIRLD+  D  ++++T TWN+ E  +TP  FA IL DDL+L P +    I+ AI++QI S+      + QT+ R +++L+I VG I + DQFEWD+S  +NSPE+FA +LC++LGL  E V  +A++IR QL    +     +      E  +  +G    W P +E L+  E E+  R + R  R MRR
Sbjct:   84 EALVPIRLDMEIDGQKLRDTFTWNMNEKLMTPEMFAEILCDDLDLSPLAFVPAIASAIRQQIESYPTDTILEEQTDQRVIIKLNIHVGNISLMDQFEWDMSERENSPESFALKLCSELGLGGEFVTTIAYSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRR 277          
The following BLAST results are available for this feature:
BLAST of Gchil2371.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IV60_9FLOR8.240e-11977.87SWI/SNF-related matrix-associated actin-dependent ... [more]
R7QTW3_CHOCR1.990e-8561.28Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
M2X6H3_GALSU6.380e-3846.43SWI/SNF-related matrix-associated actin-dependent ... [more]
UPI00138FC5272.150e-3342.65SWI/SNF-related matrix-associated actin-dependent ... [more]
T1KTV9_TETUR1.780e-3250.00Uncharacterized protein n=3 Tax=Tetranychus urtica... [more]
A0A0C9R2F0_AMBAM2.690e-3249.26Putative swi-snf chromatin remodeling complex snf5... [more]
A0A7R8ZPZ1_9CRUS4.960e-3240.98Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
M1VIN6_CYAM18.530e-3237.75Similar to SWI/SNF related, matrix associated, act... [more]
B7PU73_IXOSC8.690e-3249.26SWI-SNF chromatin remodeling complex, SNF5 subunit... [more]
A0A4Z2BL62_9TELE1.900e-3140.21Uncharacterized protein n=1 Tax=Takifugu bimaculat... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 190..211
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..221
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..233
NoneNo IPR availablePANTHERPTHR10019SNF5coord: 20..214
NoneNo IPR availablePANTHERPTHR10019:SF5SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY B MEMBER 1coord: 20..214
IPR006939SNF5/SMARCB1/INI1PFAMPF04855SNF5coord: 89..206
e-value: 1.9E-28
score: 99.8
coord: 21..84
e-value: 1.3E-16
score: 61.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:188397..189098 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2371.t1Gchil2371.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004400_pilon 188397..189098 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil2371.t1 ID=Gchil2371.t1|Name=Gchil2371.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=234bp
MPSADSNARKRERASPRGPSDALVPIRLDLTFDNHRIQETLTWNLLESQI
TPLTFATILADDLNLPDSARDTISEAIKEQIASFVPPKQPQTECRHVVRL
DIRVGRIVIRDQFEWDLSAHQNSPEAFAERLCADLGLNSEHVPPVAHAIR
EQLLELAKFQDKRQKCAVLHEKDVVRSGVQGWEPEVECLSVEEQERLERK
ERREARLMRRNRGKAEVYGRPMSRRRSTSSRRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006939SNF5