Gchil5779.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5779.t1
Unique NameGchil5779.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length90
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:1562594..1563072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704589.1
Preferred namePDCD5
PFAMsdsDNA_bind
Max annot lvl2759|Eukaryota
KEGG rclassRC00726
KEGG koko:K00077,ko:K03354,ko:K03860,ko:K05389,ko:K06875
KEGG TC1.A.1.7
KEGG ReactionR02472,R05916
KEGG Pathwayko00563,ko00770,ko01100,ko01110,ko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map00563,map00770,map01100,map01110,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00119,M00389
GOsGO:0000302,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005539,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006915,GO:0006950,GO:0006979,GO:0008047,GO:0008092,GO:0008150,GO:0008201,GO:0008219,GO:0008285,GO:0009636,GO:0009719,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010421,GO:0010468,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010698,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015631,GO:0019222,GO:0023051,GO:0023056,GO:0030162,GO:0030234,GO:0031323,GO:0031325,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033043,GO:0033157,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0036473,GO:0036474,GO:0042127,GO:0042221,GO:0042493,GO:0042542,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043280,GO:0043281,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0045862,GO:0046677,GO:0048487,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051222,GO:0051223,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0060341,GO:0065007,GO:0065009,GO:0070201,GO:0070301,GO:0070848,GO:0070887,GO:0071236,GO:0071310,GO:0071363,GO:0071495,GO:0071559,GO:0071560,GO:0080090,GO:0090087,GO:0090199,GO:0090200,GO:0090316,GO:0097159,GO:0097237,GO:0097367,GO:0097468,GO:0098772,GO:1901363,GO:1901681,GO:1901700,GO:1901701,GO:1903214,GO:1903332,GO:1903333,GO:1903533,GO:1903636,GO:1903638,GO:1903644,GO:1903645,GO:1903747,GO:1903749,GO:1903827,GO:1903829,GO:1903955,GO:1904589,GO:1904591,GO:1904951,GO:1905475,GO:1905477,GO:2000116,GO:2001056,GO:2001233,GO:2001235
Evalue0.000942
EggNOG OGsCOG2118@1|root,KOG3431@2759|Eukaryota
EC1.1.1.169
Descriptionregulation of protein import into mitochondrial outer membrane
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04040,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5779Gchil5779Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 1562594..1563072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5779.t1Gchil5779.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 1562594..1563072 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5779.t1.start1Gchil5779.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 1562594..1562596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5779.t1.CDS1Gchil5779.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 1562594..1562754 +
Gchil5779.t1.CDS2Gchil5779.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 1562846..1562951 +
Gchil5779.t1.CDS3Gchil5779.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 1563070..1563072 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5779.t1.exon1Gchil5779.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 1562594..1562754 +
Gchil5779.t1.exon2Gchil5779.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 1562846..1562951 +
Gchil5779.t1.exon3Gchil5779.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 1563070..1563072 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5779.t1.intron1Gchil5779.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000015_pilon 1562755..1562845 +
Gchil5779.t1.intron2Gchil5779.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000015_pilon 1562952..1563069 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5779.t1.stop1Gchil5779.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 1563070..1563072 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5779.t1 ID=Gchil5779.t1|Name=Gchil5779.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=90bp
MDQDAQLEQWRAQRLAQLRAGAGAGAGASTPDSGAAAEAPASQQELEMRR
KQQEAQQEQRRLILNQILTPEAREKLANIRLVKPQRAQQ*
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spliced messenger RNA

>Gchil5779.t1 ID=Gchil5779.t1|Name=Gchil5779.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=270bp|location=Sequence derived from alignment at tig00000015_pilon:1562594..1563072+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCAAGACGCGCAACTCGAGCAATGGCGCGCGCAGCGCCTGGCTCA
GCTGCGTgccggcgccggcgccggcgccggcgcTAGCACGCCTGACTCGG
GGGCGGCCGCGGAAGCGCCGGCCTCGCAGCAGGAGCTCGAGATGCGTCGC
AAGCAGCAAGAAGCGCAGCAAGAGCAACGGCGGCTGATTCTCAACCAGAT
CCTCACGCCCGAGGCGCGCGAGAAGCTAGCAAACATTCGCCTTGTCAAGC
CGCAACGCGCGCAGCAGTAA
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protein sequence of Gchil5779.t1

>Gchil5779.t1 ID=Gchil5779.t1|Name=Gchil5779.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=90bp
MDQDAQLEQWRAQRLAQLRAGAGAGAGASTPDSGAAAEAPASQQELEMRR
KQQEAQQEQRRLILNQILTPEAREKLANIRLVKPQRAQQ*
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mRNA from alignment at tig00000015_pilon:1562594..1563072+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5779.t1 ID=Gchil5779.t1|Name=Gchil5779.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=479bp|location=Sequence derived from alignment at tig00000015_pilon:1562594..1563072+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACCAAGACGCGCAACTCGAGCAATGGCGCGCGCAGCGCCTGGCTCA
GCTGCGTgccggcgccggcgccggcgccggcgcTAGCACGCCTGACTCGG
GGGCGGCCGCGGAAGCGCCGGCCTCGCAGCAGGAGCTCGAGATGCGTCGC
AAGCAGCAAGAGTAAGTACGCCACCGCCAACATTCGCCACCGCACGCGCC
ACCAAGCCAAGCGCGCCACTGACCAACGTCCCACTCGGCCACATCACCGT
AGAGCGCAGCAAGAGCAACGGCGGCTGATTCTCAACCAGATCCTCACGCC
CGAGGCGCGCGAGAAGCTAGCAAACATTCGCCTTGTCAAGCCGCAACGCG
CGCAGCAGGTAGAGACATATCTCATCAACTCAGCGCAGGGCGCGCAGCTG
AATTCGCGCATCACTGAGGCACAGGTGAAGGACATTCTGCGCTCGCTTAC
GGAACAAACACGCACTCGTACAAAAGTAA
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Coding sequence (CDS) from alignment at tig00000015_pilon:1562594..1563072+

>Gchil5779.t1 ID=Gchil5779.t1|Name=Gchil5779.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=270bp|location=Sequence derived from alignment at tig00000015_pilon:1562594..1563072+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACCAAGACGCGCAACTCGAGCAATGGCGCGCGCAGCGCCTGGCTCA
GCTGCGTgccggcgccggcgccggcgccggcgcTAGCACGCCTGACTCGG
GGGCGGCCGCGGAAGCGCCGGCCTCGCAGCAGGAGCTCGAGATGCGTCGC
AAGCAGCAAGAAGCGCAGCAAGAGCAACGGCGGCTGATTCTCAACCAGAT
CCTCACGCCCGAGGCGCGCGAGAAGCTAGCAAACATTCGCCTTGTCAAGC
CGCAACGCGCGCAGCAGTAA
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