Gchil2656.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2656.t1
Unique NameGchil2656.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length536
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:2218354..2219961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4155.Migut.B00311.1.p
PFAMszf-C3HC4
Max annot lvl35493|Streptophyta
GOsGO:0002244,GO:0002376,GO:0002520,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0007275,GO:0008150,GO:0009987,GO:0030097,GO:0030154,GO:0032501,GO:0032502,GO:0044424,GO:0044444,GO:0044464,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869
Evalue3.51e-24
EggNOG OGsKOG2164@1|root,KOG4199@1|root,KOG2164@2759|Eukaryota,KOG4199@2759|Eukaryota,37PSY@33090|Viridiplantae,3GC7R@35493|Streptophyta,44DZ9@71274|asterids
DescriptionArmadillo/beta-catenin-like repeats
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2656Gchil2656Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 2218354..2219961 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2656.t1.stop1Gchil2656.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 2218354..2218356 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2656.t1.CDS1Gchil2656.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2218354..2219961 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2656.t1.exon1Gchil2656.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2218354..2219961 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2656.t1.start1Gchil2656.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 2219959..2219961 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2656.t1Gchil2656.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 2218354..2219961 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2656.t1 ID=Gchil2656.t1|Name=Gchil2656.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=536bp
MATKQVRQSTFDGIVCEGIQEFGFSPEEAVTDACEQLRKSGVTDFSNLDI
SIPSNESRNSQSSASLVHAVRDTLHSENPSDLIDAVSTLISNLNDKRDAA
SAVSNGIIEVLADCMGYSLKFHYTERLSVVRPMSELLVILCANDELNRSS
FITLPGAKGLRNMKSLFNSLVLPNSLAEQGRETSVFDFETCAALVQSMSA
IQLKKEHVKQVFAANESLDCLIKYFENACCGIIESNDDEKTLPKKLFVEL
CVYTRQLLSPDDSTVKVAETFDRARVLAGGNTVTESGLRPLTTSSNLLEI
FSRFIVKVQVNNTLSQTTKLQLMTESIACIRICCVSDEICSHIIKLNIHE
SCTSLLQQFSLEENIVNVCIGLLRNLAGRDECKSPIFENITLLTDVVRQH
LGTCSMIGEQYCGLIGSLCLRRPDLANKIVKTGMADIVLDVMEMYNEDKI
LQRVGCLAVRNICARDVEARCHLRKTGLAEKIIRKAWRTHSHCDDVAYAA
LRDMDVLEDSELRRDERYTMPTGFYNTPTVREKGR*
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spliced messenger RNA

>Gchil2656.t1 ID=Gchil2656.t1|Name=Gchil2656.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1608bp|location=Sequence derived from alignment at tig00004400_pilon:2218354..2219961- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACCAAACAGGTCCGGCAGTCCACATTTGATGGAATAGTCTGCGA
AGGTATTCAGGAATTTGGATTCTCCCCTGAGGAAGCAGTAACTGACGCGT
GCGAGCAGTTGCGAAAATCAGGCGTCACAGACTTTTCAAATTTGGATATA
TCAATACCATCCAATGAATCAAGAAACAGTCAATCTTCTGCATCACTCGT
GCATGCCGTTCGAGATACTCTGCACTCCGAGAATCCATCCGACTTGATTG
ACGCTGTTTCCACGTTGATTTCCAACTTAAACGATAAAAGAGATGCCGCA
AGTGCTGTGTCGAACGGTATCATTGAAGTACTAGCAGACTGTATGGGATA
CAGCCTCAAATTTCACTATACGGAAAGACTGAGTGTGGTGCGGCCTATGA
GTGAGCTTCTTGTAATATTATGCGCCAATGATGAACTGAACCGCTCTTCA
TTTATTACCTTGCCTGGTGCGAAGGGTCTTCGCAACATGAAGTCATTATT
CAACTCATTGGTGTTGCCCAACTCTTTGGCAGAACAGGGTCGAGAAACTT
CCGTTTTTGACTTCGAAACATGCGCCGCTCTAGTGCAATCGATGTCTGCC
ATACAACTCAAAAAGGAGCATGTGAAGCAGGTTTTCGCAGCAAACGAGTC
TTTGGACTGCCTTATTAAATACTTCGAGAATGCATGTTGTGGAATCATTG
AAAGCAATGACGACGAAAAGACCCTGCCCAAGAAGCTTTTTGTCGAGCTA
TGTGTATATACGAGACAACTGTTGTCACCGGACGATTCTACGGTCAAAGT
TGCAGAAACATTTGATCGTGCTCGTGTACTTGCTGGGGGCAATACTGTAA
CCGAAAGTGGGCTTCGGCCTCTGACAACTTCATCAAATCTATTGGAGATT
TTCTCGAGGTTCATCGTGAAGGTACAGGTGAACAATACACTGTCACAAAC
TACTAAGCTACAACTCATGACTGAAAGCATCGCATGCATCCGTATATGTT
GTGTTTCCGATGAGATCTGCTCTCACATAATCAAGCTGAATATACATGAG
TCATGCACTTCGCTTTTACAACAATTCAGCTTGGAAGAAAATATTGTCAA
CGTCTGTATAGGGCTCCTTCGCAACCTAGCAGGGCGAGACGAGTGTAAAA
GTCCTATATTTGAAAATATAACGTTGCTAACAGATGTTGTAAGGCAACAT
TTGGGCACTTGTTCAATGATTGGTGAACAATATTGCGGTCTTATAGGCAG
TCTTTGCCTTCGGAGACCCGATCTCGCGAACAAGATAGTCAAAACGGGAA
TGGCAGATATCGTTCTGGACGTGATGGAAATGTACAATGAGGATAAGATC
CTGCAGCGAGTTGGGTGCCTGGCGGTACGCAACATTTGCGCAAGGGATGT
GGAAGCAAGGTGCCATTTGCGGAAAACAGGGCTGGCGGAAAAAATTATCA
GAAAGGCATGGAGGACGCATTCACATTGTGATGATGTAGCCTATGCCGCT
CTCAGGGATATGGATGTTCTTGAAGATAGTGAATTGCGTCGCGATGAACG
TTACACAATGCCCACCGGCTTCTACAACACACCTACCGTTCGTGAAAAGG
GTAGGTGA
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protein sequence of Gchil2656.t1

>Gchil2656.t1 ID=Gchil2656.t1|Name=Gchil2656.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=536bp
MATKQVRQSTFDGIVCEGIQEFGFSPEEAVTDACEQLRKSGVTDFSNLDI
SIPSNESRNSQSSASLVHAVRDTLHSENPSDLIDAVSTLISNLNDKRDAA
SAVSNGIIEVLADCMGYSLKFHYTERLSVVRPMSELLVILCANDELNRSS
FITLPGAKGLRNMKSLFNSLVLPNSLAEQGRETSVFDFETCAALVQSMSA
IQLKKEHVKQVFAANESLDCLIKYFENACCGIIESNDDEKTLPKKLFVEL
CVYTRQLLSPDDSTVKVAETFDRARVLAGGNTVTESGLRPLTTSSNLLEI
FSRFIVKVQVNNTLSQTTKLQLMTESIACIRICCVSDEICSHIIKLNIHE
SCTSLLQQFSLEENIVNVCIGLLRNLAGRDECKSPIFENITLLTDVVRQH
LGTCSMIGEQYCGLIGSLCLRRPDLANKIVKTGMADIVLDVMEMYNEDKI
LQRVGCLAVRNICARDVEARCHLRKTGLAEKIIRKAWRTHSHCDDVAYAA
LRDMDVLEDSELRRDERYTMPTGFYNTPTVREKGR*
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mRNA from alignment at tig00004400_pilon:2218354..2219961-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2656.t1 ID=Gchil2656.t1|Name=Gchil2656.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1608bp|location=Sequence derived from alignment at tig00004400_pilon:2218354..2219961- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTACCAAACAGGTCCGGCAGTCCACATTTGATGGAATAGTCTGCGA
AGGTATTCAGGAATTTGGATTCTCCCCTGAGGAAGCAGTAACTGACGCGT
GCGAGCAGTTGCGAAAATCAGGCGTCACAGACTTTTCAAATTTGGATATA
TCAATACCATCCAATGAATCAAGAAACAGTCAATCTTCTGCATCACTCGT
GCATGCCGTTCGAGATACTCTGCACTCCGAGAATCCATCCGACTTGATTG
ACGCTGTTTCCACGTTGATTTCCAACTTAAACGATAAAAGAGATGCCGCA
AGTGCTGTGTCGAACGGTATCATTGAAGTACTAGCAGACTGTATGGGATA
CAGCCTCAAATTTCACTATACGGAAAGACTGAGTGTGGTGCGGCCTATGA
GTGAGCTTCTTGTAATATTATGCGCCAATGATGAACTGAACCGCTCTTCA
TTTATTACCTTGCCTGGTGCGAAGGGTCTTCGCAACATGAAGTCATTATT
CAACTCATTGGTGTTGCCCAACTCTTTGGCAGAACAGGGTCGAGAAACTT
CCGTTTTTGACTTCGAAACATGCGCCGCTCTAGTGCAATCGATGTCTGCC
ATACAACTCAAAAAGGAGCATGTGAAGCAGGTTTTCGCAGCAAACGAGTC
TTTGGACTGCCTTATTAAATACTTCGAGAATGCATGTTGTGGAATCATTG
AAAGCAATGACGACGAAAAGACCCTGCCCAAGAAGCTTTTTGTCGAGCTA
TGTGTATATACGAGACAACTGTTGTCACCGGACGATTCTACGGTCAAAGT
TGCAGAAACATTTGATCGTGCTCGTGTACTTGCTGGGGGCAATACTGTAA
CCGAAAGTGGGCTTCGGCCTCTGACAACTTCATCAAATCTATTGGAGATT
TTCTCGAGGTTCATCGTGAAGGTACAGGTGAACAATACACTGTCACAAAC
TACTAAGCTACAACTCATGACTGAAAGCATCGCATGCATCCGTATATGTT
GTGTTTCCGATGAGATCTGCTCTCACATAATCAAGCTGAATATACATGAG
TCATGCACTTCGCTTTTACAACAATTCAGCTTGGAAGAAAATATTGTCAA
CGTCTGTATAGGGCTCCTTCGCAACCTAGCAGGGCGAGACGAGTGTAAAA
GTCCTATATTTGAAAATATAACGTTGCTAACAGATGTTGTAAGGCAACAT
TTGGGCACTTGTTCAATGATTGGTGAACAATATTGCGGTCTTATAGGCAG
TCTTTGCCTTCGGAGACCCGATCTCGCGAACAAGATAGTCAAAACGGGAA
TGGCAGATATCGTTCTGGACGTGATGGAAATGTACAATGAGGATAAGATC
CTGCAGCGAGTTGGGTGCCTGGCGGTACGCAACATTTGCGCAAGGGATGT
GGAAGCAAGGTGCCATTTGCGGAAAACAGGGCTGGCGGAAAAAATTATCA
GAAAGGCATGGAGGACGCATTCACATTGTGATGATGTAGCCTATGCCGCT
CTCAGGGATATGGATGTTCTTGAAGATAGTGAATTGCGTCGCGATGAACG
TTACACAATGCCCACCGGCTTCTACAACACACCTACCGTTCGTGAAAAGG
GTAGGTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:2218354..2219961-

>Gchil2656.t1 ID=Gchil2656.t1|Name=Gchil2656.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1608bp|location=Sequence derived from alignment at tig00004400_pilon:2218354..2219961- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTACCAAACAGGTCCGGCAGTCCACATTTGATGGAATAGTCTGCGA
AGGTATTCAGGAATTTGGATTCTCCCCTGAGGAAGCAGTAACTGACGCGT
GCGAGCAGTTGCGAAAATCAGGCGTCACAGACTTTTCAAATTTGGATATA
TCAATACCATCCAATGAATCAAGAAACAGTCAATCTTCTGCATCACTCGT
GCATGCCGTTCGAGATACTCTGCACTCCGAGAATCCATCCGACTTGATTG
ACGCTGTTTCCACGTTGATTTCCAACTTAAACGATAAAAGAGATGCCGCA
AGTGCTGTGTCGAACGGTATCATTGAAGTACTAGCAGACTGTATGGGATA
CAGCCTCAAATTTCACTATACGGAAAGACTGAGTGTGGTGCGGCCTATGA
GTGAGCTTCTTGTAATATTATGCGCCAATGATGAACTGAACCGCTCTTCA
TTTATTACCTTGCCTGGTGCGAAGGGTCTTCGCAACATGAAGTCATTATT
CAACTCATTGGTGTTGCCCAACTCTTTGGCAGAACAGGGTCGAGAAACTT
CCGTTTTTGACTTCGAAACATGCGCCGCTCTAGTGCAATCGATGTCTGCC
ATACAACTCAAAAAGGAGCATGTGAAGCAGGTTTTCGCAGCAAACGAGTC
TTTGGACTGCCTTATTAAATACTTCGAGAATGCATGTTGTGGAATCATTG
AAAGCAATGACGACGAAAAGACCCTGCCCAAGAAGCTTTTTGTCGAGCTA
TGTGTATATACGAGACAACTGTTGTCACCGGACGATTCTACGGTCAAAGT
TGCAGAAACATTTGATCGTGCTCGTGTACTTGCTGGGGGCAATACTGTAA
CCGAAAGTGGGCTTCGGCCTCTGACAACTTCATCAAATCTATTGGAGATT
TTCTCGAGGTTCATCGTGAAGGTACAGGTGAACAATACACTGTCACAAAC
TACTAAGCTACAACTCATGACTGAAAGCATCGCATGCATCCGTATATGTT
GTGTTTCCGATGAGATCTGCTCTCACATAATCAAGCTGAATATACATGAG
TCATGCACTTCGCTTTTACAACAATTCAGCTTGGAAGAAAATATTGTCAA
CGTCTGTATAGGGCTCCTTCGCAACCTAGCAGGGCGAGACGAGTGTAAAA
GTCCTATATTTGAAAATATAACGTTGCTAACAGATGTTGTAAGGCAACAT
TTGGGCACTTGTTCAATGATTGGTGAACAATATTGCGGTCTTATAGGCAG
TCTTTGCCTTCGGAGACCCGATCTCGCGAACAAGATAGTCAAAACGGGAA
TGGCAGATATCGTTCTGGACGTGATGGAAATGTACAATGAGGATAAGATC
CTGCAGCGAGTTGGGTGCCTGGCGGTACGCAACATTTGCGCAAGGGATGT
GGAAGCAAGGTGCCATTTGCGGAAAACAGGGCTGGCGGAAAAAATTATCA
GAAAGGCATGGAGGACGCATTCACATTGTGATGATGTAGCCTATGCCGCT
CTCAGGGATATGGATGTTCTTGAAGATAGTGAATTGCGTCGCGATGAACG
TTACACAATGCCCACCGGCTTCTACAACACACCTACCGTTCGTGAAAAGG
GTAGGTGA
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