Gchil2598.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2598.t1
Unique Name	Gchil2598.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	571

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:1774060..1775772 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707524.1
Preferred name	EIN2
PFAMs	Nramp
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03322,ko:K14513,ko:K21398
KEGG TC	2.A.55,2.A.55.2.1,2.A.55.2.2,2.A.55.2.6,2.A.55.3
KEGG Pathway	ko04016,ko04075,ko04142,ko04216,ko04978,map04016,map04075,map04142,map04216,map04978
GOs	GO:0000041,GO:0000160,GO:0000331,GO:0001736,GO:0001738,GO:0002009,GO:0002237,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005215,GO:0005381,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006950,GO:0006952,GO:0006955,GO:0006970,GO:0007154,GO:0007164,GO:0007165,GO:0007275,GO:0007568,GO:0008150,GO:0008324,GO:0009266,GO:0009267,GO:0009408,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009620,GO:0009628,GO:0009651,GO:0009653,GO:0009719,GO:0009723,GO:0009725,GO:0009743,GO:0009755,GO:0009756,GO:0009787,GO:0009789,GO:0009814,GO:0009861,GO:0009871,GO:0009873,GO:0009888,GO:0009914,GO:0009926,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010015,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010053,GO:0010054,GO:0010087,GO:0010104,GO:0010119,GO:0010150,GO:0010182,GO:0010646,GO:0010647,GO:0010817,GO:0015075,GO:0015093,GO:0015318,GO:0015684,GO:0016020,GO:0016043,GO:0021700,GO:0022622,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030154,GO:0030587,GO:0031090,GO:0031152,GO:0031164,GO:0031347,GO:0031348,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032501,GO:0032502,GO:0032870,GO:0033036,GO:0033037,GO:0033554,GO:0034220,GO:0034755,GO:0035556,GO:0042221,GO:0042545,GO:0042592,GO:0042594,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044764,GO:0045087,GO:0045229,GO:0046873,GO:0046915,GO:0048364,GO:0048366,GO:0048367,GO:0048468,GO:0048469,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048585,GO:0048729,GO:0048731,GO:0048764,GO:0048765,GO:0048827,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050832,GO:0050896,GO:0051179,GO:0051234,GO:0051301,GO:0051641,GO:0051703,GO:0051704,GO:0051707,GO:0051716,GO:0052386,GO:0052482,GO:0052542,GO:0052543,GO:0052544,GO:0052545,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055085,GO:0060429,GO:0060918,GO:0065007,GO:0065008,GO:0070297,GO:0070727,GO:0070838,GO:0070839,GO:0070887,GO:0071241,GO:0071248,GO:0071281,GO:0071310,GO:0071322,GO:0071369,GO:0071495,GO:0071496,GO:0071554,GO:0071555,GO:0071695,GO:0071840,GO:0072509,GO:0072511,GO:0080134,GO:0090558,GO:0090627,GO:0090693,GO:0090702,GO:0097159,GO:0097708,GO:0098542,GO:0098588,GO:0098630,GO:0098655,GO:0098660,GO:0098662,GO:0098743,GO:0098771,GO:0098805,GO:0099120,GO:0099402,GO:0140115,GO:1901363,GO:1901419,GO:1901421,GO:1901700,GO:1901701,GO:1902531,GO:1903414,GO:1903874,GO:1903988,GO:1905392,GO:1905957,GO:1905959
Evalue	2.35e-185
EggNOG OGs	COG1914@1\|root,KOG1291@2759\|Eukaryota
Description	transition metal ion homeostasis
COG category	P
BRITE	ko00000,ko00001,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2598	Gchil2598	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 1774060..1775772 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2598.t1.start1	Gchil2598.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 1774060..1774062 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2598.t1.CDS1	Gchil2598.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 1774060..1775772 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2598.t1.exon1	Gchil2598.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 1774060..1775772 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2598.t1.stop1	Gchil2598.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 1775770..1775772 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2598.t1	Gchil2598.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 1774060..1775772 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:1774060..1775772+
coding sequence from alignment at tig00004400_pilon:1774060..1775772+

mRNA sequence

>Gchil2598.t1 ID=Gchil2598.t1|Name=Gchil2598.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=571bp
MGQQRRDALEVAFGDATQSDEEEFMFRPPDIAPQVSDEDECTARRKFTWK
GVVTHLGPAFLVSIGYLDPGNWATDIEGGSKFGYKLLWVLILANFMALLL
QVLAARMGIVTRAHLAELCRDEYPRYATYALWTMAELAIIATDLTEVLGT
AIGINLLFNLPLMVGVVFTALDTFLLLTAQSQGMRRIEQLIFMFLALISF
CFVLELFMSKPSISGVLGGIFVPRLDTSSLYVATGIVGATVMPHNFYLHS
ALVIERVPDRSRETLESECRYNLIDTAIALNAALFINCAILIIAAANFWT
RGIEVTTLSKAYHLLENTGFKVGKVEVAPLLFGVALIASGQSSTLCGTLA
GQYVMEGFLDLRAPPVIRRLVTRLIAIVPALIVISIMGDSGTYQLLIFCQ
VILSLQLPFAIVPMIRFTNSTRRMDEFKNSKSVSVLAWAAAGITVCLNVA
FVFHSIIQGIKSSHLALRLLSLACVAPIFVALMIFLGWIAFRTETGGSGP
VYRVEDEYEFVSEDGLDLDSMGSPVGSIPTPSPKPVSLQIETGVHPELDE
TIDLYGTDTTSRKRQLQPSQ*

spliced messenger RNA

>Gchil2598.t1 ID=Gchil2598.t1|Name=Gchil2598.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1713bp|location=Sequence derived from alignment at tig00004400_pilon:1774060..1775772+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCAACAACGACGAGATGCCCTCGAGGTAGCCTTCGGAGATGCCAC
CCAAAGCGATGAAGAGGAATTTATGTTCCGACCTCCTGATATTGCTCCAC
AAGTAAGTGATGAAGATGAATGCACAGCTCGCAGAAAGTTCACATGGAAG
GGCGTCGTGACGCACCTGGGGCCGGCCTTTCTCGTATCCATTGGCTACCT
GGATCCCGGCAATTGGGCGACTGATATTGAAGGAGGAAGTAAATTTGGAT
ACAAGTTACTATGGGTTCTCATTCTGGCCAACTTTATGGCTCTCTTGCTG
CAAGTGCTCGCAGCGAGAATGGGCATCGTCACTCGCGCACATCTTGCAGA
ATTATGTCGAGACGAATATCCACGGTACGCGACCTATGCTCTGTGGACAA
TGGCCGAACTTGCTATCATTGCCACAGATCTGACAGAAGTGTTAGGCACC
GCAATTGGCATTAATCTTCTCTTTAACCTACCCCTCATGGTTGGGGTTGT
TTTCACGGCGCTAGACACGTTTCTTTTGTTAACTGCCCAAAGCCAGGGTA
TGAGACGCATAGAGCAATTGATCTTCATGTTTTTGGCCTTGATATCGTTT
TGTTTTGTCTTGGAGCTGTTCATGTCAAAACCCAGTATTTCCGGAGTTCT
TGGTGGAATTTTTGTCCCTCGCCTCGACACTTCAAGTTTGTACGTGGCAA
CTGGTATTGTTGGGGCAACCGTTATGCCACACAACTTCTACCTGCACTCT
GCTTTGGTCATAGAACGTGTTCCTGATCGATCGCGTGAAACGCTGGAGTC
CGAATGCCGGTACAACCTCATTGATACAGCCATAGCTTTAAATGCTGCGT
TATTTATCAACTGTGCCATTCTTATAATTGCAGCGGCCAACTTCTGGACA
AGGGGAATCGAAGTAACTACCCTTTCGAAGGCGTACCATCTCCTCGAAAA
CACAGGCTTTAAAGTCGGAAAGGTGGAAGTAGCCCCCTTGCTGTTTGGGG
TGGCTCTTATTGCTTCAGGGCAAAGCTCGACATTATGCGGAACTCTGGCA
GGCCAGTATGTCATGGAAGGATTTCTCGATCTTCGCGCTCCGCCTGTTAT
TCGTCGCCTTGTAACCCGTCTTATCGCCATTGTTCCAGCTCTTATCGTTA
TCTCCATCATGGGTGATTCAGGAACATACCAACTGCTTATCTTTTGTCAG
GTCATCCTTTCCCTTCAATTACCTTTTGCGATCGTTCCAATGATACGGTT
CACGAACTCAACGAGAAGAATGGATGAGTTCAAGAATTCGAAGTCTGTAT
CTGTGTTAGCATGGGCCGCAGCAGGTATCACAGTTTGCCTTAATGTTGCG
TTTGTGTTCCATTCGATAATCCAGGGCATCAAATCAAGTCATCTGGCATT
GAGGTTGCTCAGTCTGGCTTGCGTGGCACCGATCTTCGTCGCCTTGATGA
TATTTCTCGGATGGATTGCATTTAGAACGGAAACTGGAGGATCGGGTCCA
GTATACAGAGTTGAAGATGAGTATGAATTCGTGTCAGAAGACGGACTCGA
TCTTGATTCAATGGGTTCTCCGGTGGGGAGTATACCGACTCCATCTCCGA
AGCCTGTTTCACTCCAGATCGAAACTGGAGTACATCCAGAACTTGATGAA
ACCATTGACTTATACGGAACGGATACGACGTCAAGAAAACGGCAGTTGCA
ACCCTCCCAATGA

protein sequence of Gchil2598.t1

>Gchil2598.t1 ID=Gchil2598.t1|Name=Gchil2598.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=571bp
MGQQRRDALEVAFGDATQSDEEEFMFRPPDIAPQVSDEDECTARRKFTWK
GVVTHLGPAFLVSIGYLDPGNWATDIEGGSKFGYKLLWVLILANFMALLL
QVLAARMGIVTRAHLAELCRDEYPRYATYALWTMAELAIIATDLTEVLGT
AIGINLLFNLPLMVGVVFTALDTFLLLTAQSQGMRRIEQLIFMFLALISF
CFVLELFMSKPSISGVLGGIFVPRLDTSSLYVATGIVGATVMPHNFYLHS
ALVIERVPDRSRETLESECRYNLIDTAIALNAALFINCAILIIAAANFWT
RGIEVTTLSKAYHLLENTGFKVGKVEVAPLLFGVALIASGQSSTLCGTLA
GQYVMEGFLDLRAPPVIRRLVTRLIAIVPALIVISIMGDSGTYQLLIFCQ
VILSLQLPFAIVPMIRFTNSTRRMDEFKNSKSVSVLAWAAAGITVCLNVA
FVFHSIIQGIKSSHLALRLLSLACVAPIFVALMIFLGWIAFRTETGGSGP
VYRVEDEYEFVSEDGLDLDSMGSPVGSIPTPSPKPVSLQIETGVHPELDE
TIDLYGTDTTSRKRQLQPSQ*

mRNA from alignment at tig00004400_pilon:1774060..1775772+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2598.t1 ID=Gchil2598.t1|Name=Gchil2598.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1713bp|location=Sequence derived from alignment at tig00004400_pilon:1774060..1775772+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCAACAACGACGAGATGCCCTCGAGGTAGCCTTCGGAGATGCCAC
CCAAAGCGATGAAGAGGAATTTATGTTCCGACCTCCTGATATTGCTCCAC
AAGTAAGTGATGAAGATGAATGCACAGCTCGCAGAAAGTTCACATGGAAG
GGCGTCGTGACGCACCTGGGGCCGGCCTTTCTCGTATCCATTGGCTACCT
GGATCCCGGCAATTGGGCGACTGATATTGAAGGAGGAAGTAAATTTGGAT
ACAAGTTACTATGGGTTCTCATTCTGGCCAACTTTATGGCTCTCTTGCTG
CAAGTGCTCGCAGCGAGAATGGGCATCGTCACTCGCGCACATCTTGCAGA
ATTATGTCGAGACGAATATCCACGGTACGCGACCTATGCTCTGTGGACAA
TGGCCGAACTTGCTATCATTGCCACAGATCTGACAGAAGTGTTAGGCACC
GCAATTGGCATTAATCTTCTCTTTAACCTACCCCTCATGGTTGGGGTTGT
TTTCACGGCGCTAGACACGTTTCTTTTGTTAACTGCCCAAAGCCAGGGTA
TGAGACGCATAGAGCAATTGATCTTCATGTTTTTGGCCTTGATATCGTTT
TGTTTTGTCTTGGAGCTGTTCATGTCAAAACCCAGTATTTCCGGAGTTCT
TGGTGGAATTTTTGTCCCTCGCCTCGACACTTCAAGTTTGTACGTGGCAA
CTGGTATTGTTGGGGCAACCGTTATGCCACACAACTTCTACCTGCACTCT
GCTTTGGTCATAGAACGTGTTCCTGATCGATCGCGTGAAACGCTGGAGTC
CGAATGCCGGTACAACCTCATTGATACAGCCATAGCTTTAAATGCTGCGT
TATTTATCAACTGTGCCATTCTTATAATTGCAGCGGCCAACTTCTGGACA
AGGGGAATCGAAGTAACTACCCTTTCGAAGGCGTACCATCTCCTCGAAAA
CACAGGCTTTAAAGTCGGAAAGGTGGAAGTAGCCCCCTTGCTGTTTGGGG
TGGCTCTTATTGCTTCAGGGCAAAGCTCGACATTATGCGGAACTCTGGCA
GGCCAGTATGTCATGGAAGGATTTCTCGATCTTCGCGCTCCGCCTGTTAT
TCGTCGCCTTGTAACCCGTCTTATCGCCATTGTTCCAGCTCTTATCGTTA
TCTCCATCATGGGTGATTCAGGAACATACCAACTGCTTATCTTTTGTCAG
GTCATCCTTTCCCTTCAATTACCTTTTGCGATCGTTCCAATGATACGGTT
CACGAACTCAACGAGAAGAATGGATGAGTTCAAGAATTCGAAGTCTGTAT
CTGTGTTAGCATGGGCCGCAGCAGGTATCACAGTTTGCCTTAATGTTGCG
TTTGTGTTCCATTCGATAATCCAGGGCATCAAATCAAGTCATCTGGCATT
GAGGTTGCTCAGTCTGGCTTGCGTGGCACCGATCTTCGTCGCCTTGATGA
TATTTCTCGGATGGATTGCATTTAGAACGGAAACTGGAGGATCGGGTCCA
GTATACAGAGTTGAAGATGAGTATGAATTCGTGTCAGAAGACGGACTCGA
TCTTGATTCAATGGGTTCTCCGGTGGGGAGTATACCGACTCCATCTCCGA
AGCCTGTTTCACTCCAGATCGAAACTGGAGTACATCCAGAACTTGATGAA
ACCATTGACTTATACGGAACGGATACGACGTCAAGAAAACGGCAGTTGCA
ACCCTCCCAATGA

Coding sequence (CDS) from alignment at tig00004400_pilon:1774060..1775772+

>Gchil2598.t1 ID=Gchil2598.t1|Name=Gchil2598.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1713bp|location=Sequence derived from alignment at tig00004400_pilon:1774060..1775772+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCAACAACGACGAGATGCCCTCGAGGTAGCCTTCGGAGATGCCAC
CCAAAGCGATGAAGAGGAATTTATGTTCCGACCTCCTGATATTGCTCCAC
AAGTAAGTGATGAAGATGAATGCACAGCTCGCAGAAAGTTCACATGGAAG
GGCGTCGTGACGCACCTGGGGCCGGCCTTTCTCGTATCCATTGGCTACCT
GGATCCCGGCAATTGGGCGACTGATATTGAAGGAGGAAGTAAATTTGGAT
ACAAGTTACTATGGGTTCTCATTCTGGCCAACTTTATGGCTCTCTTGCTG
CAAGTGCTCGCAGCGAGAATGGGCATCGTCACTCGCGCACATCTTGCAGA
ATTATGTCGAGACGAATATCCACGGTACGCGACCTATGCTCTGTGGACAA
TGGCCGAACTTGCTATCATTGCCACAGATCTGACAGAAGTGTTAGGCACC
GCAATTGGCATTAATCTTCTCTTTAACCTACCCCTCATGGTTGGGGTTGT
TTTCACGGCGCTAGACACGTTTCTTTTGTTAACTGCCCAAAGCCAGGGTA
TGAGACGCATAGAGCAATTGATCTTCATGTTTTTGGCCTTGATATCGTTT
TGTTTTGTCTTGGAGCTGTTCATGTCAAAACCCAGTATTTCCGGAGTTCT
TGGTGGAATTTTTGTCCCTCGCCTCGACACTTCAAGTTTGTACGTGGCAA
CTGGTATTGTTGGGGCAACCGTTATGCCACACAACTTCTACCTGCACTCT
GCTTTGGTCATAGAACGTGTTCCTGATCGATCGCGTGAAACGCTGGAGTC
CGAATGCCGGTACAACCTCATTGATACAGCCATAGCTTTAAATGCTGCGT
TATTTATCAACTGTGCCATTCTTATAATTGCAGCGGCCAACTTCTGGACA
AGGGGAATCGAAGTAACTACCCTTTCGAAGGCGTACCATCTCCTCGAAAA
CACAGGCTTTAAAGTCGGAAAGGTGGAAGTAGCCCCCTTGCTGTTTGGGG
TGGCTCTTATTGCTTCAGGGCAAAGCTCGACATTATGCGGAACTCTGGCA
GGCCAGTATGTCATGGAAGGATTTCTCGATCTTCGCGCTCCGCCTGTTAT
TCGTCGCCTTGTAACCCGTCTTATCGCCATTGTTCCAGCTCTTATCGTTA
TCTCCATCATGGGTGATTCAGGAACATACCAACTGCTTATCTTTTGTCAG
GTCATCCTTTCCCTTCAATTACCTTTTGCGATCGTTCCAATGATACGGTT
CACGAACTCAACGAGAAGAATGGATGAGTTCAAGAATTCGAAGTCTGTAT
CTGTGTTAGCATGGGCCGCAGCAGGTATCACAGTTTGCCTTAATGTTGCG
TTTGTGTTCCATTCGATAATCCAGGGCATCAAATCAAGTCATCTGGCATT
GAGGTTGCTCAGTCTGGCTTGCGTGGCACCGATCTTCGTCGCCTTGATGA
TATTTCTCGGATGGATTGCATTTAGAACGGAAACTGGAGGATCGGGTCCA
GTATACAGAGTTGAAGATGAGTATGAATTCGTGTCAGAAGACGGACTCGA
TCTTGATTCAATGGGTTCTCCGGTGGGGAGTATACCGACTCCATCTCCGA
AGCCTGTTTCACTCCAGATCGAAACTGGAGTACATCCAGAACTTGATGAA
ACCATTGACTTATACGGAACGGATACGACGTCAAGAAAACGGCAGTTGCA
ACCCTCCCAATGA