Gchil2671.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2671.t1
Unique NameGchil2671.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length633
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:2321183..2323340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2671Gchil2671Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 2321183..2323340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2671.t1Gchil2671.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 2321183..2323340 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2671.t1.start1Gchil2671.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 2321183..2321185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2671.t1.CDS1Gchil2671.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2321183..2321216 +
Gchil2671.t1.CDS2Gchil2671.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2321335..2321838 +
Gchil2671.t1.CDS3Gchil2671.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2321980..2323340 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2671.t1.exon1Gchil2671.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2321183..2321216 +
Gchil2671.t1.exon2Gchil2671.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2321335..2321838 +
Gchil2671.t1.exon3Gchil2671.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2321980..2323340 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2671.t1.intron1Gchil2671.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 2321217..2321334 +
Gchil2671.t1.intron2Gchil2671.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 2321839..2321979 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2671.t1.stop1Gchil2671.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 2323338..2323340 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2671.t1 ID=Gchil2671.t1|Name=Gchil2671.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=633bp
MNNAQQAFSNDGSEAIRRLQREWRIAKRKEIEDKKRKKKFRAMETPAQVS
CNAAPQYLTMQSNSVSLPHNSAASVHFPFQPHIEQRQTNTASPLFVNSMQ
VDSVPSHSQQHASVELTDEKQNQFAQHHSGSSVAPPRSQETGQYSSSHIA
HSNRDSVDCSPPSMSHGVMHDSTGSIEVSAGMSQPVGSHYLSSTREGSTF
TALGEQKVPHLQNTAGAQRSTAVDNNNEHSGSIDHAVSEETRRKMEVEEA
QRRWRENKRREIAMKRARAASSKRGRKRTKFLHQHPIIGHPVHVVSGSLS
LHPSVSFQASTGPTNALPVPSALHNFGTNDQVQVSSGEVSSAMIRSIGTS
ASEPISSSIGMSGPSHAPVSFPLSSVPIPSSVAVPVVPALTIQHIQSSNF
GAGHDPDPGFNSSPLNASNQYSNMVTPERVPHSGMNTEGLHSIPEEDGAV
ALYEPLPQNTREPAHASGAQAVIPAATEVCATDLIDSRSNQNDVPDHTTG
RGQSKPLAIPPDTDVSSPVKMADGSRLDQPASEEVENSRTEKEEIHFVAA
QTAVREHENSEATAATEPQIENGKRSTSNERTTKQFEDNRKPSVENGAGK
EFEDPQESFQEDGSDDIMNSVNWHSLGSIDNR*
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spliced messenger RNA

>Gchil2671.t1 ID=Gchil2671.t1|Name=Gchil2671.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1899bp|location=Sequence derived from alignment at tig00004400_pilon:2321183..2323340+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAACGCGCAACAGGCGTTTTCAAACGATGGCTCTGAAGCCATTCG
TCGGCTGCAACGCGAGTGGCGAATAGCAAAGCGTAAGGAAATTGAGGACA
AGAAGCGCAAAAAGAAGTTTCGAGCAATGGAAACCCCGGCTCAAGTTTCA
TGCAACGCCGCCCCGCAATATTTAACCATGCAATCTAATAGCGTATCTCT
TCCGCACAACTCAGCTGCCAGCGTTCATTTTCCATTTCAACCCCATATCG
AACAGAGGCAGACAAATACCGCAAGCCCATTGTTTGTGAACTCTATGCAA
GTCGATAGTGTGCCATCGCATTCGCAGCAGCATGCATCTGTCGAGCTCAC
TGATGAAAAGCAGAACCAATTCGCCCAGCATCACTCTGGTTCTAGTGTTG
CTCCACCGCGATCGCAAGAGACCGGGCAATACTCTTCAAGTCATATTGCT
CATTCAAATCGCGACTCTGTTGATTGTTCCCCGCCCTCTATGTCCCATGG
AGTCATGCATGACAGCACGGGCTCAATTGAAGTTTCTGCGGGAATGTCGC
AACCTGTGGGTAGCCATTACTTATCCTCTACACGGGAAGGTTCTACTTTC
ACGGCACTGGGAGAGCAGAAGGTTCCGCATCTTCAAAACACTGCGGGAGC
TCAAAGATCAACGGCTGTTGATAACAACAACGAACATTCTGGTTCTATTG
ACCATGCTGTGTCCGAAGAAACGCGAAGGAAAATGGAGGTTGAAGAGGCA
CAGAGACGGTGGAGAGAAAACAAGCGAAGGGAAATCGCAATGAAGCGAGC
CAGGGCGGCTAGTTCGAAGCGTGGTCGAAAGCGTACCAAGTTTCTACACC
AACACCCAATAATCGGCCATCCTGTACATGTTGTTTCGGGAAGTCTCTCT
CTGCACCCGAGTGTTTCATTTCAGGCTTCTACCGGACCAACAAATGCCCT
GCCAGTGCCATCTGCATTACACAATTTTGGCACTAACGACCAGGTACAAG
TTTCTTCTGGTGAAGTGTCGTCGGCAATGATAAGATCAATTGGAACCTCG
GCTTCTGAGCCCATTTCTTCATCAATTGGGATGTCAGGCCCATCACATGC
ACCTGTATCGTTTCCTCTTTCATCAGTACCGATTCCTTCGTCAGTTGCTG
TTCCAGTGGTTCCTGCATTGACAATTCAGCACATACAATCATCAAACTTC
GGAGCGGGCCATGACCCTGATCCGGGATTCAACTCTTCCCCTTTGAACGC
ATCTAACCAATACTCGAACATGGTAACTCCTGAACGAGTACCCCACAGCG
GCATGAATACGGAAGGATTACATAGCATTCCTGAGGAGGATGGTGCTGTG
GCTTTATACGAACCACTTCCCCAGAATACGAGGGAACCAGCCCATGCTTC
TGGGGCCCAGGCAGTCATTCCTGCGGCAACTGAGGTTTGCGCGACGGATT
TGATCGATTCACGATCAAATCAAAATGATGTCCCGGATCATACTACTGGA
AGAGGACAATCAAAGCCACTCGCCATACCTCCAGACACAGATGTATCCTC
TCCTGTAAAGATGGCCGATGGAAGTCGTTTAGATCAACCCGCTTCTGAGG
AAGTAGAAAACTCGAGGACAGAGAAAGAAGAGATACACTTTGTTGCTGCG
CAGACGGCAGTGAGGGAACATGAAAATAGCGAGGCAACTGCCGCTACGGA
ACCTCAAATTGAGAACGGAAAGCGTTCTACAAGCAATGAAAGAACCACAA
AACAGTTCGAAGACAATAGAAAACCATCAGTGGAGAACGGAGCCGGAAAG
GAGTTTGAAGACCCACAGGAATCTTTTCAAGAGGATGGCAGCGATGACAT
TATGAATTCGGTAAATTGGCACAGCCTTGGGAGCATTGATAACAGATAA
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protein sequence of Gchil2671.t1

>Gchil2671.t1 ID=Gchil2671.t1|Name=Gchil2671.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=633bp
MNNAQQAFSNDGSEAIRRLQREWRIAKRKEIEDKKRKKKFRAMETPAQVS
CNAAPQYLTMQSNSVSLPHNSAASVHFPFQPHIEQRQTNTASPLFVNSMQ
VDSVPSHSQQHASVELTDEKQNQFAQHHSGSSVAPPRSQETGQYSSSHIA
HSNRDSVDCSPPSMSHGVMHDSTGSIEVSAGMSQPVGSHYLSSTREGSTF
TALGEQKVPHLQNTAGAQRSTAVDNNNEHSGSIDHAVSEETRRKMEVEEA
QRRWRENKRREIAMKRARAASSKRGRKRTKFLHQHPIIGHPVHVVSGSLS
LHPSVSFQASTGPTNALPVPSALHNFGTNDQVQVSSGEVSSAMIRSIGTS
ASEPISSSIGMSGPSHAPVSFPLSSVPIPSSVAVPVVPALTIQHIQSSNF
GAGHDPDPGFNSSPLNASNQYSNMVTPERVPHSGMNTEGLHSIPEEDGAV
ALYEPLPQNTREPAHASGAQAVIPAATEVCATDLIDSRSNQNDVPDHTTG
RGQSKPLAIPPDTDVSSPVKMADGSRLDQPASEEVENSRTEKEEIHFVAA
QTAVREHENSEATAATEPQIENGKRSTSNERTTKQFEDNRKPSVENGAGK
EFEDPQESFQEDGSDDIMNSVNWHSLGSIDNR*
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mRNA from alignment at tig00004400_pilon:2321183..2323340+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2671.t1 ID=Gchil2671.t1|Name=Gchil2671.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2158bp|location=Sequence derived from alignment at tig00004400_pilon:2321183..2323340+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACAACGCGCAACAGGCGTTTTCAAACGATGGTATGTTCCTGGCGAT
GTACATTGAACTGTCTGAATCTAATTACGCGATTATAAACTGTTCACATA
ACTCTTACATCTTTCATCTCGATCTTCTCTAAAACTTGTGCGCGGTATGC
AGGCTCTGAAGCCATTCGTCGGCTGCAACGCGAGTGGCGAATAGCAAAGC
GTAAGGAAATTGAGGACAAGAAGCGCAAAAAGAAGTTTCGAGCAATGGAA
ACCCCGGCTCAAGTTTCATGCAACGCCGCCCCGCAATATTTAACCATGCA
ATCTAATAGCGTATCTCTTCCGCACAACTCAGCTGCCAGCGTTCATTTTC
CATTTCAACCCCATATCGAACAGAGGCAGACAAATACCGCAAGCCCATTG
TTTGTGAACTCTATGCAAGTCGATAGTGTGCCATCGCATTCGCAGCAGCA
TGCATCTGTCGAGCTCACTGATGAAAAGCAGAACCAATTCGCCCAGCATC
ACTCTGGTTCTAGTGTTGCTCCACCGCGATCGCAAGAGACCGGGCAATAC
TCTTCAAGTCATATTGCTCATTCAAATCGCGACTCTGTTGATTGTTCCCC
GCCCTCTATGTCCCATGGAGTCATGCATGACAGCACGGGCTCAATTGAAG
TTTCTGGTATGTTTACTTCCTTCCAAACCTTCTCAAACGATGAAGCTCAT
TTGCGAAAGAAGCGAAGCTTCTCGTCGAGCAGTACCCACCTAGTACGCAA
TGCAAACAATACGTCGAATGAAGCTGACCGTATCATACCTCAAATAGCGG
GAATGTCGCAACCTGTGGGTAGCCATTACTTATCCTCTACACGGGAAGGT
TCTACTTTCACGGCACTGGGAGAGCAGAAGGTTCCGCATCTTCAAAACAC
TGCGGGAGCTCAAAGATCAACGGCTGTTGATAACAACAACGAACATTCTG
GTTCTATTGACCATGCTGTGTCCGAAGAAACGCGAAGGAAAATGGAGGTT
GAAGAGGCACAGAGACGGTGGAGAGAAAACAAGCGAAGGGAAATCGCAAT
GAAGCGAGCCAGGGCGGCTAGTTCGAAGCGTGGTCGAAAGCGTACCAAGT
TTCTACACCAACACCCAATAATCGGCCATCCTGTACATGTTGTTTCGGGA
AGTCTCTCTCTGCACCCGAGTGTTTCATTTCAGGCTTCTACCGGACCAAC
AAATGCCCTGCCAGTGCCATCTGCATTACACAATTTTGGCACTAACGACC
AGGTACAAGTTTCTTCTGGTGAAGTGTCGTCGGCAATGATAAGATCAATT
GGAACCTCGGCTTCTGAGCCCATTTCTTCATCAATTGGGATGTCAGGCCC
ATCACATGCACCTGTATCGTTTCCTCTTTCATCAGTACCGATTCCTTCGT
CAGTTGCTGTTCCAGTGGTTCCTGCATTGACAATTCAGCACATACAATCA
TCAAACTTCGGAGCGGGCCATGACCCTGATCCGGGATTCAACTCTTCCCC
TTTGAACGCATCTAACCAATACTCGAACATGGTAACTCCTGAACGAGTAC
CCCACAGCGGCATGAATACGGAAGGATTACATAGCATTCCTGAGGAGGAT
GGTGCTGTGGCTTTATACGAACCACTTCCCCAGAATACGAGGGAACCAGC
CCATGCTTCTGGGGCCCAGGCAGTCATTCCTGCGGCAACTGAGGTTTGCG
CGACGGATTTGATCGATTCACGATCAAATCAAAATGATGTCCCGGATCAT
ACTACTGGAAGAGGACAATCAAAGCCACTCGCCATACCTCCAGACACAGA
TGTATCCTCTCCTGTAAAGATGGCCGATGGAAGTCGTTTAGATCAACCCG
CTTCTGAGGAAGTAGAAAACTCGAGGACAGAGAAAGAAGAGATACACTTT
GTTGCTGCGCAGACGGCAGTGAGGGAACATGAAAATAGCGAGGCAACTGC
CGCTACGGAACCTCAAATTGAGAACGGAAAGCGTTCTACAAGCAATGAAA
GAACCACAAAACAGTTCGAAGACAATAGAAAACCATCAGTGGAGAACGGA
GCCGGAAAGGAGTTTGAAGACCCACAGGAATCTTTTCAAGAGGATGGCAG
CGATGACATTATGAATTCGGTAAATTGGCACAGCCTTGGGAGCATTGATA
ACAGATAA
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Coding sequence (CDS) from alignment at tig00004400_pilon:2321183..2323340+

>Gchil2671.t1 ID=Gchil2671.t1|Name=Gchil2671.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1899bp|location=Sequence derived from alignment at tig00004400_pilon:2321183..2323340+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACAACGCGCAACAGGCGTTTTCAAACGATGGCTCTGAAGCCATTCG
TCGGCTGCAACGCGAGTGGCGAATAGCAAAGCGTAAGGAAATTGAGGACA
AGAAGCGCAAAAAGAAGTTTCGAGCAATGGAAACCCCGGCTCAAGTTTCA
TGCAACGCCGCCCCGCAATATTTAACCATGCAATCTAATAGCGTATCTCT
TCCGCACAACTCAGCTGCCAGCGTTCATTTTCCATTTCAACCCCATATCG
AACAGAGGCAGACAAATACCGCAAGCCCATTGTTTGTGAACTCTATGCAA
GTCGATAGTGTGCCATCGCATTCGCAGCAGCATGCATCTGTCGAGCTCAC
TGATGAAAAGCAGAACCAATTCGCCCAGCATCACTCTGGTTCTAGTGTTG
CTCCACCGCGATCGCAAGAGACCGGGCAATACTCTTCAAGTCATATTGCT
CATTCAAATCGCGACTCTGTTGATTGTTCCCCGCCCTCTATGTCCCATGG
AGTCATGCATGACAGCACGGGCTCAATTGAAGTTTCTGCGGGAATGTCGC
AACCTGTGGGTAGCCATTACTTATCCTCTACACGGGAAGGTTCTACTTTC
ACGGCACTGGGAGAGCAGAAGGTTCCGCATCTTCAAAACACTGCGGGAGC
TCAAAGATCAACGGCTGTTGATAACAACAACGAACATTCTGGTTCTATTG
ACCATGCTGTGTCCGAAGAAACGCGAAGGAAAATGGAGGTTGAAGAGGCA
CAGAGACGGTGGAGAGAAAACAAGCGAAGGGAAATCGCAATGAAGCGAGC
CAGGGCGGCTAGTTCGAAGCGTGGTCGAAAGCGTACCAAGTTTCTACACC
AACACCCAATAATCGGCCATCCTGTACATGTTGTTTCGGGAAGTCTCTCT
CTGCACCCGAGTGTTTCATTTCAGGCTTCTACCGGACCAACAAATGCCCT
GCCAGTGCCATCTGCATTACACAATTTTGGCACTAACGACCAGGTACAAG
TTTCTTCTGGTGAAGTGTCGTCGGCAATGATAAGATCAATTGGAACCTCG
GCTTCTGAGCCCATTTCTTCATCAATTGGGATGTCAGGCCCATCACATGC
ACCTGTATCGTTTCCTCTTTCATCAGTACCGATTCCTTCGTCAGTTGCTG
TTCCAGTGGTTCCTGCATTGACAATTCAGCACATACAATCATCAAACTTC
GGAGCGGGCCATGACCCTGATCCGGGATTCAACTCTTCCCCTTTGAACGC
ATCTAACCAATACTCGAACATGGTAACTCCTGAACGAGTACCCCACAGCG
GCATGAATACGGAAGGATTACATAGCATTCCTGAGGAGGATGGTGCTGTG
GCTTTATACGAACCACTTCCCCAGAATACGAGGGAACCAGCCCATGCTTC
TGGGGCCCAGGCAGTCATTCCTGCGGCAACTGAGGTTTGCGCGACGGATT
TGATCGATTCACGATCAAATCAAAATGATGTCCCGGATCATACTACTGGA
AGAGGACAATCAAAGCCACTCGCCATACCTCCAGACACAGATGTATCCTC
TCCTGTAAAGATGGCCGATGGAAGTCGTTTAGATCAACCCGCTTCTGAGG
AAGTAGAAAACTCGAGGACAGAGAAAGAAGAGATACACTTTGTTGCTGCG
CAGACGGCAGTGAGGGAACATGAAAATAGCGAGGCAACTGCCGCTACGGA
ACCTCAAATTGAGAACGGAAAGCGTTCTACAAGCAATGAAAGAACCACAA
AACAGTTCGAAGACAATAGAAAACCATCAGTGGAGAACGGAGCCGGAAAG
GAGTTTGAAGACCCACAGGAATCTTTTCAAGAGGATGGCAGCGATGACAT
TATGAATTCGGTAAATTGGCACAGCCTTGGGAGCATTGATAACAGATAA
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