Gchil2539.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2539.t1
Unique NameGchil2539.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length302
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1545734..1546639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S14_321V6.1
PFAMsLCM
Max annot lvl35493|Streptophyta
KEGG rclassRC00003,RC00460,RC00745
KEGG koko:K15451
KEGG ReactionR10586,R10587
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009966,GO:0009968,GO:0010646,GO:0010648,GO:0016740,GO:0016741,GO:0023051,GO:0023057,GO:0032259,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0065007,GO:1900457,GO:1900458
Evalue1.06e-29
EggNOG OGsKOG2918@1|root,KOG2918@2759|Eukaryota,37Q19@33090|Viridiplantae,3GDYW@35493|Streptophyta
EC2.1.1.290,2.3.1.231
Descriptionleucine carboxyl methyltransferase
COG categoryO
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2539Gchil2539Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1545734..1546639 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2539.t1.stop1Gchil2539.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1545734..1545736 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2539.t1.CDS1Gchil2539.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1545734..1546639 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2539.t1.exon1Gchil2539.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1545734..1546639 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2539.t1.start1Gchil2539.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1546637..1546639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2539.t1Gchil2539.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1545734..1546639 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2539.t1 ID=Gchil2539.t1|Name=Gchil2539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=302bp
MKDFFGNINREEDVYNLSPISNRNTYVRVLLKKVLICNFLNNFKDQLVQV
ISLGSGLDTFPFQLFTEFQSLPPIRYVELDLPSSVEKKRFLAQEVFQDDT
VFHQREFGTSCCSAWRTDENTLQKSYYHLQSCDLRDLKQVKASLSKTSVD
FSKPTIIFAEIVLVYLDPTHSDDVIRFFAEMFQGPSCFLDIDHVITEEEF
GAGMMRTFAKLQLPLLGLQKYPSIESQSKRFVDLSWDHCRGYTMYNWLQK
QMSKEDIQKLDEIERLDDKKRSKQILSHYGVLCAEKGFTITESFFAHTEL
E*
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spliced messenger RNA

>Gchil2539.t1 ID=Gchil2539.t1|Name=Gchil2539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=906bp|location=Sequence derived from alignment at tig00004400_pilon:1545734..1546639- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGATTTCTTTGGGAACATTAATCGCGAAGAAGACGTTTACAATTT
GTCTCCAATAAGTAATCGAAATACCTATGTCCGCGTGCTTCTGAAGAAGG
TTCTGATTTGTAATTTCTTAAACAACTTCAAAGATCAATTGGTACAAGTT
ATTTCTCTTGGATCCGGCTTGGATACATTCCCTTTCCAGCTGTTCACCGA
GTTCCAGTCACTCCCGCCTATTCGATATGTTGAACTTGATCTTCCGTCTT
CTGTGGAAAAGAAACGATTCCTCGCACAAGAAGTTTTCCAAGATGATACC
GTCTTTCACCAAAGAGAATTTGGAACATCTTGTTGTAGTGCTTGGAGAAC
AGATGAAAACACTCTGCAAAAATCTTATTATCATCTTCAGTCCTGCGACC
TTCGCGATCTCAAACAAGTAAAAGCCTCGTTGTCGAAGACCAGTGTGGAT
TTCTCGAAACCGACTATCATTTTTGCCGAGATTGTTCTGGTCTACTTGGA
TCCAACACATTCCGATGATGTTATCAGGTTTTTCGCAGAAATGTTTCAGG
GACCGTCTTGCTTTCTCGACATTGATCATGTGATTACAGAGGAAGAATTT
GGTGCTGGCATGATGAGAACCTTTGCGAAGCTACAGCTTCCGCTTTTGGG
ACTACAAAAATATCCCTCCATTGAATCGCAATCAAAGAGATTCGTGGACT
TGAGTTGGGATCATTGTCGTGGTTACACCATGTACAACTGGCTTCAAAAA
CAAATGAGCAAAGAAGATATACAGAAATTGGATGAAATTGAAAGGCTAGA
TGATAAAAAGCGATCAAAACAAATTCTTTCACACTATGGGGTATTGTGTG
CAGAGAAAGGATTTACAATCACGGAGAGTTTCTTCGCTCATACAGAATTG
GAGTGA
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protein sequence of Gchil2539.t1

>Gchil2539.t1 ID=Gchil2539.t1|Name=Gchil2539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=302bp
MKDFFGNINREEDVYNLSPISNRNTYVRVLLKKVLICNFLNNFKDQLVQV
ISLGSGLDTFPFQLFTEFQSLPPIRYVELDLPSSVEKKRFLAQEVFQDDT
VFHQREFGTSCCSAWRTDENTLQKSYYHLQSCDLRDLKQVKASLSKTSVD
FSKPTIIFAEIVLVYLDPTHSDDVIRFFAEMFQGPSCFLDIDHVITEEEF
GAGMMRTFAKLQLPLLGLQKYPSIESQSKRFVDLSWDHCRGYTMYNWLQK
QMSKEDIQKLDEIERLDDKKRSKQILSHYGVLCAEKGFTITESFFAHTEL
E*
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mRNA from alignment at tig00004400_pilon:1545734..1546639-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2539.t1 ID=Gchil2539.t1|Name=Gchil2539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=906bp|location=Sequence derived from alignment at tig00004400_pilon:1545734..1546639- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGATTTCTTTGGGAACATTAATCGCGAAGAAGACGTTTACAATTT
GTCTCCAATAAGTAATCGAAATACCTATGTCCGCGTGCTTCTGAAGAAGG
TTCTGATTTGTAATTTCTTAAACAACTTCAAAGATCAATTGGTACAAGTT
ATTTCTCTTGGATCCGGCTTGGATACATTCCCTTTCCAGCTGTTCACCGA
GTTCCAGTCACTCCCGCCTATTCGATATGTTGAACTTGATCTTCCGTCTT
CTGTGGAAAAGAAACGATTCCTCGCACAAGAAGTTTTCCAAGATGATACC
GTCTTTCACCAAAGAGAATTTGGAACATCTTGTTGTAGTGCTTGGAGAAC
AGATGAAAACACTCTGCAAAAATCTTATTATCATCTTCAGTCCTGCGACC
TTCGCGATCTCAAACAAGTAAAAGCCTCGTTGTCGAAGACCAGTGTGGAT
TTCTCGAAACCGACTATCATTTTTGCCGAGATTGTTCTGGTCTACTTGGA
TCCAACACATTCCGATGATGTTATCAGGTTTTTCGCAGAAATGTTTCAGG
GACCGTCTTGCTTTCTCGACATTGATCATGTGATTACAGAGGAAGAATTT
GGTGCTGGCATGATGAGAACCTTTGCGAAGCTACAGCTTCCGCTTTTGGG
ACTACAAAAATATCCCTCCATTGAATCGCAATCAAAGAGATTCGTGGACT
TGAGTTGGGATCATTGTCGTGGTTACACCATGTACAACTGGCTTCAAAAA
CAAATGAGCAAAGAAGATATACAGAAATTGGATGAAATTGAAAGGCTAGA
TGATAAAAAGCGATCAAAACAAATTCTTTCACACTATGGGGTATTGTGTG
CAGAGAAAGGATTTACAATCACGGAGAGTTTCTTCGCTCATACAGAATTG
GAGTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1545734..1546639-

>Gchil2539.t1 ID=Gchil2539.t1|Name=Gchil2539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=906bp|location=Sequence derived from alignment at tig00004400_pilon:1545734..1546639- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGATTTCTTTGGGAACATTAATCGCGAAGAAGACGTTTACAATTT
GTCTCCAATAAGTAATCGAAATACCTATGTCCGCGTGCTTCTGAAGAAGG
TTCTGATTTGTAATTTCTTAAACAACTTCAAAGATCAATTGGTACAAGTT
ATTTCTCTTGGATCCGGCTTGGATACATTCCCTTTCCAGCTGTTCACCGA
GTTCCAGTCACTCCCGCCTATTCGATATGTTGAACTTGATCTTCCGTCTT
CTGTGGAAAAGAAACGATTCCTCGCACAAGAAGTTTTCCAAGATGATACC
GTCTTTCACCAAAGAGAATTTGGAACATCTTGTTGTAGTGCTTGGAGAAC
AGATGAAAACACTCTGCAAAAATCTTATTATCATCTTCAGTCCTGCGACC
TTCGCGATCTCAAACAAGTAAAAGCCTCGTTGTCGAAGACCAGTGTGGAT
TTCTCGAAACCGACTATCATTTTTGCCGAGATTGTTCTGGTCTACTTGGA
TCCAACACATTCCGATGATGTTATCAGGTTTTTCGCAGAAATGTTTCAGG
GACCGTCTTGCTTTCTCGACATTGATCATGTGATTACAGAGGAAGAATTT
GGTGCTGGCATGATGAGAACCTTTGCGAAGCTACAGCTTCCGCTTTTGGG
ACTACAAAAATATCCCTCCATTGAATCGCAATCAAAGAGATTCGTGGACT
TGAGTTGGGATCATTGTCGTGGTTACACCATGTACAACTGGCTTCAAAAA
CAAATGAGCAAAGAAGATATACAGAAATTGGATGAAATTGAAAGGCTAGA
TGATAAAAAGCGATCAAAACAAATTCTTTCACACTATGGGGTATTGTGTG
CAGAGAAAGGATTTACAATCACGGAGAGTTTCTTCGCTCATACAGAATTG
GAGTGA
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