Gchil2589.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2589.t1
Unique Name	Gchil2589.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	667

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:1708739..1710739 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2589	Gchil2589	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 1708739..1710739 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2589.t1.start1	Gchil2589.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 1708739..1708741 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2589.t1.CDS1	Gchil2589.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 1708739..1710739 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2589.t1.exon1	Gchil2589.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 1708739..1710739 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2589.t1.stop1	Gchil2589.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 1710737..1710739 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2589.t1	Gchil2589.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 1708739..1710739 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:1708739..1710739+
coding sequence from alignment at tig00004400_pilon:1708739..1710739+

mRNA sequence

>Gchil2589.t1 ID=Gchil2589.t1|Name=Gchil2589.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=667bp
MDLDSILTRYFADNNVAEWLFAQNDLRKVNAHALDNAFVYTIGIKPLNNV
RTVMDIEDMLIVCGVAGSFVLGIVYGLAKPHIFSDTPFMEGQRPVTRRFA
VDLSVRDALEFMETNYFADGKMAVVFRRFLHTNDASLPVVVAATLHEPCD
APYTLGPVIMRTDVFEAPTCPNCGQCGKRCTCSFGSYAPNGAITHTCFSW
NHFTSMFLSKAQHGLVRIRITVRIANVGDVCISHTQVPVRTVVDKGHGKY
VTLLKRKAVQGMGLDVVPIRLETPLVSKSISNDFLDLHNHYVVRKRQRPS
GLVDQLVPQVPFEQNDAILQDEMQILDMSQMQNPISQMSPNELLKLLNNT
DVSFEHNQTVPFDPVPAIHSSKETELKPSAIDETLTTSVAYNLGQMLPQL
PQYMPVASRDPPQYTPVDAVDGQTDIVKDIEDILKARDRSPATHIDAKHS
HQVMSLEQRSHNHQKSVTTGSSDEAHRAAVTTSSGRSSKKARTFSSSAST
KSSASGDSDSSERKHVCSTCSARFKLKGDLLRHIRTVHEGKKRHQCPTCP
KAFGHSGHLNRHIQSVHLQQRRFKCEICGFQFFQASHLQSHMGHVHDPSK
PFECSDCGVRVNTKLALRSHKGKTKCGSIARDENARLRQDFSAPVPRVEH
MTGGRNNNSRSLSMSA*

spliced messenger RNA

>Gchil2589.t1 ID=Gchil2589.t1|Name=Gchil2589.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2001bp|location=Sequence derived from alignment at tig00004400_pilon:1708739..1710739+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCTCGACTCTATCCTCACACGTTACTTTGCAGACAATAACGTTGC
CGAGTGGCTCTTCGCACAGAATGATTTGAGAAAAGTCAACGCCCACGCGC
TGGACAACGCATTTGTCTACACCATTGGAATCAAACCCCTCAACAATGTC
CGCACCGTCATGGATATCGAAGACATGCTAATTGTATGCGGCGTCGCGGG
TTCCTTCGTGCTTGGCATTGTGTACGGCTTAGCCAAGCCTCACATCTTTT
CAGATACCCCTTTTATGGAAGGCCAGCGCCCCGTTACACGACGCTTTGCA
GTTGATCTCTCCGTGCGCGACGCCCTCGAGTTCATGGAGACCAATTATTT
TGCAGACGGAAAGATGGCCGTAGTCTTTCGACGCTTCCTGCACACCAACG
ACGCCTCATTACCAGTAGTGGTCGCGGCCACCCTCCACGAACCTTGCGAC
GCCCCATACACGCTTGGTCCAGTCATAATGCGAACCGATGTGTTCGAAGC
TCCCACTTGTCCCAATTGCGGTCAATGTGGCAAGCGCTGCACATGCTCTT
TCGGTAGCTACGCGCCGAACGGAGCAATCACACATACTTGCTTTTCATGG
AATCACTTCACCTCCATGTTTTTATCCAAAGCGCAGCATGGTTTGGTCAG
AATCCGAATTACCGTGCGCATTGCTAATGTGGGCGACGTCTGCATCAGTC
ACACTCAAGTCCCAGTGAGGACCGTTGTGGATAAGGGGCACGGAAAGTAT
GTCACTCTGTTGAAGCGTAAAGCTGTGCAAGGAATGGGTCTTGATGTTGT
TCCAATTCGACTAGAAACACCGTTGGTGAGCAAGTCAATCTCAAATGATT
TCCTGGACTTGCACAACCACTATGTTGTGCGAAAGCGTCAACGGCCCTCG
GGTCTAGTCGACCAACTCGTGCCCCAAGTACCTTTCGAACAGAACGACGC
CATTCTTCAGGATGAGATGCAAATTCTCGACATGTCTCAAATGCAGAATC
CCATATCTCAAATGAGTCCAAACGAACTTCTCAAACTGTTAAATAACACC
GATGTTTCGTTTGAACATAATCAAACCGTTCCATTCGACCCTGTTCCAGC
TATTCATTCCTCGAAAGAGACAGAACTGAAACCAAGTGCAATTGACGAAA
CCTTAACCACATCCGTGGCGTACAATCTAGGGCAAATGCTTCCTCAACTG
CCGCAATATATGCCAGTAGCGTCTCGCGATCCCCCGCAGTATACACCCGT
GGATGCTGTGGACGGACAGACGGATATTGTCAAGGACATTGAGGACATCC
TCAAGGCTCGAGACAGGTCACCGGCAACCCATATCGACGCAAAACATTCC
CACCAAGTGATGTCCCTTGAGCAGCGAAGTCACAATCACCAAAAGAGCGT
CACGACAGGGAGCAGTGACGAAGCGCACCGAGCAGCCGTTACGACCTCAT
CAGGCCGATCTTCGAAGAAAGCGCGAACATTCTCTTCGTCGGCATCCACA
AAGTCAAGTGCGTCCGGAGATAGCGATAGCAGTGAGAGGAAGCACGTGTG
TTCGACATGTTCCGCTCGGTTCAAATTGAAAGGAGACTTGCTGCGTCACA
TCCGAACTGTTCATGAAGGGAAAAAACGGCACCAGTGCCCAACTTGCCCA
AAAGCTTTCGGACACTCAGGTCATCTCAATAGACATATCCAATCCGTTCA
TTTGCAGCAGCGAAGGTTCAAATGTGAGATATGTGGGTTTCAATTCTTTC
AAGCCTCACATTTGCAAAGTCACATGGGCCATGTTCACGACCCAAGCAAG
CCATTTGAATGCAGTGATTGTGGTGTGAGAGTGAACACCAAACTTGCTCT
CAGAAGCCACAAGGGTAAGACAAAATGTGGATCAATCGCCAGGGATGAAA
ACGCACGGCTCCGACAAGATTTCAGTGCGCCGGTTCCAAGAGTGGAACAT
ATGACTGGCGGAAGAAACAACAATTCGCGGAGCTTATCTATGAGTGCATA
G

protein sequence of Gchil2589.t1

>Gchil2589.t1 ID=Gchil2589.t1|Name=Gchil2589.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=667bp
MDLDSILTRYFADNNVAEWLFAQNDLRKVNAHALDNAFVYTIGIKPLNNV
RTVMDIEDMLIVCGVAGSFVLGIVYGLAKPHIFSDTPFMEGQRPVTRRFA
VDLSVRDALEFMETNYFADGKMAVVFRRFLHTNDASLPVVVAATLHEPCD
APYTLGPVIMRTDVFEAPTCPNCGQCGKRCTCSFGSYAPNGAITHTCFSW
NHFTSMFLSKAQHGLVRIRITVRIANVGDVCISHTQVPVRTVVDKGHGKY
VTLLKRKAVQGMGLDVVPIRLETPLVSKSISNDFLDLHNHYVVRKRQRPS
GLVDQLVPQVPFEQNDAILQDEMQILDMSQMQNPISQMSPNELLKLLNNT
DVSFEHNQTVPFDPVPAIHSSKETELKPSAIDETLTTSVAYNLGQMLPQL
PQYMPVASRDPPQYTPVDAVDGQTDIVKDIEDILKARDRSPATHIDAKHS
HQVMSLEQRSHNHQKSVTTGSSDEAHRAAVTTSSGRSSKKARTFSSSAST
KSSASGDSDSSERKHVCSTCSARFKLKGDLLRHIRTVHEGKKRHQCPTCP
KAFGHSGHLNRHIQSVHLQQRRFKCEICGFQFFQASHLQSHMGHVHDPSK
PFECSDCGVRVNTKLALRSHKGKTKCGSIARDENARLRQDFSAPVPRVEH
MTGGRNNNSRSLSMSA*

mRNA from alignment at tig00004400_pilon:1708739..1710739+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2589.t1 ID=Gchil2589.t1|Name=Gchil2589.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2001bp|location=Sequence derived from alignment at tig00004400_pilon:1708739..1710739+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCTCGACTCTATCCTCACACGTTACTTTGCAGACAATAACGTTGC
CGAGTGGCTCTTCGCACAGAATGATTTGAGAAAAGTCAACGCCCACGCGC
TGGACAACGCATTTGTCTACACCATTGGAATCAAACCCCTCAACAATGTC
CGCACCGTCATGGATATCGAAGACATGCTAATTGTATGCGGCGTCGCGGG
TTCCTTCGTGCTTGGCATTGTGTACGGCTTAGCCAAGCCTCACATCTTTT
CAGATACCCCTTTTATGGAAGGCCAGCGCCCCGTTACACGACGCTTTGCA
GTTGATCTCTCCGTGCGCGACGCCCTCGAGTTCATGGAGACCAATTATTT
TGCAGACGGAAAGATGGCCGTAGTCTTTCGACGCTTCCTGCACACCAACG
ACGCCTCATTACCAGTAGTGGTCGCGGCCACCCTCCACGAACCTTGCGAC
GCCCCATACACGCTTGGTCCAGTCATAATGCGAACCGATGTGTTCGAAGC
TCCCACTTGTCCCAATTGCGGTCAATGTGGCAAGCGCTGCACATGCTCTT
TCGGTAGCTACGCGCCGAACGGAGCAATCACACATACTTGCTTTTCATGG
AATCACTTCACCTCCATGTTTTTATCCAAAGCGCAGCATGGTTTGGTCAG
AATCCGAATTACCGTGCGCATTGCTAATGTGGGCGACGTCTGCATCAGTC
ACACTCAAGTCCCAGTGAGGACCGTTGTGGATAAGGGGCACGGAAAGTAT
GTCACTCTGTTGAAGCGTAAAGCTGTGCAAGGAATGGGTCTTGATGTTGT
TCCAATTCGACTAGAAACACCGTTGGTGAGCAAGTCAATCTCAAATGATT
TCCTGGACTTGCACAACCACTATGTTGTGCGAAAGCGTCAACGGCCCTCG
GGTCTAGTCGACCAACTCGTGCCCCAAGTACCTTTCGAACAGAACGACGC
CATTCTTCAGGATGAGATGCAAATTCTCGACATGTCTCAAATGCAGAATC
CCATATCTCAAATGAGTCCAAACGAACTTCTCAAACTGTTAAATAACACC
GATGTTTCGTTTGAACATAATCAAACCGTTCCATTCGACCCTGTTCCAGC
TATTCATTCCTCGAAAGAGACAGAACTGAAACCAAGTGCAATTGACGAAA
CCTTAACCACATCCGTGGCGTACAATCTAGGGCAAATGCTTCCTCAACTG
CCGCAATATATGCCAGTAGCGTCTCGCGATCCCCCGCAGTATACACCCGT
GGATGCTGTGGACGGACAGACGGATATTGTCAAGGACATTGAGGACATCC
TCAAGGCTCGAGACAGGTCACCGGCAACCCATATCGACGCAAAACATTCC
CACCAAGTGATGTCCCTTGAGCAGCGAAGTCACAATCACCAAAAGAGCGT
CACGACAGGGAGCAGTGACGAAGCGCACCGAGCAGCCGTTACGACCTCAT
CAGGCCGATCTTCGAAGAAAGCGCGAACATTCTCTTCGTCGGCATCCACA
AAGTCAAGTGCGTCCGGAGATAGCGATAGCAGTGAGAGGAAGCACGTGTG
TTCGACATGTTCCGCTCGGTTCAAATTGAAAGGAGACTTGCTGCGTCACA
TCCGAACTGTTCATGAAGGGAAAAAACGGCACCAGTGCCCAACTTGCCCA
AAAGCTTTCGGACACTCAGGTCATCTCAATAGACATATCCAATCCGTTCA
TTTGCAGCAGCGAAGGTTCAAATGTGAGATATGTGGGTTTCAATTCTTTC
AAGCCTCACATTTGCAAAGTCACATGGGCCATGTTCACGACCCAAGCAAG
CCATTTGAATGCAGTGATTGTGGTGTGAGAGTGAACACCAAACTTGCTCT
CAGAAGCCACAAGGGTAAGACAAAATGTGGATCAATCGCCAGGGATGAAA
ACGCACGGCTCCGACAAGATTTCAGTGCGCCGGTTCCAAGAGTGGAACAT
ATGACTGGCGGAAGAAACAACAATTCGCGGAGCTTATCTATGAGTGCATA
G

Coding sequence (CDS) from alignment at tig00004400_pilon:1708739..1710739+

>Gchil2589.t1 ID=Gchil2589.t1|Name=Gchil2589.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2001bp|location=Sequence derived from alignment at tig00004400_pilon:1708739..1710739+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCTCGACTCTATCCTCACACGTTACTTTGCAGACAATAACGTTGC
CGAGTGGCTCTTCGCACAGAATGATTTGAGAAAAGTCAACGCCCACGCGC
TGGACAACGCATTTGTCTACACCATTGGAATCAAACCCCTCAACAATGTC
CGCACCGTCATGGATATCGAAGACATGCTAATTGTATGCGGCGTCGCGGG
TTCCTTCGTGCTTGGCATTGTGTACGGCTTAGCCAAGCCTCACATCTTTT
CAGATACCCCTTTTATGGAAGGCCAGCGCCCCGTTACACGACGCTTTGCA
GTTGATCTCTCCGTGCGCGACGCCCTCGAGTTCATGGAGACCAATTATTT
TGCAGACGGAAAGATGGCCGTAGTCTTTCGACGCTTCCTGCACACCAACG
ACGCCTCATTACCAGTAGTGGTCGCGGCCACCCTCCACGAACCTTGCGAC
GCCCCATACACGCTTGGTCCAGTCATAATGCGAACCGATGTGTTCGAAGC
TCCCACTTGTCCCAATTGCGGTCAATGTGGCAAGCGCTGCACATGCTCTT
TCGGTAGCTACGCGCCGAACGGAGCAATCACACATACTTGCTTTTCATGG
AATCACTTCACCTCCATGTTTTTATCCAAAGCGCAGCATGGTTTGGTCAG
AATCCGAATTACCGTGCGCATTGCTAATGTGGGCGACGTCTGCATCAGTC
ACACTCAAGTCCCAGTGAGGACCGTTGTGGATAAGGGGCACGGAAAGTAT
GTCACTCTGTTGAAGCGTAAAGCTGTGCAAGGAATGGGTCTTGATGTTGT
TCCAATTCGACTAGAAACACCGTTGGTGAGCAAGTCAATCTCAAATGATT
TCCTGGACTTGCACAACCACTATGTTGTGCGAAAGCGTCAACGGCCCTCG
GGTCTAGTCGACCAACTCGTGCCCCAAGTACCTTTCGAACAGAACGACGC
CATTCTTCAGGATGAGATGCAAATTCTCGACATGTCTCAAATGCAGAATC
CCATATCTCAAATGAGTCCAAACGAACTTCTCAAACTGTTAAATAACACC
GATGTTTCGTTTGAACATAATCAAACCGTTCCATTCGACCCTGTTCCAGC
TATTCATTCCTCGAAAGAGACAGAACTGAAACCAAGTGCAATTGACGAAA
CCTTAACCACATCCGTGGCGTACAATCTAGGGCAAATGCTTCCTCAACTG
CCGCAATATATGCCAGTAGCGTCTCGCGATCCCCCGCAGTATACACCCGT
GGATGCTGTGGACGGACAGACGGATATTGTCAAGGACATTGAGGACATCC
TCAAGGCTCGAGACAGGTCACCGGCAACCCATATCGACGCAAAACATTCC
CACCAAGTGATGTCCCTTGAGCAGCGAAGTCACAATCACCAAAAGAGCGT
CACGACAGGGAGCAGTGACGAAGCGCACCGAGCAGCCGTTACGACCTCAT
CAGGCCGATCTTCGAAGAAAGCGCGAACATTCTCTTCGTCGGCATCCACA
AAGTCAAGTGCGTCCGGAGATAGCGATAGCAGTGAGAGGAAGCACGTGTG
TTCGACATGTTCCGCTCGGTTCAAATTGAAAGGAGACTTGCTGCGTCACA
TCCGAACTGTTCATGAAGGGAAAAAACGGCACCAGTGCCCAACTTGCCCA
AAAGCTTTCGGACACTCAGGTCATCTCAATAGACATATCCAATCCGTTCA
TTTGCAGCAGCGAAGGTTCAAATGTGAGATATGTGGGTTTCAATTCTTTC
AAGCCTCACATTTGCAAAGTCACATGGGCCATGTTCACGACCCAAGCAAG
CCATTTGAATGCAGTGATTGTGGTGTGAGAGTGAACACCAAACTTGCTCT
CAGAAGCCACAAGGGTAAGACAAAATGTGGATCAATCGCCAGGGATGAAA
ACGCACGGCTCCGACAAGATTTCAGTGCGCCGGTTCCAAGAGTGGAACAT
ATGACTGGCGGAAGAAACAACAATTCGCGGAGCTTATCTATGAGTGCATA
G