Gchil2590.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2590.t1
Unique NameGchil2590.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length166
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1727309..1727806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog85681.XP_006431535.1
PFAMsNAM-associated
Max annot lvl35493|Streptophyta
Evalue8.04e-09
EggNOG OGs2CVZE@1|root,2S4HR@2759|Eukaryota,37WJ2@33090|Viridiplantae,3GXNA@35493|Streptophyta
DescriptionNo apical meristem-associated C-terminal domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2590Gchil2590Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1727309..1727806 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2590.t1.stop1Gchil2590.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1727309..1727311 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2590.t1.CDS1Gchil2590.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1727309..1727806 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2590.t1.exon1Gchil2590.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1727309..1727806 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2590.t1.start1Gchil2590.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1727804..1727806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2590.t1Gchil2590.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1727309..1727806 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2590.t1 ID=Gchil2590.t1|Name=Gchil2590.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=166bp
MLNVLPNFQARTTPSPTVEGDKKKNVRGTSFLTAQGVAFAKSWLNVSENP
IAGSERKENDFYRALTGFNNDKYKTANLEVRTMESVRKRVLKLNKQCVCL
DACVVRVARKKPAETNWEEIMMMGTAIYNDVDFTAIDEDPWMALPFLDFW
NTLRHHPEFGADLDP*
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spliced messenger RNA

>Gchil2590.t1 ID=Gchil2590.t1|Name=Gchil2590.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=498bp|location=Sequence derived from alignment at tig00004400_pilon:1727309..1727806- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAATGTACTACCCAACTTCCAAGCTAGAACCACCCCATCCCCAAC
GGTAGAAGGAGACAAAAAGAAAAACGTACGTGGCACGAGCTTTTTGACGG
CGCAGGGTGTCGCTTTCGCCAAATCTTGGCTCAACGTTAGCGAAAACCCC
ATCGCAGGGAGTGAACGAAAAGAAAATGACTTCTACAGAGCTCTCACAGG
CTTTAACAACGACAAGTATAAAACAGCAAACCTTGAAGTGCGAACAATGG
AATCCGTGCGCAAGCGCGTCTTAAAATTGAACAAACAGTGCGTATGTTTG
GACGCGTGCGTGGTCCGTGTGGCGCGAAAAAAGCCGGCGGAGACCAATTG
GGAAGAAATCATGATGATGGGTACGGCCATCTACAATGATGTAGATTTCA
CGGCAATAGATGAAGACCCTTGGATGGCGCTCCCCTTTCTCGATTTTTGG
AACACATTGCGACACCACCCCGAATTCGGCGCAGACCTGGATCCGTAG
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protein sequence of Gchil2590.t1

>Gchil2590.t1 ID=Gchil2590.t1|Name=Gchil2590.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=166bp
MLNVLPNFQARTTPSPTVEGDKKKNVRGTSFLTAQGVAFAKSWLNVSENP
IAGSERKENDFYRALTGFNNDKYKTANLEVRTMESVRKRVLKLNKQCVCL
DACVVRVARKKPAETNWEEIMMMGTAIYNDVDFTAIDEDPWMALPFLDFW
NTLRHHPEFGADLDP*
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mRNA from alignment at tig00004400_pilon:1727309..1727806-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2590.t1 ID=Gchil2590.t1|Name=Gchil2590.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=498bp|location=Sequence derived from alignment at tig00004400_pilon:1727309..1727806- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGAATGTACTACCCAACTTCCAAGCTAGAACCACCCCATCCCCAAC
GGTAGAAGGAGACAAAAAGAAAAACGTACGTGGCACGAGCTTTTTGACGG
CGCAGGGTGTCGCTTTCGCCAAATCTTGGCTCAACGTTAGCGAAAACCCC
ATCGCAGGGAGTGAACGAAAAGAAAATGACTTCTACAGAGCTCTCACAGG
CTTTAACAACGACAAGTATAAAACAGCAAACCTTGAAGTGCGAACAATGG
AATCCGTGCGCAAGCGCGTCTTAAAATTGAACAAACAGTGCGTATGTTTG
GACGCGTGCGTGGTCCGTGTGGCGCGAAAAAAGCCGGCGGAGACCAATTG
GGAAGAAATCATGATGATGGGTACGGCCATCTACAATGATGTAGATTTCA
CGGCAATAGATGAAGACCCTTGGATGGCGCTCCCCTTTCTCGATTTTTGG
AACACATTGCGACACCACCCCGAATTCGGCGCAGACCTGGATCCGTAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:1727309..1727806-

>Gchil2590.t1 ID=Gchil2590.t1|Name=Gchil2590.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=498bp|location=Sequence derived from alignment at tig00004400_pilon:1727309..1727806- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGAATGTACTACCCAACTTCCAAGCTAGAACCACCCCATCCCCAAC
GGTAGAAGGAGACAAAAAGAAAAACGTACGTGGCACGAGCTTTTTGACGG
CGCAGGGTGTCGCTTTCGCCAAATCTTGGCTCAACGTTAGCGAAAACCCC
ATCGCAGGGAGTGAACGAAAAGAAAATGACTTCTACAGAGCTCTCACAGG
CTTTAACAACGACAAGTATAAAACAGCAAACCTTGAAGTGCGAACAATGG
AATCCGTGCGCAAGCGCGTCTTAAAATTGAACAAACAGTGCGTATGTTTG
GACGCGTGCGTGGTCCGTGTGGCGCGAAAAAAGCCGGCGGAGACCAATTG
GGAAGAAATCATGATGATGGGTACGGCCATCTACAATGATGTAGATTTCA
CGGCAATAGATGAAGACCCTTGGATGGCGCTCCCCTTTCTCGATTTTTGG
AACACATTGCGACACCACCCCGAATTCGGCGCAGACCTGGATCCGTAG
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