Gchil2661.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2661.t1
Unique NameGchil2661.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length145
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:2230607..2231250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708857.1
PFAMsProfilin
Max annot lvl2759|Eukaryota
KEGG koko:K05759
KEGG Pathwayko04013,ko04015,ko04810,ko05131,ko05132,map04013,map04015,map04810,map05131,map05132
GOsGO:0006996,GO:0007010,GO:0007015,GO:0008150,GO:0009653,GO:0009987,GO:0010927,GO:0016043,GO:0022607,GO:0030029,GO:0030036,GO:0030154,GO:0030239,GO:0031032,GO:0032502,GO:0032989,GO:0042692,GO:0044085,GO:0048468,GO:0048646,GO:0048856,GO:0048869,GO:0051146,GO:0055001,GO:0055002,GO:0061061,GO:0070925,GO:0071689,GO:0071840,GO:0097435
Evalue1.25e-43
EggNOG OGsKOG1755@1|root,KOG1755@2759|Eukaryota
Descriptionsequestering of actin monomers
COG categoryO
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2661Gchil2661Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 2230607..2231250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2661.t1Gchil2661.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 2230607..2231250 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2661.t1.start1Gchil2661.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 2230607..2230609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2661.t1.CDS1Gchil2661.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2230607..2230663 +
Gchil2661.t1.CDS2Gchil2661.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2230773..2230924 +
Gchil2661.t1.CDS3Gchil2661.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2231025..2231250 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2661.t1.exon1Gchil2661.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2230607..2230663 +
Gchil2661.t1.exon2Gchil2661.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2230773..2230924 +
Gchil2661.t1.exon3Gchil2661.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2231025..2231250 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2661.t1.intron1Gchil2661.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 2230664..2230772 +
Gchil2661.t1.intron2Gchil2661.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 2230925..2231024 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2661.t1.stop1Gchil2661.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 2231248..2231250 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2661.t1 ID=Gchil2661.t1|Name=Gchil2661.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=145bp
MANDWQTYIDDQMVPAGFMYAAIYAHDGTLWASTPGFTVGPEELQIMDQA
LRNEDLGKISAAGFTIATQKYTFTRGEVGSDDGSPAFCQGRCKEEGKTSQ
GCIVYCTNQAFLIGVHDPNYTDSSFGKVNTEAGRIADYLMDSGY*
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spliced messenger RNA

>Gchil2661.t1 ID=Gchil2661.t1|Name=Gchil2661.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=435bp|location=Sequence derived from alignment at tig00004400_pilon:2230607..2231250+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAATGATTGGCAGACTTACATTGACGACCAAATGGTGCCCGCTGG
CTTCATGTACGCCGCGATCTACGCCCATGATGGAACCTTGTGGGCCAGCA
CCCCAGGCTTTACCGTCGGCCCTGAAGAGTTGCAGATCATGGACCAAGCT
CTCCGTAACGAAGACCTTGGAAAGATATCTGCAGCTGGCTTCACTATCGC
CACTCAAAAGTACACATTTACTCGTGGTGAGGTCGGCAGCGACGATGGTT
CGCCCGCCTTTTGTCAGGGCCGTTGTAAGGAGGAAGGAAAGACCTCGCAG
GGCTGCATCGTTTACTGCACTAATCAGGCTTTCCTCATCGGTGTGCATGA
CCCCAATTACACTGATTCTTCTTTTGGAAAGGTCAACACTGAAGCTGGCC
GTATTGCCGACTACCTTATGGACTCGGGATATTAA
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protein sequence of Gchil2661.t1

>Gchil2661.t1 ID=Gchil2661.t1|Name=Gchil2661.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=145bp
MANDWQTYIDDQMVPAGFMYAAIYAHDGTLWASTPGFTVGPEELQIMDQA
LRNEDLGKISAAGFTIATQKYTFTRGEVGSDDGSPAFCQGRCKEEGKTSQ
GCIVYCTNQAFLIGVHDPNYTDSSFGKVNTEAGRIADYLMDSGY*
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mRNA from alignment at tig00004400_pilon:2230607..2231250+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2661.t1 ID=Gchil2661.t1|Name=Gchil2661.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=644bp|location=Sequence derived from alignment at tig00004400_pilon:2230607..2231250+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGAATGATTGGCAGACTTACATTGACGACCAAATGGTGCCCGCTGG
CTTCATGGTACGTGCGTCCATCTCACCGGCTGCCACACCGCCGACGCTCA
CGCTTCCCGTCTTCTTTCTCAGAAATGGCTGACACTTCCCTCCCTCACAC
CCGCCAATTCGAGCAGTACGCCGCGATCTACGCCCATGATGGAACCTTGT
GGGCCAGCACCCCAGGCTTTACCGTCGGCCCTGAAGAGTTGCAGATCATG
GACCAAGCTCTCCGTAACGAAGACCTTGGAAAGATATCTGCAGCTGGCTT
CACTATCGCCACTCAAAAGTAAGCATCCCAATTCGCTCATTATACCCATT
CACTCATTACCTTGCTCGTTTTTGTTTGCCCTTCTAACACCTGCATGACA
CATTCGTTCGTTGTCCAGGTACACATTTACTCGTGGTGAGGTCGGCAGCG
ACGATGGTTCGCCCGCCTTTTGTCAGGGCCGTTGTAAGGAGGAAGGAAAG
ACCTCGCAGGGCTGCATCGTTTACTGCACTAATCAGGCTTTCCTCATCGG
TGTGCATGACCCCAATTACACTGATTCTTCTTTTGGAAAGGTCAACACTG
AAGCTGGCCGTATTGCCGACTACCTTATGGACTCGGGATATTAA
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Coding sequence (CDS) from alignment at tig00004400_pilon:2230607..2231250+

>Gchil2661.t1 ID=Gchil2661.t1|Name=Gchil2661.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=435bp|location=Sequence derived from alignment at tig00004400_pilon:2230607..2231250+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGAATGATTGGCAGACTTACATTGACGACCAAATGGTGCCCGCTGG
CTTCATGTACGCCGCGATCTACGCCCATGATGGAACCTTGTGGGCCAGCA
CCCCAGGCTTTACCGTCGGCCCTGAAGAGTTGCAGATCATGGACCAAGCT
CTCCGTAACGAAGACCTTGGAAAGATATCTGCAGCTGGCTTCACTATCGC
CACTCAAAAGTACACATTTACTCGTGGTGAGGTCGGCAGCGACGATGGTT
CGCCCGCCTTTTGTCAGGGCCGTTGTAAGGAGGAAGGAAAGACCTCGCAG
GGCTGCATCGTTTACTGCACTAATCAGGCTTTCCTCATCGGTGTGCATGA
CCCCAATTACACTGATTCTTCTTTTGGAAAGGTCAACACTGAAGCTGGCC
GTATTGCCGACTACCTTATGGACTCGGGATATTAA
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